| Literature DB >> 21583592 |
Chun-Lin He1, Zhi-Ming Du, Zheng-Qiang Tang, Xiao-Min Cong, Ling-Qiao Meng.
Abstract
In the crystal structure of the title compound, C(7)H(10)N(6)O(3), there are N-H⋯O, N-H⋯N and C-H⋯O inter-actions, generating a three-dimensional supra-molecular network structure. A short intermolecular O⋯C contact of 2.8994 (18) Å is alsopresent in the crystal structure, but no π-π contacts are observed.Entities:
Year: 2009 PMID: 21583592 PMCID: PMC2977091 DOI: 10.1107/S1600536809027421
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H10N6O3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3214 reflections |
| θ = 3.1–27.5° | |
| µ = 0.12 mm−1 | |
| β = 106.987 (4)° | Block, colourless |
| 0.60 × 0.25 × 0.18 mm | |
| Rigaku Saturn724+ diffractometer | 1898 reflections with |
| Radiation source: Rotating Anode | |
| graphite | θmax = 27.5°, θmin = 3.1° |
| Detector resolution: 28.5714 pixels mm-1 | |
| Multi–scan | |
| 7848 measured reflections | |
| 2255 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2255 reflections | (Δ/σ)max < 0.001 |
| 152 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle betweeex two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.98846 (13) | 0.79462 (5) | 0.37140 (10) | 0.0163 (2) | |
| O2 | 0.33700 (14) | 0.66238 (7) | 0.56926 (11) | 0.0280 (3) | |
| O3 | 0.77881 (14) | 0.53886 (6) | 0.89046 (10) | 0.0199 (2) | |
| N1 | 0.71476 (16) | 0.66802 (7) | 0.30010 (12) | 0.0170 (2) | |
| N2 | 0.60145 (16) | 0.59851 (7) | 0.26310 (12) | 0.0182 (3) | |
| N3 | 0.56513 (16) | 0.56773 (6) | 0.38460 (12) | 0.0170 (2) | |
| N4 | 0.65849 (16) | 0.61680 (6) | 0.50781 (12) | 0.0141 (2) | |
| N5 | 0.64409 (15) | 0.60537 (6) | 0.65826 (12) | 0.0137 (2) | |
| N6 | 0.85854 (15) | 0.73478 (6) | 0.55048 (12) | 0.0147 (2) | |
| C1 | 0.74742 (18) | 0.67770 (7) | 0.45264 (14) | 0.0133 (3) | |
| C2 | 0.46012 (19) | 0.63385 (8) | 0.68129 (15) | 0.0176 (3) | |
| C3 | 0.4357 (2) | 0.62716 (9) | 0.84238 (15) | 0.0216 (3) | |
| H3A | 0.3149 | 0.6562 | 0.8459 | 0.026* | |
| H3B | 0.5531 | 0.6504 | 0.9195 | 0.026* | |
| H3C | 0.4232 | 0.5705 | 0.8676 | 0.026* | |
| C4 | 0.79059 (19) | 0.55442 (7) | 0.76155 (15) | 0.0153 (3) | |
| C5 | 0.9522 (2) | 0.52400 (8) | 0.69584 (16) | 0.0206 (3) | |
| H5A | 1.0570 | 0.4978 | 0.7798 | 0.025* | |
| H5B | 1.0104 | 0.5690 | 0.6532 | 0.025* | |
| H5C | 0.8949 | 0.4853 | 0.6116 | 0.025* | |
| C6 | 0.98590 (18) | 0.78772 (7) | 0.50729 (14) | 0.0132 (3) | |
| C7 | 1.1204 (2) | 0.83460 (8) | 0.63980 (15) | 0.0186 (3) | |
| H7A | 1.2488 | 0.8066 | 0.6799 | 0.022* | |
| H7B | 1.0572 | 0.8401 | 0.7245 | 0.022* | |
| H7C | 1.1433 | 0.8879 | 0.6019 | 0.022* | |
| H6N | 0.858 (2) | 0.7348 (10) | 0.652 (2) | 0.034 (5)* |
| O1 | 0.0204 (5) | 0.0177 (5) | 0.0116 (4) | −0.0020 (4) | 0.0057 (4) | 0.0007 (4) |
| O2 | 0.0230 (5) | 0.0397 (6) | 0.0199 (5) | 0.0122 (5) | 0.0039 (4) | 0.0046 (4) |
| O3 | 0.0220 (5) | 0.0225 (5) | 0.0150 (5) | 0.0013 (4) | 0.0051 (4) | 0.0037 (4) |
| N1 | 0.0176 (6) | 0.0200 (6) | 0.0128 (5) | −0.0040 (4) | 0.0037 (4) | −0.0021 (4) |
| N2 | 0.0191 (6) | 0.0203 (6) | 0.0148 (5) | −0.0039 (4) | 0.0044 (4) | −0.0020 (4) |
| N3 | 0.0186 (6) | 0.0177 (6) | 0.0139 (5) | −0.0034 (4) | 0.0034 (4) | −0.0026 (4) |
| N4 | 0.0172 (5) | 0.0152 (5) | 0.0099 (5) | −0.0029 (4) | 0.0040 (4) | −0.0007 (4) |
| N5 | 0.0151 (5) | 0.0161 (5) | 0.0106 (5) | −0.0005 (4) | 0.0049 (4) | 0.0016 (4) |
| N6 | 0.0181 (5) | 0.0169 (6) | 0.0099 (5) | −0.0042 (4) | 0.0051 (4) | −0.0015 (4) |
| C1 | 0.0130 (6) | 0.0143 (6) | 0.0130 (6) | 0.0000 (5) | 0.0043 (5) | 0.0011 (5) |
| C2 | 0.0167 (7) | 0.0192 (7) | 0.0170 (6) | −0.0001 (5) | 0.0051 (5) | −0.0007 (5) |
| C3 | 0.0183 (7) | 0.0295 (8) | 0.0187 (7) | 0.0018 (5) | 0.0083 (6) | −0.0004 (6) |
| C4 | 0.0152 (7) | 0.0130 (6) | 0.0160 (6) | −0.0024 (5) | 0.0021 (5) | −0.0005 (5) |
| C5 | 0.0185 (7) | 0.0217 (7) | 0.0228 (7) | 0.0031 (5) | 0.0079 (6) | 0.0018 (6) |
| C6 | 0.0142 (6) | 0.0133 (6) | 0.0125 (6) | 0.0022 (5) | 0.0045 (5) | 0.0016 (5) |
| C7 | 0.0218 (7) | 0.0182 (7) | 0.0154 (6) | −0.0047 (5) | 0.0048 (5) | −0.0027 (5) |
| O1—C6 | 1.2164 (15) | N6—H6N | 0.900 (16) |
| O2—C2 | 1.2052 (16) | C2—C3 | 1.4919 (18) |
| O3—C4 | 1.1987 (15) | C3—H3A | 0.9800 |
| N1—C1 | 1.3149 (16) | C3—H3B | 0.9800 |
| N1—N2 | 1.3871 (15) | C3—H3C | 0.9800 |
| N2—N3 | 1.2841 (15) | C4—C5 | 1.5004 (18) |
| N3—N4 | 1.3684 (15) | C5—H5A | 0.9800 |
| N4—C1 | 1.3538 (16) | C5—H5B | 0.9800 |
| N4—N5 | 1.3806 (14) | C5—H5C | 0.9800 |
| N5—C4 | 1.4346 (16) | C6—C7 | 1.4927 (17) |
| N5—C2 | 1.4374 (16) | C7—H7A | 0.9800 |
| N6—C1 | 1.3663 (16) | C7—H7B | 0.9800 |
| N6—C6 | 1.3834 (16) | C7—H7C | 0.9800 |
| C1—N1—N2 | 105.16 (10) | C2—C3—H3C | 109.5 |
| N3—N2—N1 | 111.96 (10) | H3A—C3—H3C | 109.5 |
| N2—N3—N4 | 105.48 (10) | H3B—C3—H3C | 109.5 |
| C1—N4—N3 | 108.73 (10) | O3—C4—N5 | 120.21 (12) |
| C1—N4—N5 | 128.57 (10) | O3—C4—C5 | 124.47 (12) |
| N3—N4—N5 | 122.52 (10) | N5—C4—C5 | 115.32 (11) |
| N4—N5—C4 | 117.38 (10) | C4—C5—H5A | 109.5 |
| N4—N5—C2 | 114.32 (10) | C4—C5—H5B | 109.5 |
| C4—N5—C2 | 127.12 (10) | H5A—C5—H5B | 109.5 |
| C1—N6—C6 | 124.02 (11) | C4—C5—H5C | 109.5 |
| C1—N6—H6N | 117.8 (11) | H5A—C5—H5C | 109.5 |
| C6—N6—H6N | 117.9 (11) | H5B—C5—H5C | 109.5 |
| N1—C1—N4 | 108.66 (11) | O1—C6—N6 | 122.10 (12) |
| N1—C1—N6 | 129.41 (11) | O1—C6—C7 | 122.90 (11) |
| N4—C1—N6 | 121.84 (11) | N6—C6—C7 | 115.00 (11) |
| O2—C2—N5 | 117.62 (12) | C6—C7—H7A | 109.5 |
| O2—C2—C3 | 124.49 (12) | C6—C7—H7B | 109.5 |
| N5—C2—C3 | 117.89 (11) | H7A—C7—H7B | 109.5 |
| C2—C3—H3A | 109.5 | C6—C7—H7C | 109.5 |
| C2—C3—H3B | 109.5 | H7A—C7—H7C | 109.5 |
| H3A—C3—H3B | 109.5 | H7B—C7—H7C | 109.5 |
| C1—N1—N2—N3 | 0.53 (14) | N5—N4—C1—N6 | 7.2 (2) |
| N1—N2—N3—N4 | −0.89 (14) | C6—N6—C1—N1 | −10.5 (2) |
| N2—N3—N4—C1 | 0.93 (13) | C6—N6—C1—N4 | 165.81 (11) |
| N2—N3—N4—N5 | 176.44 (11) | N4—N5—C2—O2 | 1.79 (17) |
| C1—N4—N5—C4 | −96.01 (15) | C4—N5—C2—O2 | −165.32 (12) |
| N3—N4—N5—C4 | 89.42 (14) | N4—N5—C2—C3 | −177.37 (11) |
| C1—N4—N5—C2 | 95.54 (15) | C4—N5—C2—C3 | 15.51 (18) |
| N3—N4—N5—C2 | −79.02 (14) | N4—N5—C4—O3 | −175.90 (11) |
| N2—N1—C1—N4 | 0.09 (14) | C2—N5—C4—O3 | −9.13 (19) |
| N2—N1—C1—N6 | 176.77 (12) | N4—N5—C4—C5 | 4.14 (15) |
| N3—N4—C1—N1 | −0.63 (14) | C2—N5—C4—C5 | 170.91 (12) |
| N5—N4—C1—N1 | −175.79 (11) | C1—N6—C6—O1 | 10.13 (19) |
| N3—N4—C1—N6 | −177.61 (11) | C1—N6—C6—C7 | −169.21 (11) |
| H··· | ||||
| N6—H6N···O1i | 0.902 (17) | 1.955 (17) | 2.7675 (16) | 149.1 (14) |
| N6—H6N···N1i | 0.902 (17) | 2.473 (16) | 3.1359 (18) | 130.6 (13) |
| C3—H3A···O1ii | 0.98 | 2.49 | 3.459 (2) | 169 |
| C7—H7C···O3iii | 0.98 | 2.57 | 3.505 (2) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N6—H6 | 0.902 (17) | 1.955 (17) | 2.7675 (16) | 149.1 (14) |
| N6—H6 | 0.902 (17) | 2.473 (16) | 3.1359 (18) | 130.6 (13) |
| C3—H3 | 0.98 | 2.49 | 3.459 (2) | 169 |
| C7—H7 | 0.98 | 2.57 | 3.505 (2) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) .