| Literature DB >> 21578477 |
Chun-Lin He1, Zhi-Ming Du, Zheng-Qiang Tang, Xiao-Min Cong, Ling-Qiao Meng.
Abstract
The mol-ecule of the title compound, C(6)H(8)N(6), is approximately planar, with a maximum deviation from planarity of 0.099 (1) Å. In the crystal, mol-ecules are linked to each other via pairs of N-H⋯N hydrogen bonding, forming inversion dimers. The crystal structure is further stabilized by π-π stacking inter-actions, with a centroid-centroid distance of 3.419 (1) Å.Entities:
Year: 2009 PMID: 21578477 PMCID: PMC2971328 DOI: 10.1107/S160053680904392X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H8N6 | |
| Monoclinic, | Melting point: 477 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 2263 reflections | |
| θ = 3.3–27.5° | |
| µ = 0.11 mm−1 | |
| β = 96.274 (3)° | |
| Chunk, red | |
| 0.47 × 0.33 × 0.13 mm |
| Rigaku Saturn 724+ diffractometer | 1445 reflections with |
| Radiation source: Rotating Anode | |
| graphite | θmax = 27.5°, θmin = 3.3° |
| Detector resolution: 28.5714 pixels mm-1 | |
| multi–scan | |
| 5029 measured reflections | |
| 1647 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1647 reflections | (Δ/σ)max < 0.001 |
| 119 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.4467 (3) | 0.24707 (7) | 0.45448 (7) | 0.0165 (2) | |
| N2 | 0.5870 (3) | 0.24983 (8) | 0.36816 (7) | 0.0208 (2) | |
| N3 | 0.6547 (3) | 0.16030 (8) | 0.34635 (8) | 0.0223 (3) | |
| N4 | 0.5650 (3) | 0.09674 (8) | 0.41698 (7) | 0.0195 (2) | |
| N5 | 0.3238 (3) | 0.11503 (8) | 0.56546 (8) | 0.0207 (3) | |
| N6 | 0.3868 (3) | 0.34046 (7) | 0.49433 (7) | 0.0176 (2) | |
| C1 | 0.4389 (3) | 0.15238 (9) | 0.48318 (8) | 0.0163 (3) | |
| C2 | 0.1660 (3) | 0.16746 (9) | 0.63408 (8) | 0.0165 (3) | |
| C3 | 0.1175 (3) | 0.26544 (9) | 0.63462 (9) | 0.0180 (3) | |
| C4 | 0.2395 (3) | 0.34313 (9) | 0.57359 (9) | 0.0165 (3) | |
| C5 | 0.0598 (3) | 0.10241 (9) | 0.71313 (9) | 0.0202 (3) | |
| H5A | 0.2595 | 0.0819 | 0.7548 | 0.024* | |
| H5B | −0.0569 | 0.0456 | 0.6844 | 0.024* | |
| H5C | −0.0914 | 0.1380 | 0.7509 | 0.024* | |
| C6 | 0.1945 (3) | 0.44529 (9) | 0.61191 (9) | 0.0206 (3) | |
| H6A | 0.2920 | 0.4920 | 0.5705 | 0.025* | |
| H6B | 0.3084 | 0.4503 | 0.6771 | 0.025* | |
| H6C | −0.0457 | 0.4588 | 0.6126 | 0.025* | |
| H3 | 0.006 (4) | 0.2905 (11) | 0.6876 (11) | 0.025 (4)* | |
| H5N | 0.342 (4) | 0.0478 (14) | 0.5724 (12) | 0.036 (5)* |
| N1 | 0.0214 (5) | 0.0138 (5) | 0.0148 (5) | 0.0006 (4) | 0.0043 (4) | 0.0002 (4) |
| N2 | 0.0285 (6) | 0.0182 (5) | 0.0167 (5) | 0.0010 (4) | 0.0074 (4) | 0.0004 (4) |
| N3 | 0.0309 (6) | 0.0180 (5) | 0.0191 (5) | 0.0013 (5) | 0.0078 (4) | 0.0014 (4) |
| N4 | 0.0261 (6) | 0.0167 (5) | 0.0166 (5) | 0.0007 (4) | 0.0062 (4) | 0.0005 (4) |
| N5 | 0.0315 (6) | 0.0130 (5) | 0.0193 (5) | 0.0016 (4) | 0.0106 (5) | 0.0019 (4) |
| N6 | 0.0230 (5) | 0.0110 (5) | 0.0189 (5) | 0.0009 (4) | 0.0030 (4) | −0.0018 (4) |
| C1 | 0.0177 (6) | 0.0151 (6) | 0.0161 (6) | 0.0000 (5) | 0.0013 (4) | 0.0005 (4) |
| C2 | 0.0174 (6) | 0.0168 (6) | 0.0153 (5) | −0.0009 (5) | 0.0021 (4) | −0.0007 (4) |
| C3 | 0.0196 (6) | 0.0181 (6) | 0.0168 (6) | 0.0000 (5) | 0.0050 (5) | −0.0007 (5) |
| C4 | 0.0163 (6) | 0.0147 (6) | 0.0181 (6) | 0.0004 (4) | −0.0002 (5) | −0.0002 (4) |
| C5 | 0.0240 (6) | 0.0174 (6) | 0.0202 (6) | −0.0003 (5) | 0.0072 (5) | 0.0024 (5) |
| C6 | 0.0246 (6) | 0.0155 (6) | 0.0224 (6) | 0.0011 (5) | 0.0055 (5) | −0.0020 (5) |
| N1—C1 | 1.3469 (15) | C2—C3 | 1.3446 (17) |
| N1—N2 | 1.3635 (14) | C2—C5 | 1.4958 (16) |
| N1—N6 | 1.4119 (14) | C3—C4 | 1.4615 (17) |
| N2—N3 | 1.2874 (15) | C3—H3 | 0.953 (15) |
| N3—N4 | 1.3745 (14) | C4—C6 | 1.5018 (16) |
| N4—C1 | 1.3207 (15) | C5—H5A | 0.9600 |
| N5—C1 | 1.3623 (15) | C5—H5B | 0.9600 |
| N5—C2 | 1.3820 (15) | C5—H5C | 0.9600 |
| N5—H5N | 0.920 (18) | C6—H6A | 0.9600 |
| N6—C4 | 1.2897 (16) | C6—H6B | 0.9600 |
| C1—N1—N2 | 107.83 (10) | C2—C3—H3 | 115.8 (9) |
| C1—N1—N6 | 137.23 (10) | C4—C3—H3 | 112.8 (9) |
| N2—N1—N6 | 114.45 (9) | N6—C4—C3 | 132.13 (11) |
| N3—N2—N1 | 106.88 (10) | N6—C4—C6 | 113.82 (10) |
| N2—N3—N4 | 110.69 (10) | C3—C4—C6 | 114.02 (11) |
| C1—N4—N3 | 105.82 (10) | C2—C5—H5A | 109.5 |
| C1—N5—C2 | 126.17 (11) | C2—C5—H5B | 109.5 |
| C1—N5—H5N | 115.3 (10) | H5A—C5—H5B | 109.5 |
| C2—N5—H5N | 118.4 (10) | C2—C5—H5C | 109.5 |
| C4—N6—N1 | 117.58 (10) | H5A—C5—H5C | 109.5 |
| N4—C1—N1 | 108.78 (10) | H5B—C5—H5C | 109.5 |
| N4—C1—N5 | 122.92 (11) | C4—C6—H6A | 109.5 |
| N1—C1—N5 | 128.29 (11) | C4—C6—H6B | 109.5 |
| C3—C2—N5 | 126.01 (11) | H6A—C6—H6B | 109.5 |
| C3—C2—C5 | 122.01 (11) | C4—C6—H6C | 109.5 |
| N5—C2—C5 | 111.95 (11) | H6A—C6—H6C | 109.5 |
| C2—C3—C4 | 131.03 (12) | H6B—C6—H6C | 109.5 |
| C1—N1—N2—N3 | 0.80 (13) | N6—N1—C1—N5 | 8.2 (2) |
| N6—N1—N2—N3 | 174.17 (10) | C2—N5—C1—N4 | −174.90 (12) |
| N1—N2—N3—N4 | −0.47 (14) | C2—N5—C1—N1 | 5.0 (2) |
| N2—N3—N4—C1 | −0.04 (14) | C1—N5—C2—C3 | −4.3 (2) |
| C1—N1—N6—C4 | −12.5 (2) | C1—N5—C2—C5 | 177.67 (12) |
| N2—N1—N6—C4 | 176.81 (10) | N5—C2—C3—C4 | −7.1 (2) |
| N3—N4—C1—N1 | 0.55 (13) | C5—C2—C3—C4 | 170.75 (12) |
| N3—N4—C1—N5 | −179.54 (11) | N1—N6—C4—C3 | 0.64 (19) |
| N2—N1—C1—N4 | −0.84 (14) | N1—N6—C4—C6 | 178.52 (10) |
| N6—N1—C1—N4 | −171.93 (13) | C2—C3—C4—N6 | 10.9 (2) |
| N2—N1—C1—N5 | 179.24 (12) | C2—C3—C4—C6 | −167.02 (13) |
| H··· | ||||
| N5—H5N···N4i | 0.920 (19) | 1.999 (19) | 2.9156 (17) | 173.5 (15) |
| Cgi | Cgj | Cgi···Cgj | α | Cgi_perp | Cgj_perp |
| Cg1 | Cg2i | 3.419 (1) | 2.83 | 3.384 | 3.390 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H5 | 0.920 (19) | 1.999 (19) | 2.9156 (17) | 173.5 (15) |
Symmetry code: (i) .