Literature DB >> 21583626

1'-Methyl-2,2''-dioxoindoline-3-spiro-2'-pyrrolidine-3'-spiro-3''-indoline-4',4'-di-carbonitrile.

P Ramesh, S S Sundaresan, N Vidhya Lakshmi, Paramasivan T Perumal, M N Ponnuswamy.   

Abstract

In the title compound, C(21)H(15)N(5)O(2), the pyrrolidine ring adopts a twist conformation. Both the oxindole rings are planar [maximum deviations of 0.076 (1) and 0.029 (1) Å in the two rings] and are oriented at a dihedral angle of 72.7 (1)°. The crystal structure is stabilized by C-H⋯O, N-H⋯O, N-H⋯N and C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583626      PMCID: PMC2977508          DOI: 10.1107/S1600536809028025

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of indole derivatives as bioactive drugs, see: Stevenson et al. (2000 ▶). They exibit anti-allergic, central nervous system depressant and muscle-relaxant properties, see: Harris & Uhle (1960 ▶); Ho et al. (1986 ▶). Indoles also exhibit high aldose reductase inhibitory activity, see: Rajeswaran et al. (1999 ▶). For puckering and asymmetry parameters, see: Cremer & Pople (1975 ▶); Nardelli (1983 ▶).

Experimental

Crystal data

C21H15N5O2 M = 369.38 Monoclinic, a = 13.3173 (3) Å b = 9.9480 (2) Å c = 13.3950 (3) Å β = 91.827 (1)° V = 1773.67 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.972, T max = 0.982 26314 measured reflections 6939 independent reflections 4820 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.142 S = 1.02 6939 reflections 263 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809028025/bt2998sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028025/bt2998Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H15N5O2F(000) = 768
Mr = 369.38Dx = 1.383 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3546 reflections
a = 13.3173 (3) Åθ = 2.1–33.5°
b = 9.9480 (2) ŵ = 0.09 mm1
c = 13.3950 (3) ÅT = 293 K
β = 91.827 (1)°Block, colourless
V = 1773.67 (7) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII area-detector diffractometer6939 independent reflections
Radiation source: fine-focus sealed tube4820 reflections with I > 2σ(I)
graphiteRint = 0.030
ω and φ scansθmax = 33.5°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −18→20
Tmin = 0.972, Tmax = 0.982k = −15→14
26314 measured reflectionsl = −20→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.0723P)2 + 0.242P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.012
6939 reflectionsΔρmax = 0.38 e Å3
263 parametersΔρmin = −0.21 e Å3
2 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0042 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.62030 (6)0.88197 (10)0.24064 (7)0.0387 (2)
O20.24158 (6)0.73812 (9)0.25781 (7)0.03117 (19)
N10.59318 (8)0.75699 (11)0.09828 (8)0.0329 (2)
H10.6578 (14)0.7468 (18)0.0787 (14)0.058 (5)*
C20.56573 (8)0.82292 (11)0.18087 (8)0.0270 (2)
C30.44951 (7)0.81058 (11)0.18735 (7)0.02235 (19)
C40.42192 (8)0.73937 (11)0.09067 (8)0.0254 (2)
C50.33077 (10)0.71016 (14)0.04484 (9)0.0352 (3)
H50.27120.73160.07550.042*
C60.32903 (11)0.64796 (15)−0.04818 (10)0.0417 (3)
H60.26790.6272−0.07990.050*
C70.41773 (12)0.61699 (14)−0.09353 (10)0.0417 (3)
H70.41530.5740−0.15520.050*
C80.50971 (11)0.64808 (13)−0.04977 (9)0.0362 (3)
H80.56920.6283−0.08110.043*
C90.51005 (9)0.70967 (11)0.04223 (8)0.0281 (2)
C100.42527 (7)0.73565 (10)0.28602 (7)0.02080 (18)
C110.31810 (8)0.67524 (11)0.27584 (8)0.0236 (2)
N120.32571 (7)0.54152 (10)0.29159 (8)0.0301 (2)
H120.2748 (13)0.4894 (17)0.2909 (12)0.045 (4)*
C130.42464 (8)0.50270 (11)0.31500 (8)0.0273 (2)
C140.45870 (11)0.37590 (13)0.33844 (11)0.0386 (3)
H140.41520.30280.33910.046*
C150.55997 (12)0.36121 (14)0.36089 (11)0.0436 (3)
H150.58520.27640.37670.052*
C160.62440 (10)0.46957 (14)0.36045 (11)0.0405 (3)
H160.69230.45700.37620.049*
C170.58894 (8)0.59738 (13)0.33672 (9)0.0316 (2)
H170.63250.67050.33650.038*
C180.48791 (8)0.61382 (11)0.31355 (8)0.0236 (2)
N190.39864 (7)0.93947 (9)0.19956 (6)0.02403 (18)
C200.41979 (9)0.98552 (11)0.30134 (8)0.0266 (2)
H20A0.36681.04420.32360.032*
H20B0.48311.03360.30590.032*
C210.42485 (8)0.85489 (11)0.36474 (8)0.02283 (19)
C220.42339 (11)1.04057 (13)0.12517 (10)0.0376 (3)
H22A0.49391.06030.13030.056*
H22B0.38571.12100.13680.056*
H22C0.40681.00680.05960.056*
C230.33963 (8)0.84184 (12)0.43191 (8)0.0281 (2)
N240.27708 (9)0.82688 (14)0.48603 (9)0.0446 (3)
C250.51485 (8)0.85674 (11)0.43181 (8)0.0268 (2)
N260.57990 (8)0.86218 (12)0.48812 (8)0.0392 (3)
U11U22U33U12U13U23
O10.0260 (4)0.0448 (5)0.0452 (5)−0.0086 (4)0.0027 (4)−0.0073 (4)
O20.0199 (3)0.0330 (4)0.0406 (5)0.0004 (3)0.0001 (3)0.0051 (3)
N10.0244 (5)0.0381 (6)0.0370 (5)−0.0003 (4)0.0122 (4)−0.0043 (4)
C20.0234 (5)0.0257 (5)0.0323 (5)−0.0019 (4)0.0072 (4)0.0021 (4)
C30.0203 (4)0.0223 (5)0.0247 (4)−0.0001 (4)0.0050 (3)0.0000 (4)
C40.0275 (5)0.0251 (5)0.0240 (5)0.0005 (4)0.0052 (4)0.0001 (4)
C50.0318 (6)0.0435 (7)0.0303 (5)−0.0005 (5)0.0015 (5)−0.0043 (5)
C60.0428 (7)0.0509 (8)0.0311 (6)−0.0057 (6)−0.0035 (5)−0.0051 (5)
C70.0594 (9)0.0378 (7)0.0283 (6)−0.0034 (6)0.0073 (6)−0.0066 (5)
C80.0450 (7)0.0327 (6)0.0318 (6)0.0024 (5)0.0144 (5)−0.0035 (5)
C90.0316 (5)0.0250 (5)0.0281 (5)0.0010 (4)0.0092 (4)0.0008 (4)
C100.0175 (4)0.0207 (4)0.0242 (4)−0.0003 (3)0.0021 (3)0.0001 (3)
C110.0212 (4)0.0254 (5)0.0243 (4)−0.0031 (4)0.0011 (4)0.0022 (4)
N120.0246 (4)0.0247 (5)0.0408 (5)−0.0067 (4)−0.0023 (4)0.0056 (4)
C130.0278 (5)0.0239 (5)0.0301 (5)−0.0005 (4)−0.0021 (4)0.0036 (4)
C140.0427 (7)0.0243 (5)0.0485 (7)−0.0005 (5)−0.0063 (6)0.0087 (5)
C150.0482 (8)0.0310 (6)0.0509 (8)0.0102 (6)−0.0085 (6)0.0090 (6)
C160.0329 (6)0.0388 (7)0.0490 (7)0.0105 (5)−0.0097 (5)0.0019 (6)
C170.0245 (5)0.0308 (6)0.0394 (6)0.0025 (4)−0.0022 (4)−0.0011 (5)
C180.0222 (4)0.0225 (5)0.0261 (5)0.0011 (4)−0.0002 (4)0.0007 (4)
N190.0274 (4)0.0206 (4)0.0243 (4)0.0015 (3)0.0058 (3)0.0027 (3)
C200.0305 (5)0.0207 (5)0.0286 (5)−0.0005 (4)0.0027 (4)−0.0004 (4)
C210.0204 (4)0.0247 (5)0.0236 (4)−0.0003 (4)0.0035 (3)−0.0013 (4)
C220.0465 (7)0.0291 (6)0.0381 (6)0.0048 (5)0.0153 (5)0.0108 (5)
C230.0242 (5)0.0324 (6)0.0279 (5)0.0002 (4)0.0044 (4)−0.0010 (4)
N240.0340 (6)0.0591 (8)0.0414 (6)−0.0017 (5)0.0139 (5)−0.0006 (5)
C250.0247 (5)0.0283 (5)0.0275 (5)−0.0002 (4)0.0025 (4)−0.0031 (4)
N260.0328 (5)0.0475 (7)0.0370 (5)0.0005 (5)−0.0050 (4)−0.0064 (5)
O1—C21.2154 (14)N12—H120.853 (17)
O2—C111.2134 (13)C13—C141.3735 (16)
N1—C21.3467 (15)C13—C181.3904 (15)
N1—C91.3993 (16)C14—C151.380 (2)
N1—H10.913 (18)C14—H140.9300
C2—C31.5578 (15)C15—C161.378 (2)
C3—N191.4618 (13)C15—H150.9300
C3—C41.5111 (15)C16—C171.3896 (18)
C3—C101.5601 (14)C16—H160.9300
C4—C51.3738 (17)C17—C181.3809 (15)
C4—C91.3908 (15)C17—H170.9300
C5—C61.3908 (18)N19—C201.4572 (14)
C5—H50.9300N19—C221.4607 (14)
C6—C71.380 (2)C20—C211.5527 (15)
C6—H60.9300C20—H20A0.9700
C7—C81.376 (2)C20—H20B0.9700
C7—H70.9300C21—C251.4749 (15)
C8—C91.3760 (16)C21—C231.4763 (15)
C8—H80.9300C22—H22A0.9600
C10—C181.5103 (14)C22—H22B0.9600
C10—C111.5505 (14)C22—H22C0.9600
C10—C211.5871 (14)C23—N241.1314 (14)
C11—N121.3502 (14)C25—N261.1317 (15)
N12—C131.3989 (15)
C2—N1—C9111.95 (10)C14—C13—C18122.51 (11)
C2—N1—H1125.0 (12)C14—C13—N12127.35 (11)
C9—N1—H1123.0 (12)C18—C13—N12110.14 (9)
O1—C2—N1127.18 (11)C13—C14—C15117.41 (12)
O1—C2—C3125.15 (10)C13—C14—H14121.3
N1—C2—C3107.67 (10)C15—C14—H14121.3
N19—C3—C4113.97 (9)C16—C15—C14121.37 (12)
N19—C3—C2113.70 (9)C16—C15—H15119.3
C4—C3—C2101.77 (8)C14—C15—H15119.3
N19—C3—C10102.43 (7)C15—C16—C17120.64 (12)
C4—C3—C10116.80 (9)C15—C16—H16119.7
C2—C3—C10108.52 (8)C17—C16—H16119.7
C5—C4—C9119.56 (10)C18—C17—C16118.77 (11)
C5—C4—C3132.01 (10)C18—C17—H17120.6
C9—C4—C3108.28 (10)C16—C17—H17120.6
C4—C5—C6118.92 (11)C17—C18—C13119.29 (10)
C4—C5—H5120.5C17—C18—C10132.57 (10)
C6—C5—H5120.5C13—C18—C10108.13 (9)
C7—C6—C5120.24 (13)C20—N19—C22112.38 (9)
C7—C6—H6119.9C20—N19—C3107.70 (8)
C5—C6—H6119.9C22—N19—C3114.34 (9)
C8—C7—C6121.67 (12)N19—C20—C21104.61 (8)
C8—C7—H7119.2N19—C20—H20A110.8
C6—C7—H7119.2C21—C20—H20A110.8
C9—C8—C7117.32 (12)N19—C20—H20B110.8
C9—C8—H8121.3C21—C20—H20B110.8
C7—C8—H8121.3H20A—C20—H20B108.9
C8—C9—C4122.26 (12)C25—C21—C23104.79 (9)
C8—C9—N1127.61 (11)C25—C21—C20110.06 (9)
C4—C9—N1110.06 (10)C23—C21—C20112.71 (9)
C18—C10—C11102.13 (8)C25—C21—C10113.20 (8)
C18—C10—C3117.56 (8)C23—C21—C10111.00 (9)
C11—C10—C3108.98 (8)C20—C21—C10105.26 (8)
C18—C10—C21116.82 (8)N19—C22—H22A109.5
C11—C10—C21108.99 (8)N19—C22—H22B109.5
C3—C10—C21102.18 (8)H22A—C22—H22B109.5
O2—C11—N12126.68 (10)N19—C22—H22C109.5
O2—C11—C10125.63 (10)H22A—C22—H22C109.5
N12—C11—C10107.69 (9)H22B—C22—H22C109.5
C11—N12—C13111.86 (9)N24—C23—C21176.43 (13)
C11—N12—H12122.8 (11)N26—C25—C21175.22 (12)
C13—N12—H12125.2 (11)
C9—N1—C2—O1−175.23 (12)C11—N12—C13—C18−1.10 (14)
C9—N1—C2—C34.82 (13)C18—C13—C14—C15−0.1 (2)
O1—C2—C3—N1952.14 (15)N12—C13—C14—C15−178.85 (13)
N1—C2—C3—N19−127.91 (10)C13—C14—C15—C160.4 (2)
O1—C2—C3—C4175.14 (12)C14—C15—C16—C17−0.3 (2)
N1—C2—C3—C4−4.91 (11)C15—C16—C17—C180.0 (2)
O1—C2—C3—C10−61.12 (14)C16—C17—C18—C130.28 (18)
N1—C2—C3—C10118.84 (10)C16—C17—C18—C10179.26 (12)
N19—C3—C4—C5−49.34 (16)C14—C13—C18—C17−0.21 (18)
C2—C3—C4—C5−172.16 (13)N12—C13—C18—C17178.72 (10)
C10—C3—C4—C569.89 (16)C14—C13—C18—C10−179.42 (11)
N19—C3—C4—C9126.17 (10)N12—C13—C18—C10−0.49 (13)
C2—C3—C4—C93.36 (11)C11—C10—C18—C17−177.43 (12)
C10—C3—C4—C9−114.60 (10)C3—C10—C18—C1763.40 (16)
C9—C4—C5—C61.73 (19)C21—C10—C18—C17−58.64 (16)
C3—C4—C5—C6176.83 (12)C11—C10—C18—C131.63 (11)
C4—C5—C6—C7−0.3 (2)C3—C10—C18—C13−117.54 (10)
C5—C6—C7—C8−1.1 (2)C21—C10—C18—C13120.42 (10)
C6—C7—C8—C91.0 (2)C4—C3—N19—C20171.14 (9)
C7—C8—C9—C40.43 (19)C2—C3—N19—C20−72.83 (10)
C7—C8—C9—N1−176.24 (12)C10—C3—N19—C2044.04 (10)
C5—C4—C9—C8−1.83 (18)C4—C3—N19—C22−63.21 (12)
C3—C4—C9—C8−177.99 (11)C2—C3—N19—C2252.83 (13)
C5—C4—C9—N1175.36 (11)C10—C3—N19—C22169.69 (9)
C3—C4—C9—N1−0.80 (13)C22—N19—C20—C21−161.08 (9)
C2—N1—C9—C8174.33 (12)C3—N19—C20—C21−34.26 (10)
C2—N1—C9—C4−2.67 (14)N19—C20—C21—C25132.70 (9)
N19—C3—C10—C18−163.79 (9)N19—C20—C21—C23−110.72 (10)
C4—C3—C10—C1870.95 (12)N19—C20—C21—C1010.40 (10)
C2—C3—C10—C18−43.27 (12)C18—C10—C21—C2524.19 (12)
N19—C3—C10—C1180.73 (10)C11—C10—C21—C25139.22 (9)
C4—C3—C10—C11−44.53 (12)C3—C10—C21—C25−105.56 (9)
C2—C3—C10—C11−158.75 (8)C18—C10—C21—C23−93.33 (11)
N19—C3—C10—C21−34.50 (9)C11—C10—C21—C2321.70 (12)
C4—C3—C10—C21−159.76 (8)C3—C10—C21—C23136.92 (9)
C2—C3—C10—C2186.02 (9)C18—C10—C21—C20144.44 (9)
C18—C10—C11—O2177.12 (10)C11—C10—C21—C20−100.54 (9)
C3—C10—C11—O2−57.82 (14)C3—C10—C21—C2014.69 (10)
C21—C10—C11—O252.93 (14)C25—C21—C23—N24−44 (2)
C18—C10—C11—N12−2.28 (11)C20—C21—C23—N24−164 (2)
C3—C10—C11—N12122.78 (9)C10—C21—C23—N2478 (2)
C21—C10—C11—N12−126.47 (9)C23—C21—C25—N26−30.2 (16)
O2—C11—N12—C13−177.24 (11)C20—C21—C25—N2691.2 (16)
C10—C11—N12—C132.15 (13)C10—C21—C25—N26−151.3 (15)
C11—N12—C13—C14177.75 (12)
D—H···AD—HH···AD···AD—H···A
C5—H5···O20.932.493.1371 (15)127
C17—H17···O10.932.473.1433 (16)130
C20—H20B···O10.972.542.9986 (14)109
C22—H22B···O2i0.962.533.3713 (15)147
N12—H12···O2ii0.853 (17)2.591 (17)3.2114 (13)130.5 (14)
N12—H12···N19ii0.853 (17)2.371 (17)3.1613 (13)154.4 (15)
C14—H14···O2ii0.932.513.2305 (16)135
N1—H1···N24iii0.913 (18)2.174 (18)3.0315 (15)156.1 (16)
C7—H7···Cg5iv0.932.843.5366 (15)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O20.932.493.1371 (15)127
C17—H17⋯O10.932.473.1433 (16)130
C20—H20B⋯O10.972.542.9986 (14)109
C22—H22B⋯O2i0.962.533.3713 (15)147
N12—H12⋯O2ii0.853 (17)2.591 (17)3.2114 (13)130.5 (14)
N12—H12⋯N19ii0.853 (17)2.371 (17)3.1613 (13)154.4 (15)
C14—H14⋯O2ii0.932.513.2305 (16)135
N1—H1⋯N24iii0.913 (18)2.174 (18)3.0315 (15)156.1 (16)
C7—H7⋯Cg5iv0.932.843.5366 (15)156

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) . Cg5 is the centroid of the C13–C18 ring.

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Crystal structure of 3'-(1H-indole-3-carbon-yl)-1'-methyl-2-oxo-4'-(4-oxo-4H-chromen-3-yl)spiro-[indoline-3,2'-pyrrolidine]-3'-carbo-nitrile.

Authors:  M P Savithri; R Raja; D Kathirvelan; B S R Reddy; A SubbiahPandi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-31
  1 in total

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