Literature DB >> 21583429

Bis(1H-imidazole-κN)bis-(2-oxidopyridinium-3-carboxyl-ato-κO,O)cobalt(II).

Bing-Yu Zhang1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the mol-ecule of the title Co(II) complex, [Co(C(6)H(4)NO(3))(2)(C(3)H(4)N(2))(2)], the Co(II) atom is located on a twofold rotation axis and chelated by two oxidopyridiniumcarboxyl-ate anions and further cis-coordinated by two imidazole ligands in a distorted octa-hedral geometry. The shorter C-O bond distance of 1.260 (2) Å suggests electron delocalization between the oxido group and the pyridinium ring. The uncoordinated carboxyl-ate O atom links with the imidazole and pyridinium rings of adjacent mol-ecules via N-H⋯O hydrogen bonding. Weak C-H⋯O hydrogen bonding is also present in the crystal structure.

Entities:  

Year:  2009        PMID: 21583429      PMCID: PMC2977295          DOI: 10.1107/S1600536809028694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isostructural NiII complex, see: Zhang et al. (2009 ▶). For the shorter C—O bond distance between the pyridine ring and the hydr­oxy-O atom in 2-oxidopyridinium-3-carboxyl­ate complexes and in 2-hydroxy­pyridine­carboxyl­ate complexes, see: Yao et al. (2004 ▶); Yan & Hu (2007a ▶,b ▶); Wen & Liu (2007 ▶); Quintal et al. (2002 ▶). For the corresponding C—O bond distances in 2-hydroxy­benzencarboxylic acid and in metal complexes of 2-hydroxy­benzencarboxyl­ate, see: Munshi & Guru Row (2006 ▶); Su & Xu (2005 ▶); Li et al. (2005 ▶).

Experimental

Crystal data

[Co(C6H4NO3)2(C3H4N2)2] M = 471.30 Monoclinic, a = 16.594 (2) Å b = 10.0524 (12) Å c = 12.8271 (15) Å β = 111.407 (4)° V = 1992.1 (4) Å3 Z = 4 Mo Kα radiation μ = 0.91 mm−1 T = 294 K 0.40 × 0.30 × 0.26 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.665, T max = 0.790 10627 measured reflections 1824 independent reflections 1527 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.065 S = 1.07 1824 reflections 141 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809028694/hk2743sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809028694/hk2743Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H4NO3)2(C3H4N2)2]F(000) = 964
Mr = 471.30Dx = 1.571 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 4226 reflections
a = 16.594 (2) Åθ = 2.5–25.2°
b = 10.0524 (12) ŵ = 0.91 mm1
c = 12.8271 (15) ÅT = 294 K
β = 111.407 (4)°Block, pink
V = 1992.1 (4) Å30.40 × 0.30 × 0.26 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer1824 independent reflections
Radiation source: fine-focus sealed tube1527 reflections with I > 2σ(I)
graphiteRint = 0.034
Detector resolution: 10.00 pixels mm-1θmax = 25.4°, θmin = 2.4°
ω scansh = −20→20
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −12→12
Tmin = 0.665, Tmax = 0.790l = −14→15
10627 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0231P)2 + 1.9358P] where P = (Fo2 + 2Fc2)/3
1824 reflections(Δ/σ)max < 0.001
141 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co0.50000.24771 (3)0.25000.02958 (13)
N10.61270 (11)−0.12644 (16)0.30331 (13)0.0369 (4)
H10.6138−0.13910.23760.044*
N20.58362 (11)0.39282 (16)0.22623 (13)0.0348 (4)
N30.62322 (13)0.56271 (17)0.14899 (16)0.0468 (5)
H30.61980.63080.10700.056*
O10.56130 (10)0.24739 (13)0.42230 (11)0.0392 (4)
O20.62213 (10)0.16732 (14)0.59300 (10)0.0410 (4)
O30.58952 (9)0.09062 (13)0.25972 (10)0.0352 (3)
C10.59989 (12)0.00073 (18)0.33196 (15)0.0293 (4)
C20.60117 (12)0.01700 (18)0.44393 (15)0.0288 (4)
C30.61152 (14)−0.0923 (2)0.51100 (17)0.0375 (5)
H3A0.6115−0.08140.58300.045*
C40.62211 (16)−0.2203 (2)0.47472 (18)0.0454 (6)
H40.6278−0.29380.52090.055*
C50.62375 (16)−0.2340 (2)0.37099 (19)0.0449 (6)
H50.6325−0.31750.34570.054*
C60.59387 (12)0.15307 (19)0.48875 (15)0.0299 (4)
C70.55679 (15)0.4904 (2)0.15344 (18)0.0396 (5)
H70.49900.50710.11050.048*
C80.67219 (15)0.4046 (2)0.27010 (19)0.0458 (6)
H80.70940.34880.32420.055*
C90.69703 (16)0.5089 (2)0.2231 (2)0.0510 (6)
H90.75330.53810.23830.061*
U11U22U33U12U13U23
Co0.0402 (2)0.02722 (19)0.0222 (2)0.0000.01241 (16)0.000
N10.0554 (12)0.0342 (9)0.0257 (9)0.0042 (8)0.0204 (8)−0.0020 (7)
N20.0400 (11)0.0327 (9)0.0318 (9)0.0006 (8)0.0132 (8)0.0052 (7)
N30.0641 (14)0.0341 (10)0.0528 (12)−0.0039 (9)0.0340 (11)0.0065 (9)
O10.0589 (10)0.0309 (7)0.0245 (7)0.0071 (7)0.0115 (7)−0.0005 (6)
O20.0612 (10)0.0410 (8)0.0201 (7)0.0046 (7)0.0142 (7)−0.0032 (6)
O30.0529 (9)0.0334 (7)0.0254 (7)0.0071 (6)0.0214 (7)0.0040 (6)
C10.0330 (11)0.0313 (10)0.0254 (10)0.0008 (8)0.0129 (8)−0.0023 (8)
C20.0332 (11)0.0319 (10)0.0227 (10)0.0011 (8)0.0118 (8)−0.0005 (8)
C30.0507 (14)0.0394 (11)0.0271 (10)0.0019 (10)0.0196 (10)0.0012 (9)
C40.0715 (17)0.0337 (11)0.0357 (12)0.0057 (11)0.0250 (12)0.0072 (9)
C50.0686 (16)0.0295 (11)0.0415 (13)0.0051 (10)0.0259 (12)0.0002 (9)
C60.0332 (11)0.0354 (10)0.0243 (10)−0.0003 (9)0.0142 (8)−0.0014 (8)
C70.0446 (13)0.0367 (11)0.0375 (12)0.0002 (10)0.0149 (10)0.0041 (9)
C80.0411 (14)0.0475 (13)0.0471 (14)0.0035 (10)0.0141 (11)0.0018 (10)
C90.0435 (15)0.0493 (14)0.0666 (17)−0.0068 (11)0.0278 (13)−0.0092 (12)
Co—O1i2.0684 (13)O2—C61.253 (2)
Co—O12.0684 (13)O3—C11.260 (2)
Co—O3i2.1402 (13)C1—C21.438 (3)
Co—O32.1402 (13)C2—C31.367 (3)
Co—N22.1107 (16)C2—C61.506 (3)
Co—N2i2.1107 (16)C3—C41.401 (3)
N1—C51.357 (3)C3—H3A0.9300
N1—C11.368 (2)C4—C51.348 (3)
N1—H10.8600C4—H40.9300
N2—C71.315 (2)C5—H50.9300
N2—C81.374 (3)C7—H70.9300
N3—C71.339 (3)C8—C91.347 (3)
N3—C91.359 (3)C8—H80.9300
N3—H30.8600C9—H90.9300
O1—C61.258 (2)
O1i—Co—O1179.82 (7)O3—C1—C2126.95 (17)
O1i—Co—N286.54 (6)N1—C1—C2115.31 (16)
O1—Co—N293.59 (6)C3—C2—C1119.33 (17)
O1i—Co—N2i93.59 (6)C3—C2—C6119.94 (16)
O1—Co—N2i86.54 (6)C1—C2—C6120.71 (16)
N2—Co—N2i92.57 (9)C2—C3—C4122.10 (18)
O1i—Co—O3i82.90 (5)C2—C3—H3A119.0
O1—Co—O3i96.97 (5)C4—C3—H3A119.0
N2—Co—O3i168.64 (5)C5—C4—C3118.14 (19)
N2i—Co—O3i92.26 (6)C5—C4—H4120.9
O1i—Co—O396.97 (5)C3—C4—H4120.9
O1—Co—O382.90 (5)C4—C5—N1120.26 (19)
N2—Co—O392.26 (6)C4—C5—H5119.9
N2i—Co—O3168.64 (5)N1—C5—H5119.9
O3i—Co—O384.91 (8)O2—C6—O1122.54 (17)
C5—N1—C1124.81 (17)O2—C6—C2117.41 (17)
C5—N1—H1117.6O1—C6—C2120.05 (16)
C1—N1—H1117.6N2—C7—N3111.4 (2)
C7—N2—C8105.13 (18)N2—C7—H7124.3
C7—N2—Co123.24 (15)N3—C7—H7124.3
C8—N2—Co131.44 (14)C9—C8—N2109.9 (2)
C7—N3—C9107.46 (18)C9—C8—H8125.1
C7—N3—H3126.3N2—C8—H8125.1
C9—N3—H3126.3C8—C9—N3106.1 (2)
C6—O1—Co130.35 (12)C8—C9—H9126.9
C1—O3—Co118.52 (12)N3—C9—H9126.9
O3—C1—N1117.74 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2ii0.861.932.789 (2)177
N3—H3···O2iii0.862.042.806 (2)148
C3—H3A···O3iv0.932.433.341 (3)168
Table 1

Selected bond lengths (Å)

Co—O12.0684 (13)
Co—O32.1402 (13)
Co—N22.1107 (16)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.861.932.789 (2)177
N3—H3⋯O2ii0.862.042.806 (2)148
C3—H3A⋯O3iii0.932.433.341 (3)168

Symmetry codes: (i) ; (ii) ; (iii) .

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