Literature DB >> 21201083

Methyl (1H-pyrrol-2-ylcarbonyl-amino)acetate.

Gui Hong Tang1, Dong Dong Li, Xiang Chao Zeng, Shi Song Dong, Yan Shuang Wang.   

Abstract

In the crystal structure of the title compound, C(8)H(10)N(2)O(3), mol-ecules are linked by N-H⋯O hydrogen bonds, forming ribbons of centrosymmetric dimers extending along the c axis.

Entities:  

Year:  2008        PMID: 21201083      PMCID: PMC2959470          DOI: 10.1107/S1600536808027451

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Banwell et al. (2006 ▶); Bernstein et al. (1995 ▶); Faulkner (2002 ▶); Sosa et al. (2002 ▶); Zeng (2006 ▶); Zeng et al. (2007 ▶).

Experimental

Crystal data

C8H10N2O3 M = 182.18 Monoclinic, a = 11.3398 (19) Å b = 5.0732 (9) Å c = 16.500 (3) Å β = 108.060 (3)° V = 902.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 (2) K 0.48 × 0.41 × 0.21 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1997 ▶) T min = 0.952, T max = 0.979 4219 measured reflections 1576 independent reflections 1417 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.166 S = 1.10 1576 reflections 119 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808027451/cf2214sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027451/cf2214Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report Enhanced figure: interactive version of Fig. 1
C8H10N2O3Dx = 1.341 Mg m3
Mr = 182.18Melting point: 420 K
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 11.3398 (19) ÅCell parameters from 3468 reflections
b = 5.0732 (9) Åθ = 2.6–27.0°
c = 16.500 (3) ŵ = 0.10 mm1
β = 108.060 (3)°T = 173 K
V = 902.5 (3) Å3Block, light yellow
Z = 40.48 × 0.41 × 0.21 mm
F(000) = 384
Bruker SMART 1K CCD area-detector diffractometer1576 independent reflections
Radiation source: fine-focus sealed tube1417 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1997)h = −13→13
Tmin = 0.952, Tmax = 0.979k = −6→5
4219 measured reflectionsl = −16→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.166H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.1092P)2 + 0.2414P] where P = (Fo2 + 2Fc2)/3
1576 reflections(Δ/σ)max = 0.001
119 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.89632 (13)0.2572 (2)0.45357 (8)0.0387 (4)
O20.63332 (13)0.2895 (3)0.31013 (8)0.0391 (4)
N20.85781 (14)0.5697 (3)0.35256 (9)0.0343 (4)
H20.87770.64720.31090.041*
O30.58657 (13)0.4945 (3)0.41547 (9)0.0513 (5)
C31.06971 (17)0.3350 (4)0.29921 (12)0.0364 (5)
H31.04140.47780.26080.044*
N11.08932 (14)0.0465 (3)0.40331 (10)0.0343 (4)
H11.0773−0.03860.44660.041*
C50.92253 (15)0.3607 (3)0.39334 (10)0.0306 (5)
C60.75496 (17)0.6645 (3)0.37859 (12)0.0352 (5)
H6A0.72110.82660.34640.042*
H6B0.78470.70990.44000.042*
C70.65395 (17)0.4608 (3)0.36324 (11)0.0329 (5)
C41.02305 (17)0.2601 (3)0.36367 (11)0.0313 (5)
C11.17634 (18)−0.0142 (4)0.36582 (13)0.0394 (5)
H1A1.2344−0.15460.38170.047*
C21.16634 (18)0.1618 (4)0.30085 (13)0.0413 (5)
H2A1.21590.16520.26380.050*
C80.4845 (3)0.3088 (6)0.40341 (18)0.0720 (9)
H8A0.42820.32310.34500.108*
H8B0.43910.34940.44370.108*
H8C0.51740.12900.41350.108*
U11U22U33U12U13U23
O10.0451 (8)0.0384 (8)0.0386 (8)0.0040 (6)0.0217 (6)0.0103 (5)
O20.0448 (8)0.0368 (7)0.0392 (8)−0.0018 (6)0.0180 (6)−0.0094 (6)
N20.0403 (9)0.0297 (8)0.0388 (9)0.0010 (6)0.0207 (7)0.0065 (6)
O30.0508 (9)0.0644 (10)0.0499 (9)−0.0184 (7)0.0319 (8)−0.0247 (7)
C30.0388 (10)0.0350 (10)0.0387 (10)−0.0025 (8)0.0166 (8)0.0063 (8)
N10.0376 (9)0.0304 (8)0.0385 (9)−0.0018 (6)0.0170 (7)0.0044 (6)
C50.0330 (9)0.0288 (10)0.0315 (9)−0.0055 (7)0.0120 (8)0.0008 (7)
C60.0423 (11)0.0274 (9)0.0394 (10)0.0022 (7)0.0178 (8)−0.0003 (7)
C70.0383 (10)0.0322 (9)0.0304 (9)0.0046 (7)0.0141 (8)−0.0008 (7)
C40.0341 (9)0.0270 (9)0.0337 (10)−0.0042 (7)0.0119 (8)0.0006 (7)
C10.0368 (10)0.0345 (10)0.0502 (12)0.0011 (8)0.0184 (9)0.0004 (8)
C20.0416 (11)0.0416 (11)0.0492 (12)−0.0029 (8)0.0265 (9)0.0022 (9)
C80.0677 (16)0.097 (2)0.0690 (16)−0.0400 (15)0.0468 (14)−0.0364 (15)
O1—C51.239 (2)N1—H10.880
O2—C71.204 (2)C5—C41.465 (2)
N2—C51.345 (2)C6—C71.505 (3)
N2—C61.444 (2)C6—H6A0.990
N2—H20.880C6—H6B0.990
O3—C71.328 (2)C1—C21.373 (3)
O3—C81.458 (3)C1—H1A0.950
C3—C41.380 (2)C2—H2A0.950
C3—C21.398 (3)C8—H8A0.980
C3—H30.950C8—H8B0.980
N1—C11.353 (2)C8—H8C0.980
N1—C41.365 (2)
C5—N2—C6118.64 (14)O2—C7—O3122.96 (17)
C5—N2—H2120.7O2—C7—C6125.73 (17)
C6—N2—H2120.7O3—C7—C6111.30 (15)
C7—O3—C8114.87 (16)N1—C4—C3107.59 (16)
C4—C3—C2107.31 (17)N1—C4—C5119.11 (15)
C4—C3—H3126.3C3—C4—C5133.30 (17)
C2—C3—H3126.3N1—C1—C2108.28 (17)
C1—N1—C4109.46 (15)N1—C1—H1A125.9
C1—N1—H1125.3C2—C1—H1A125.9
C4—N1—H1125.3C1—C2—C3107.37 (17)
O1—C5—N2120.38 (16)C1—C2—H2A126.3
O1—C5—C4121.72 (16)C3—C2—H2A126.3
N2—C5—C4117.89 (14)O3—C8—H8A109.5
N2—C6—C7111.34 (14)O3—C8—H8B109.5
N2—C6—H6A109.4H8A—C8—H8B109.5
C7—C6—H6A109.4O3—C8—H8C109.5
N2—C6—H6B109.4H8A—C8—H8C109.5
C7—C6—H6B109.4H8B—C8—H8C109.5
H6A—C6—H6B108.0
C6—N2—C5—O1−2.1 (2)C2—C3—C4—N1−0.2 (2)
C6—N2—C5—C4177.39 (15)C2—C3—C4—C5−179.42 (19)
C5—N2—C6—C7−63.6 (2)O1—C5—C4—N10.2 (3)
C8—O3—C7—O2−0.4 (3)N2—C5—C4—N1−179.30 (14)
C8—O3—C7—C6178.56 (19)O1—C5—C4—C3179.36 (19)
N2—C6—C7—O2−26.5 (3)N2—C5—C4—C3−0.1 (3)
N2—C6—C7—O3154.55 (16)C4—N1—C1—C2−0.1 (2)
C1—N1—C4—C30.2 (2)N1—C1—C2—C30.0 (2)
C1—N1—C4—C5179.57 (16)C4—C3—C2—C10.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.881.932.782 (2)162.
N2—H2···O2ii0.882.092.9372 (19)161.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.881.932.782 (2)162
N2—H2⋯O2ii0.882.092.9372 (19)161

Symmetry codes: (i) ; (ii) .

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