Literature DB >> 21583512

5-Iodo-2-phenyl-3-phenyl-sulfinyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(20)H(13)IO(2)S, the O atom and the phenyl group of the phenyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment; the phenyl ring is almost perpendicular to this plane [83.84 (5)°]. The phenyl ring in the 2-position is rotated out of the benzofuran plane, making a dihedral angle of 40.47 (5)°. The crystal structure is stabilized by non-classical inter-molecular C-H⋯O inter-actions, and by an I⋯O halogen bond of 3.124 (1) Å [C-I⋯O = 165.84 (5)°].

Entities:  

Year:  2009        PMID: 21583512      PMCID: PMC2977478          DOI: 10.1107/S1600536809024556

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar 5-iodo-1-benzofuran derivatives, see: Choi et al. (2007a ▶,b ▶). For a review of halogen inter­actions, see: Politzer et al. (2007 ▶). The Cambridge Structural Database (version 5.28; Allen et al., 2002 ▶) has 39 compounds with C–I⋯O=S contact distances less than or equal to 3.3 Å.

Experimental

Crystal data

C20H13IO2S M = 444.26 Triclinic, a = 9.3544 (4) Å b = 9.7565 (5) Å c = 10.2808 (5) Å α = 113.381 (1)° β = 92.640 (1)° γ = 98.047 (1)° V = 847.42 (7) Å3 Z = 2 Mo Kα radiation μ = 2.02 mm−1 T = 273 K 0.40 × 0.40 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.467, T max = 0.665 7217 measured reflections 3616 independent reflections 3503 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.017 wR(F 2) = 0.044 S = 1.07 3616 reflections 217 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.66 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809024556/ng2605sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024556/ng2605Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H13IO2SZ = 2
Mr = 444.26F(000) = 436
Triclinic, P1Dx = 1.741 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.3544 (4) ÅCell parameters from 6672 reflections
b = 9.7565 (5) Åθ = 2.2–27.5°
c = 10.2808 (5) ŵ = 2.02 mm1
α = 113.381 (1)°T = 273 K
β = 92.640 (1)°Block, colorless
γ = 98.047 (1)°0.40 × 0.40 × 0.20 mm
V = 847.42 (7) Å3
Bruker SMART CCD diffractometer3616 independent reflections
Radiation source: fine-focus sealed tube3503 reflections with I > 2σ(I)
graphiteRint = 0.014
Detector resolution: 10.0 pixels mm-1θmax = 27.0°, θmin = 2.2°
φ and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −12→12
Tmin = 0.467, Tmax = 0.665l = −13→12
7217 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.017Hydrogen site location: difference Fourier map
wR(F2) = 0.044H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0224P)2 + 0.4472P] where P = (Fo2 + 2Fc2)/3
3616 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.66 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.041308 (11)0.682844 (11)0.391884 (12)0.02610 (5)
S0.15151 (4)0.00846 (5)0.27065 (4)0.02113 (8)
O10.23863 (13)0.11727 (14)−0.05193 (12)0.0244 (2)
O20.01344 (13)0.05325 (15)0.32919 (13)0.0278 (3)
C10.19488 (18)0.09925 (19)0.15550 (17)0.0213 (3)
C20.16806 (17)0.24593 (19)0.16717 (17)0.0212 (3)
C30.12402 (18)0.37088 (19)0.27157 (18)0.0229 (3)
H30.10380.37140.35950.027*
C40.11164 (18)0.49421 (19)0.23915 (18)0.0231 (3)
C50.14158 (19)0.4962 (2)0.10730 (19)0.0263 (3)
H50.13290.58150.09010.032*
C60.1841 (2)0.3719 (2)0.00232 (19)0.0274 (4)
H60.20370.3707−0.08600.033*
C70.19590 (18)0.24964 (19)0.03641 (18)0.0231 (3)
C80.23701 (18)0.02755 (19)0.02314 (17)0.0222 (3)
C90.28197 (18)−0.11933 (19)−0.05014 (18)0.0223 (3)
C100.23677 (19)−0.2044 (2)−0.19558 (19)0.0265 (3)
H100.1800−0.1671−0.24630.032*
C110.2777 (2)−0.3454 (2)−0.2632 (2)0.0315 (4)
H110.2461−0.4036−0.35920.038*
C120.3653 (2)−0.4000 (2)−0.1890 (2)0.0347 (4)
H120.3929−0.4939−0.23550.042*
C130.4117 (2)−0.3148 (2)−0.0455 (2)0.0344 (4)
H130.4706−0.35150.00410.041*
C140.3700 (2)−0.1747 (2)0.0242 (2)0.0286 (4)
H140.4009−0.11780.12060.034*
C150.29386 (18)0.10909 (19)0.41498 (17)0.0216 (3)
C160.4258 (2)0.1827 (2)0.3995 (2)0.0333 (4)
H160.44110.19140.31420.040*
C170.5347 (2)0.2429 (3)0.5131 (2)0.0412 (5)
H170.62330.29310.50410.049*
C180.5124 (2)0.2288 (2)0.6400 (2)0.0342 (4)
H180.58640.26840.71520.041*
C190.3803 (2)0.1560 (2)0.65465 (19)0.0287 (4)
H190.36550.14730.74000.034*
C200.26963 (19)0.09587 (19)0.54241 (18)0.0244 (3)
H200.18050.04740.55230.029*
U11U22U33U12U13U23
I0.02785 (7)0.02109 (7)0.03128 (7)0.00645 (4)0.00755 (5)0.01148 (5)
S0.02433 (19)0.02144 (19)0.02157 (18)0.00522 (15)0.00503 (15)0.01221 (15)
O10.0307 (6)0.0269 (6)0.0205 (5)0.0099 (5)0.0065 (5)0.0129 (5)
O20.0216 (6)0.0364 (7)0.0300 (6)0.0054 (5)0.0069 (5)0.0178 (6)
C10.0226 (7)0.0228 (8)0.0218 (7)0.0055 (6)0.0034 (6)0.0120 (6)
C20.0206 (7)0.0244 (8)0.0222 (7)0.0045 (6)0.0026 (6)0.0130 (6)
C30.0241 (8)0.0257 (8)0.0228 (8)0.0058 (6)0.0054 (6)0.0133 (7)
C40.0213 (8)0.0225 (8)0.0268 (8)0.0049 (6)0.0042 (6)0.0107 (7)
C50.0285 (8)0.0267 (9)0.0306 (9)0.0068 (7)0.0027 (7)0.0182 (7)
C60.0324 (9)0.0342 (9)0.0242 (8)0.0100 (7)0.0064 (7)0.0190 (7)
C70.0235 (8)0.0271 (8)0.0223 (8)0.0071 (6)0.0038 (6)0.0129 (7)
C80.0223 (7)0.0264 (8)0.0219 (8)0.0052 (6)0.0022 (6)0.0137 (7)
C90.0215 (7)0.0250 (8)0.0228 (8)0.0045 (6)0.0063 (6)0.0115 (7)
C100.0267 (8)0.0279 (9)0.0245 (8)0.0028 (7)0.0032 (7)0.0108 (7)
C110.0371 (10)0.0266 (9)0.0260 (9)−0.0001 (7)0.0091 (7)0.0070 (7)
C120.0409 (11)0.0231 (9)0.0413 (11)0.0096 (8)0.0169 (9)0.0118 (8)
C130.0364 (10)0.0333 (10)0.0414 (11)0.0150 (8)0.0092 (8)0.0201 (9)
C140.0316 (9)0.0296 (9)0.0266 (8)0.0098 (7)0.0038 (7)0.0121 (7)
C150.0225 (8)0.0233 (8)0.0227 (8)0.0081 (6)0.0039 (6)0.0117 (6)
C160.0260 (9)0.0531 (12)0.0292 (9)0.0036 (8)0.0057 (7)0.0262 (9)
C170.0238 (9)0.0654 (15)0.0401 (11)−0.0027 (9)0.0013 (8)0.0312 (11)
C180.0286 (9)0.0472 (11)0.0289 (9)0.0068 (8)−0.0010 (7)0.0179 (8)
C190.0370 (10)0.0330 (9)0.0218 (8)0.0109 (8)0.0069 (7)0.0151 (7)
C200.0272 (8)0.0239 (8)0.0264 (8)0.0071 (6)0.0079 (7)0.0133 (7)
I—C42.104 (2)C10—C111.391 (3)
I—O2i3.124 (1)C10—H100.9300
S—O21.497 (1)C11—C121.387 (3)
S—C11.768 (2)C11—H110.9300
S—C151.799 (2)C12—C131.386 (3)
O1—C81.377 (2)C12—H120.9300
O1—C71.378 (2)C13—C141.389 (3)
C1—C81.367 (2)C13—H130.9300
C1—C21.447 (2)C14—H140.9300
C2—C71.394 (2)C15—C161.388 (2)
C2—C31.397 (2)C15—C201.392 (2)
C3—C41.388 (2)C16—C171.387 (3)
C3—H30.9300C16—H160.9300
C4—C51.404 (2)C17—C181.386 (3)
C5—C61.389 (3)C17—H170.9300
C5—H50.9300C18—C191.382 (3)
C6—C71.387 (2)C18—H180.9300
C6—H60.9300C19—C201.389 (3)
C8—C91.463 (2)C19—H190.9300
C9—C141.397 (2)C20—H200.9300
C9—C101.401 (2)
C4—I—O2i165.84 (5)C11—C10—H10120.4
O2—S—C1107.63 (7)C9—C10—H10120.4
O2—S—C15106.00 (8)C12—C11—C10120.66 (17)
C1—S—C15100.57 (8)C12—C11—H11119.7
C8—O1—C7106.38 (12)C10—C11—H11119.7
C8—C1—C2107.02 (14)C13—C12—C11120.13 (17)
C8—C1—S123.64 (13)C13—C12—H12119.9
C2—C1—S128.38 (12)C11—C12—H12119.9
C7—C2—C3119.26 (15)C12—C13—C14119.94 (18)
C7—C2—C1104.91 (14)C12—C13—H13120.0
C3—C2—C1135.83 (15)C14—C13—H13120.0
C4—C3—C2117.47 (15)C13—C14—C9120.11 (17)
C4—C3—H3121.3C13—C14—H14119.9
C2—C3—H3121.3C9—C14—H14119.9
C3—C4—C5122.37 (16)C16—C15—C20120.95 (16)
C3—C4—I118.65 (12)C16—C15—S123.40 (13)
C5—C4—I118.96 (12)C20—C15—S115.34 (13)
C6—C5—C4120.55 (15)C17—C16—C15119.05 (17)
C6—C5—H5119.7C17—C16—H16120.5
C4—C5—H5119.7C15—C16—H16120.5
C7—C6—C5116.34 (16)C18—C17—C16120.50 (18)
C7—C6—H6121.8C18—C17—H17119.8
C5—C6—H6121.8C16—C17—H17119.8
O1—C7—C6125.17 (15)C19—C18—C17120.03 (18)
O1—C7—C2110.82 (14)C19—C18—H18120.0
C6—C7—C2124.00 (16)C17—C18—H18120.0
C1—C8—O1110.87 (14)C18—C19—C20120.30 (16)
C1—C8—C9133.30 (15)C18—C19—H19119.8
O1—C8—C9115.81 (14)C20—C19—H19119.8
C14—C9—C10119.94 (16)C19—C20—C15119.15 (16)
C14—C9—C8120.26 (15)C19—C20—H20120.4
C10—C9—C8119.80 (15)C15—C20—H20120.4
C11—C10—C9119.19 (17)
O2—S—C1—C8−134.10 (15)C7—O1—C8—C1−0.06 (18)
C15—S—C1—C8115.21 (15)C7—O1—C8—C9−178.86 (14)
O2—S—C1—C233.18 (17)C1—C8—C9—C14−39.3 (3)
C15—S—C1—C2−77.52 (16)O1—C8—C9—C14139.16 (16)
C8—C1—C2—C70.54 (18)C1—C8—C9—C10140.9 (2)
S—C1—C2—C7−168.40 (13)O1—C8—C9—C10−40.7 (2)
C8—C1—C2—C3−179.78 (19)C14—C9—C10—C111.5 (3)
S—C1—C2—C311.3 (3)C8—C9—C10—C11−178.63 (16)
C7—C2—C3—C4−0.6 (2)C9—C10—C11—C12−1.6 (3)
C1—C2—C3—C4179.73 (18)C10—C11—C12—C130.7 (3)
C2—C3—C4—C50.0 (2)C11—C12—C13—C140.2 (3)
C2—C3—C4—I178.71 (12)C12—C13—C14—C9−0.2 (3)
C3—C4—C5—C60.6 (3)C10—C9—C14—C13−0.7 (3)
I—C4—C5—C6−178.10 (13)C8—C9—C14—C13179.52 (17)
C4—C5—C6—C7−0.5 (3)O2—S—C15—C16−135.76 (16)
C8—O1—C7—C6179.37 (17)C1—S—C15—C16−23.80 (17)
C8—O1—C7—C20.42 (18)O2—S—C15—C2050.62 (14)
C5—C6—C7—O1−178.91 (16)C1—S—C15—C20162.58 (13)
C5—C6—C7—C2−0.1 (3)C20—C15—C16—C170.3 (3)
C3—C2—C7—O1179.66 (14)S—C15—C16—C17−172.99 (17)
C1—C2—C7—O1−0.59 (18)C15—C16—C17—C180.5 (3)
C3—C2—C7—C60.7 (3)C16—C17—C18—C19−0.8 (4)
C1—C2—C7—C6−179.56 (16)C17—C18—C19—C200.4 (3)
C2—C1—C8—O1−0.30 (19)C18—C19—C20—C150.4 (3)
S—C1—C8—O1169.29 (11)C16—C15—C20—C19−0.7 (3)
C2—C1—C8—C9178.21 (17)S—C15—C20—C19173.06 (13)
S—C1—C8—C9−12.2 (3)
D—H···AD—HH···AD···AD—H···A
C10—H10···O2ii0.932.533.438 (2)165
C19—H19···O1iii0.932.593.483 (2)162
C20—H20···O2iv0.932.533.412 (2)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10⋯O2i0.932.533.438 (2)165
C19—H19⋯O1ii0.932.593.483 (2)162
C20—H20⋯O2iii0.932.533.412 (2)159

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

  3 in total
  5 in total

1.  5-Chloro-2-phenyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-22

2.  2-(4-Fluoro-phen-yl)-5-iodo-7-methyl-3-phenyl-sulfinyl-1-benzo-furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-04

3.  5-Bromo-2-phenyl-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-03

4.  5-Chloro-2-(4-fluoro-phen-yl)-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-26

5.  2-(4-Bromo-phen-yl)-5-fluoro-3-phenyl-sulfinyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-31
  5 in total

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