Literature DB >> 21581901

N-[4-(β-d-Allopyranos-yloxy)benzyl-idene]methyl-amine.

Shi-Ming Lv1, Lei Zheng, Hui Zhao, Ying Li, Shu-Fan Yin.   

Abstract

The title compound, C(14)H(19)NO(6), was synthesized by the condensation reaction between hecilid (4-formyl-phenl-β-d-allopyran-oside) and methyl-amine in methanol. In the crystal structure, the pyran ring adopts a chair conformation and adjacent mol-ecules are linked by inter-molecular O-H⋯O and O-H⋯N hydrogen bonds, forming a three-dimensional network.

Entities:  

Year:  2009        PMID: 21581901      PMCID: PMC2968321          DOI: 10.1107/S1600536809000944

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical and biological properties of hecilid and its derivatives, see: Chen et al. (1981 ▶); Sha & Mao (1987 ▶); Zhu et al. (2006 ▶); Yang et al. (2008 ▶).

Experimental

Crystal data

C14H19NO6 M = 297.30 Monoclinic, a = 6.721 (4) Å b = 7.751 (3) Å c = 14.119 (4) Å β = 91.46 (3)° V = 735.3 (6) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 292 (2) K 0.48 × 0.46 × 0.44 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 1479 measured reflections 1469 independent reflections 1325 reflections with I > 2σ(I) R int = 0.004 3 standard reflections every 120 reflections intensity decay: 0.8%

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.093 S = 1.09 1469 reflections 195 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.25 e Å−3 Data collection: DIFRAC (Gabe et al., 1993 ▶); cell refinement: DIFRAC; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809000944/rz2284sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809000944/rz2284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H19NO6F(000) = 316
Mr = 297.30Dx = 1.343 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 25 reflections
a = 6.721 (4) Åθ = 4.2–7.5°
b = 7.751 (3) ŵ = 0.11 mm1
c = 14.119 (4) ÅT = 292 K
β = 91.46 (3)°Block, colourless
V = 735.3 (6) Å30.48 × 0.46 × 0.44 mm
Z = 2
Enraf–Nonius CAD-4 diffractometerRint = 0.004
Radiation source: fine-focus sealed tubeθmax = 25.5°, θmin = 1.4°
graphiteh = −8→8
ω/2θ scansk = 0→9
1479 measured reflectionsl = −5→17
1469 independent reflections3 standard reflections every 120 reflections
1325 reflections with I > 2σ(I) intensity decay: 0.8%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0607P)2 + 0.0722P] where P = (Fo2 + 2Fc2)/3
1469 reflections(Δ/σ)max < 0.001
195 parametersΔρmax = 0.16 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.3071 (3)−0.0753 (2)0.21216 (11)0.0379 (4)
O20.4392 (3)−0.3849 (2)0.12078 (13)0.0451 (5)
H2O0.4074−0.42600.17170.068*
O30.1787 (3)0.0239 (3)−0.03679 (11)0.0441 (4)
H3O0.28540.0646−0.05270.066*
O40.3774 (3)0.2704 (2)0.06228 (14)0.0465 (5)
H4O0.38920.37470.07040.070*
O50.2525 (3)0.3895 (2)0.23888 (12)0.0403 (4)
H5O0.17010.42340.27640.060*
O60.3519 (2)0.0903 (3)0.34359 (10)0.0394 (4)
N11.0551 (3)−0.0235 (3)0.64875 (15)0.0434 (5)
C10.3201 (4)−0.0893 (3)0.11071 (17)0.0331 (5)
H10.4538−0.05590.09150.040*
C20.1662 (4)0.0309 (3)0.06374 (16)0.0364 (5)
H20.0333−0.00810.08110.044*
C30.1951 (4)0.2142 (3)0.09971 (16)0.0377 (5)
H30.08640.28730.07540.045*
C40.2018 (4)0.2204 (3)0.20805 (16)0.0336 (5)
H40.07110.18910.23200.040*
C50.3562 (4)0.0917 (3)0.24383 (15)0.0336 (5)
H50.48880.12420.22270.040*
C60.2829 (4)−0.2759 (3)0.0851 (2)0.0419 (6)
H6A0.1575−0.31260.11100.050*
H6B0.2727−0.28700.01670.050*
C70.5264 (3)0.0507 (4)0.39210 (15)0.0346 (5)
C80.5361 (4)0.1100 (4)0.48498 (15)0.0373 (6)
H80.42980.17040.50980.045*
C90.7042 (4)0.0788 (4)0.54001 (15)0.0380 (6)
H90.71020.11650.60260.046*
C100.8654 (4)−0.0086 (3)0.50277 (16)0.0372 (6)
C110.8541 (4)−0.0656 (4)0.40913 (17)0.0414 (6)
H110.9618−0.12260.38340.050*
C120.6830 (4)−0.0379 (4)0.35401 (16)0.0408 (6)
H120.6742−0.07880.29210.049*
C131.0481 (4)−0.0398 (4)0.55985 (18)0.0415 (6)
H131.1629−0.07270.52920.050*
C141.2474 (4)−0.0454 (5)0.6982 (2)0.0536 (7)
H14A1.3461−0.07760.65350.080*
H14B1.2368−0.13410.74530.080*
H14C1.28550.06110.72820.080*
U11U22U33U12U13U23
O10.0468 (9)0.0314 (9)0.0350 (9)−0.0009 (8)−0.0059 (7)0.0028 (8)
O20.0549 (11)0.0277 (9)0.0526 (10)0.0046 (8)0.0014 (8)0.0060 (8)
O30.0518 (11)0.0434 (11)0.0366 (8)0.0007 (9)−0.0127 (7)−0.0042 (8)
O40.0700 (13)0.0285 (9)0.0416 (9)−0.0075 (9)0.0098 (8)−0.0041 (8)
O50.0488 (11)0.0329 (9)0.0394 (9)−0.0012 (8)0.0074 (8)−0.0061 (8)
O60.0371 (9)0.0501 (11)0.0307 (8)0.0036 (8)−0.0039 (7)0.0020 (8)
N10.0370 (11)0.0493 (14)0.0435 (11)−0.0017 (10)−0.0059 (9)0.0079 (10)
C10.0350 (12)0.0281 (12)0.0359 (11)−0.0010 (10)−0.0048 (9)−0.0006 (10)
C20.0373 (13)0.0342 (13)0.0373 (12)0.0019 (11)−0.0098 (10)−0.0010 (11)
C30.0453 (13)0.0328 (12)0.0347 (12)0.0072 (12)−0.0069 (10)0.0012 (11)
C40.0365 (12)0.0307 (12)0.0335 (11)0.0018 (11)−0.0007 (9)−0.0006 (10)
C50.0348 (12)0.0368 (13)0.0292 (11)−0.0011 (11)−0.0017 (9)0.0012 (10)
C60.0464 (14)0.0284 (13)0.0504 (14)−0.0019 (12)−0.0091 (11)−0.0016 (11)
C70.0364 (12)0.0338 (12)0.0334 (11)−0.0003 (11)−0.0033 (9)0.0054 (10)
C80.0374 (13)0.0401 (14)0.0345 (12)0.0043 (11)0.0015 (10)0.0000 (11)
C90.0410 (13)0.0430 (14)0.0297 (11)0.0006 (11)−0.0009 (9)0.0004 (11)
C100.0381 (13)0.0366 (13)0.0368 (12)−0.0006 (10)−0.0021 (10)0.0052 (10)
C110.0420 (14)0.0412 (14)0.0412 (13)0.0085 (12)0.0036 (10)0.0018 (12)
C120.0491 (14)0.0418 (14)0.0315 (11)0.0059 (13)−0.0031 (10)−0.0031 (11)
C130.0359 (13)0.0411 (15)0.0475 (14)0.0003 (11)−0.0003 (11)0.0064 (12)
C140.0420 (15)0.0617 (19)0.0564 (16)−0.0042 (15)−0.0165 (12)0.0100 (15)
O1—C51.406 (3)C4—C51.517 (3)
O1—C11.441 (3)C4—H40.9800
O2—C61.430 (3)C5—H50.9800
O2—H2O0.8200C6—H6A0.9700
O3—C21.425 (3)C6—H6B0.9700
O3—H3O0.8200C7—C121.377 (4)
O4—C31.415 (3)C7—C81.390 (3)
O4—H4O0.8200C8—C91.376 (3)
O5—C41.420 (3)C8—H80.9300
O5—H5O0.8200C9—C101.392 (4)
O6—C71.378 (3)C9—H90.9300
O6—C51.410 (3)C10—C111.394 (3)
N1—C131.261 (3)C10—C131.471 (4)
N1—C141.463 (3)C11—C121.389 (4)
C1—C61.510 (3)C11—H110.9300
C1—C21.531 (3)C12—H120.9300
C1—H10.9800C13—H130.9300
C2—C31.520 (4)C14—H14A0.9600
C2—H20.9800C14—H14B0.9600
C3—C41.530 (3)C14—H14C0.9600
C3—H30.9800
C5—O1—C1111.46 (17)O6—C5—H5110.4
C6—O2—H2O109.5C4—C5—H5110.4
C2—O3—H3O109.5O2—C6—C1111.5 (2)
C3—O4—H4O109.5O2—C6—H6A109.3
C4—O5—H5O109.5C1—C6—H6A109.3
C7—O6—C5117.35 (18)O2—C6—H6B109.3
C13—N1—C14118.3 (2)C1—C6—H6B109.3
O1—C1—C6107.3 (2)H6A—C6—H6B108.0
O1—C1—C2109.09 (19)C12—C7—O6124.5 (2)
C6—C1—C2111.9 (2)C12—C7—C8121.0 (2)
O1—C1—H1109.5O6—C7—C8114.5 (2)
C6—C1—H1109.5C9—C8—C7119.5 (2)
C2—C1—H1109.5C9—C8—H8120.2
O3—C2—C3111.0 (2)C7—C8—H8120.2
O3—C2—C1110.6 (2)C8—C9—C10120.5 (2)
C3—C2—C1110.17 (18)C8—C9—H9119.7
O3—C2—H2108.3C10—C9—H9119.7
C3—C2—H2108.3C9—C10—C11119.2 (2)
C1—C2—H2108.3C9—C10—C13121.3 (2)
O4—C3—C2105.5 (2)C11—C10—C13119.5 (2)
O4—C3—C4111.1 (2)C12—C11—C10120.5 (2)
C2—C3—C4111.3 (2)C12—C11—H11119.8
O4—C3—H3109.6C10—C11—H11119.8
C2—C3—H3109.6C7—C12—C11119.2 (2)
C4—C3—H3109.6C7—C12—H12120.4
O5—C4—C5110.4 (2)C11—C12—H12120.4
O5—C4—C3109.7 (2)N1—C13—C10122.6 (2)
C5—C4—C3108.34 (19)N1—C13—H13118.7
O5—C4—H4109.5C10—C13—H13118.7
C5—C4—H4109.5N1—C14—H14A109.5
C3—C4—H4109.5N1—C14—H14B109.5
O1—C5—O6107.48 (19)H14A—C14—H14B109.5
O1—C5—C4110.26 (19)N1—C14—H14C109.5
O6—C5—C4107.84 (19)H14A—C14—H14C109.5
O1—C5—H5110.4H14B—C14—H14C109.5
C5—O1—C1—C6175.0 (2)O5—C4—C5—O663.7 (2)
C5—O1—C1—C2−63.6 (2)C3—C4—C5—O6−176.21 (19)
O1—C1—C2—O3178.37 (19)O1—C1—C6—O2−66.7 (3)
C6—C1—C2—O3−63.1 (3)C2—C1—C6—O2173.71 (19)
O1—C1—C2—C355.3 (3)C5—O6—C7—C12−21.4 (4)
C6—C1—C2—C3173.8 (2)C5—O6—C7—C8157.8 (2)
O3—C2—C3—O4−53.9 (2)C12—C7—C8—C9−0.4 (4)
C1—C2—C3—O468.9 (2)O6—C7—C8—C9−179.6 (2)
O3—C2—C3—C4−174.57 (19)C7—C8—C9—C101.2 (4)
C1—C2—C3—C4−51.7 (3)C8—C9—C10—C11−0.5 (4)
O4—C3—C4—O555.8 (3)C8—C9—C10—C13178.6 (2)
C2—C3—C4—O5173.1 (2)C9—C10—C11—C12−1.0 (4)
O4—C3—C4—C5−64.8 (3)C13—C10—C11—C12179.9 (3)
C2—C3—C4—C552.6 (3)O6—C7—C12—C11178.0 (3)
C1—O1—C5—O6−176.31 (17)C8—C7—C12—C11−1.1 (4)
C1—O1—C5—C466.4 (2)C10—C11—C12—C71.8 (4)
C7—O6—C5—O190.4 (2)C14—N1—C13—C10−175.7 (3)
C7—O6—C5—C4−150.8 (2)C9—C10—C13—N115.4 (4)
O5—C4—C5—O1−179.22 (19)C11—C10—C13—N1−165.5 (3)
C3—C4—C5—O1−59.1 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2O···O5i0.822.022.742 (3)147
O3—H3O···O2ii0.822.142.942 (3)165
O4—H4O···O2iii0.822.022.824 (3)167
O5—H5O···N1iv0.821.912.723 (3)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2O⋯O5i0.822.022.742 (3)147
O3—H3O⋯O2ii0.822.142.942 (3)165
O4—H4O⋯O2iii0.822.022.824 (3)167
O5—H5O⋯N1iv0.821.912.723 (3)170

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  (E)-4-(β-d-Allopyran-os-yloxy)cinnamyl 4-bromo-phenyl ketone ethanol solvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-31
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