Literature DB >> 21577574

N,N-Bis(2,6-difluoro-benz-yl)-1,3,4-thia-diazol-2-amine.

Hoong-Kun Fun, Wei-Ching Liew, B Chandrakantha, Arun M Isloor.   

Abstract

In the title compound, C(16)H(11)F(4)N(3)S, the dihedral angles between the thia-diazole ring and the difluorobenzyl rings are 81.95 (7) and 81.96 (7)°, whereas the dihedral angle between the difluorobenzyl rings is 11.41 (7)°. In the crystal structure, C-H⋯N and C-H⋯F inter-actions link the mol-ecules into two-dimensional arrays parallel to the bc plane.

Entities:  

Year:  2009        PMID: 21577574      PMCID: PMC2970007          DOI: 10.1107/S1600536809031675

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of pharmaceutically condensed heterocyclic thia­diazole derivatives as anti­microbials, see: Swamy et al. (2006 ▶). For the synthesis and anti-inflammatory, analgesic, ulcerogenic and lipid peroxidation activity of some new acetic acid derivatives, see: Amir & Shikha (2004 ▶). For new bis-amino­mercaptotriazoles and bis-triazolothia­diazo­les as possible anti­cancer agents, see: Holla et al. (2002 ▶). For the synthesis and biological evaluation of thia­diazole derivatives as a novel class of potential anti-tumor agents, see: Ibrahim (2009 ▶). For related structures, see: Wang et al. (2009a ▶,b ▶); Yin et al. (2008 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H11F4N3S M = 353.34 Orthorhombic, a = 32.6678 (6) Å b = 5.8515 (1) Å c = 7.8140 (2) Å V = 1493.69 (5) Å3 Z = 4 Mo Kα radiation μ = 0.26 mm−1 T = 100 K 0.46 × 0.33 × 0.14 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.887, T max = 0.965 17980 measured reflections 4796 independent reflections 4299 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.076 S = 1.02 4796 reflections 218 parameters 1 restraint H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.26 e Å−3 Absolute structure: Flack (1983 ▶), 1935 Friedel pairs Flack parameter: 0.20 (5) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809031675/tk2527sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809031675/tk2527Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H11F4N3SF(000) = 720
Mr = 353.34Dx = 1.571 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 9387 reflections
a = 32.6678 (6) Åθ = 2.9–33.7°
b = 5.8515 (1) ŵ = 0.26 mm1
c = 7.8140 (2) ÅT = 100 K
V = 1493.69 (5) Å3Block, pale-yellow
Z = 40.46 × 0.33 × 0.14 mm
Bruker SMART APEXII CCD area-detector diffractometer4796 independent reflections
Radiation source: fine-focus sealed tube4299 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 32.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −48→46
Tmin = 0.887, Tmax = 0.965k = −8→8
17980 measured reflectionsl = −11→11
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0345P)2 + 0.2893P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4796 reflectionsΔρmax = 0.23 e Å3
218 parametersΔρmin = −0.26 e Å3
1 restraintAbsolute structure: Flack (1983), 1935 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.20 (5)
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.794704 (10)0.52906 (6)−0.01577 (5)0.02346 (8)
F10.79830 (2)0.37874 (17)0.48808 (16)0.0338 (2)
F20.94005 (2)0.27091 (16)0.53340 (11)0.0261 (2)
F30.92412 (3)−0.07230 (15)0.24104 (14)0.0264 (2)
F40.91204 (3)0.60294 (17)−0.07755 (14)0.0338 (2)
N10.78098 (4)0.8994 (2)0.14916 (18)0.0236 (3)
N20.81456 (4)0.8012 (2)0.22916 (17)0.0209 (2)
N30.85771 (4)0.4805 (2)0.21110 (16)0.0190 (2)
C10.76794 (4)0.7789 (3)0.0214 (2)0.0249 (3)
H1A0.74580.8235−0.04550.030*
C20.82545 (4)0.6085 (2)0.15657 (18)0.0160 (2)
C30.87577 (4)0.5273 (2)0.3784 (2)0.0187 (3)
H3A0.86370.66550.42490.022*
H3B0.90490.55370.36470.022*
C40.86929 (4)0.3330 (2)0.50333 (18)0.0162 (2)
C50.83046 (4)0.2629 (3)0.5541 (2)0.0213 (3)
C60.82293 (5)0.0864 (3)0.6657 (2)0.0242 (3)
H6A0.79630.04680.69550.029*
C70.85629 (5)−0.0312 (3)0.7328 (2)0.0238 (3)
H7A0.8520−0.15230.80780.029*
C80.89596 (5)0.0308 (3)0.68863 (19)0.0220 (3)
H8A0.9184−0.04660.73340.026*
C90.90109 (4)0.2105 (2)0.57631 (19)0.0181 (3)
C100.87024 (4)0.2743 (2)0.1207 (2)0.0194 (3)
H10A0.85570.26560.01260.023*
H10B0.86270.14170.18820.023*
C110.91598 (4)0.2685 (2)0.08670 (19)0.0175 (3)
C120.94120 (4)0.0961 (2)0.14585 (18)0.0184 (3)
C130.98273 (5)0.0831 (3)0.1130 (2)0.0234 (3)
H13A0.9984−0.03740.15480.028*
C141.00032 (4)0.2553 (3)0.0158 (2)0.0260 (3)
H14A1.02820.2512−0.00720.031*
C150.97688 (5)0.4331 (3)−0.0475 (2)0.0272 (3)
H15A0.98860.5489−0.11250.033*
C160.93555 (4)0.4336 (2)−0.0113 (2)0.0218 (3)
U11U22U33U12U13U23
S10.01673 (15)0.03179 (18)0.02187 (15)0.00300 (13)−0.00547 (14)−0.00224 (18)
F10.0139 (4)0.0423 (5)0.0451 (5)0.0051 (4)−0.0022 (4)0.0137 (6)
F20.0124 (4)0.0360 (5)0.0298 (5)0.0007 (3)−0.0012 (3)0.0101 (4)
F30.0237 (4)0.0208 (4)0.0345 (5)0.0013 (3)0.0037 (4)0.0108 (4)
F40.0341 (5)0.0282 (5)0.0390 (5)0.0040 (4)−0.0034 (4)0.0175 (4)
N10.0206 (6)0.0248 (6)0.0253 (6)0.0062 (5)−0.0010 (5)0.0065 (5)
N20.0187 (6)0.0213 (6)0.0226 (6)0.0044 (4)−0.0020 (5)0.0032 (5)
N30.0181 (5)0.0192 (5)0.0196 (5)0.0039 (4)−0.0049 (4)−0.0013 (5)
C10.0165 (6)0.0339 (8)0.0243 (7)0.0059 (6)−0.0018 (5)0.0044 (6)
C20.0127 (6)0.0192 (6)0.0161 (5)−0.0015 (5)−0.0012 (4)0.0041 (5)
C30.0192 (6)0.0172 (6)0.0198 (6)−0.0007 (5)−0.0054 (5)0.0006 (5)
C40.0132 (5)0.0177 (6)0.0177 (6)0.0003 (4)−0.0022 (5)0.0000 (5)
C50.0150 (6)0.0230 (7)0.0258 (7)0.0015 (5)−0.0015 (5)0.0003 (6)
C60.0199 (7)0.0277 (8)0.0250 (7)−0.0054 (6)0.0019 (5)0.0003 (6)
C70.0296 (8)0.0218 (7)0.0200 (7)−0.0022 (6)0.0024 (6)0.0032 (6)
C80.0220 (7)0.0233 (7)0.0206 (7)0.0039 (6)−0.0031 (5)0.0030 (6)
C90.0141 (6)0.0208 (6)0.0193 (6)−0.0005 (5)−0.0004 (5)0.0001 (5)
C100.0167 (6)0.0180 (6)0.0235 (7)0.0011 (5)−0.0027 (5)−0.0023 (6)
C110.0167 (6)0.0176 (6)0.0181 (6)0.0001 (5)−0.0012 (5)0.0001 (5)
C120.0203 (6)0.0164 (6)0.0185 (6)−0.0009 (5)0.0014 (5)0.0005 (5)
C130.0201 (7)0.0243 (7)0.0259 (7)0.0049 (5)0.0009 (5)−0.0005 (6)
C140.0184 (6)0.0345 (8)0.0252 (8)−0.0026 (6)0.0044 (5)−0.0024 (7)
C150.0278 (8)0.0299 (8)0.0238 (8)−0.0075 (6)0.0042 (6)0.0053 (6)
C160.0252 (7)0.0191 (6)0.0211 (6)0.0009 (5)−0.0027 (6)0.0058 (7)
S1—C11.7278 (16)C6—C71.392 (2)
S1—C21.7431 (14)C6—H6A0.9300
F1—C51.3527 (16)C7—C81.389 (2)
F2—C91.3630 (15)C7—H7A0.9300
F3—C121.3548 (17)C8—C91.380 (2)
F4—C161.3566 (16)C8—H8A0.9300
N1—C11.295 (2)C10—C111.5179 (19)
N1—N21.3872 (16)C10—H10A0.9700
N2—C21.3114 (19)C10—H10B0.9700
N3—C21.3613 (17)C11—C121.3824 (19)
N3—C101.4570 (18)C11—C161.388 (2)
N3—C31.4598 (19)C12—C131.383 (2)
C1—H1A0.9300C13—C141.387 (2)
C3—C41.514 (2)C13—H13A0.9300
C3—H3A0.9700C14—C151.383 (2)
C3—H3B0.9700C14—H14A0.9300
C4—C91.3848 (18)C15—C161.380 (2)
C4—C51.3906 (19)C15—H15A0.9300
C5—C61.374 (2)
C1—S1—C286.35 (7)C9—C8—C7118.05 (14)
C1—N1—N2112.47 (13)C9—C8—H8A121.0
C2—N2—N1112.07 (13)C7—C8—H8A121.0
C2—N3—C10121.42 (12)F2—C9—C8117.87 (12)
C2—N3—C3119.33 (12)F2—C9—C4117.72 (12)
C10—N3—C3118.42 (11)C8—C9—C4124.41 (13)
N1—C1—S1115.07 (11)N3—C10—C11112.32 (11)
N1—C1—H1A122.5N3—C10—H10A109.1
S1—C1—H1A122.5C11—C10—H10A109.1
N2—C2—N3123.20 (13)N3—C10—H10B109.1
N2—C2—S1114.03 (10)C11—C10—H10B109.1
N3—C2—S1122.77 (11)H10A—C10—H10B107.9
N3—C3—C4112.33 (11)C12—C11—C16114.68 (12)
N3—C3—H3A109.1C12—C11—C10122.98 (12)
C4—C3—H3A109.1C16—C11—C10122.31 (13)
N3—C3—H3B109.1F3—C12—C11117.97 (12)
C4—C3—H3B109.1F3—C12—C13117.77 (13)
H3A—C3—H3B107.9C11—C12—C13124.25 (13)
C9—C4—C5114.46 (13)C12—C13—C14117.94 (14)
C9—C4—C3123.33 (11)C12—C13—H13A121.0
C5—C4—C3122.21 (12)C14—C13—H13A121.0
F1—C5—C6118.65 (13)C15—C14—C13120.85 (14)
F1—C5—C4116.87 (13)C15—C14—H14A119.6
C6—C5—C4124.48 (14)C13—C14—H14A119.6
C5—C6—C7118.08 (14)C16—C15—C14118.03 (14)
C5—C6—H6A121.0C16—C15—H15A121.0
C7—C6—H6A121.0C14—C15—H15A121.0
C8—C7—C6120.51 (14)F4—C16—C15118.49 (13)
C8—C7—H7A119.7F4—C16—C11117.26 (12)
C6—C7—H7A119.7C15—C16—C11124.24 (13)
C1—N1—N2—C20.11 (18)C7—C8—C9—C4−0.5 (2)
N2—N1—C1—S10.64 (17)C5—C4—C9—F2−179.53 (12)
C2—S1—C1—N1−0.89 (12)C3—C4—C9—F20.5 (2)
N1—N2—C2—N3179.58 (13)C5—C4—C9—C80.9 (2)
N1—N2—C2—S1−0.80 (15)C3—C4—C9—C8−179.07 (14)
C10—N3—C2—N2−176.38 (13)C2—N3—C10—C11131.34 (14)
C3—N3—C2—N214.2 (2)C3—N3—C10—C11−59.13 (17)
C10—N3—C2—S14.04 (19)N3—C10—C11—C12121.31 (15)
C3—N3—C2—S1−165.40 (10)N3—C10—C11—C16−60.72 (19)
C1—S1—C2—N20.94 (11)C16—C11—C12—F3−179.37 (13)
C1—S1—C2—N3−179.44 (13)C10—C11—C12—F3−1.3 (2)
C2—N3—C3—C4113.44 (14)C16—C11—C12—C130.1 (2)
C10—N3—C3—C4−56.32 (16)C10—C11—C12—C13178.17 (14)
N3—C3—C4—C9118.26 (15)F3—C12—C13—C14−179.93 (14)
N3—C3—C4—C5−61.69 (18)C11—C12—C13—C140.6 (2)
C9—C4—C5—F1179.22 (13)C12—C13—C14—C15−0.6 (2)
C3—C4—C5—F1−0.8 (2)C13—C14—C15—C16−0.1 (2)
C9—C4—C5—C6−0.6 (2)C14—C15—C16—F4−177.79 (14)
C3—C4—C5—C6179.38 (14)C14—C15—C16—C110.9 (2)
F1—C5—C6—C7−179.92 (14)C12—C11—C16—F4177.85 (13)
C4—C5—C6—C7−0.1 (2)C10—C11—C16—F4−0.3 (2)
C5—C6—C7—C80.6 (2)C12—C11—C16—C15−0.9 (2)
C6—C7—C8—C9−0.3 (2)C10—C11—C16—C15−178.99 (15)
C7—C8—C9—F2179.95 (13)
D—H···AD—HH···AD···AD—H···A
C1—H1A···N1i0.932.583.392 (2)146
C3—H3A···N20.972.362.8155 (18)108
C3—H3B···F20.972.412.8508 (15)107
C3—H3B···F3ii0.972.473.0226 (16)116
C8—H8A···F4iii0.932.543.144 (2)123
C10—H10A···S10.972.533.0738 (14)115
C10—H10B···F30.972.402.8453 (16)107
C10—H10B···N2iv0.972.563.4191 (17)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯N1i0.932.583.392 (2)146
C3—H3B⋯F3ii0.972.473.0226 (16)116
C8—H8A⋯F4iii0.932.543.144 (2)123
C10—H10B⋯N2iv0.972.563.4191 (17)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  9 in total

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  New bis-aminomercaptotriazoles and bis-triazolothiadiazoles as possible anticancer agents.

Authors:  B Shivarama Holla; K Narayana Poojary; B Sooryanarayana Rao; M K Shivananda
Journal:  Eur J Med Chem       Date:  2002-06       Impact factor: 6.514

3.  5-(2-Bromo-phen-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Li-He Yin; Rong Wan; Yao Wang; Feng Han; Jin-Tang Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

4.  5-(3-Fluoro-phen-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Yao Wang; Rong Wan; Feng Han; Peng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

5.  Synthesis and biological evaluation of 3,6-disubstituted [1,2,4]triazolo[3,4-b][1,3,4]thiadiazole derivatives as a novel class of potential anti-tumor agents.

Authors:  D A Ibrahim
Journal:  Eur J Med Chem       Date:  2009-01-19       Impact factor: 6.514

6.  Synthesis and anti-inflammatory, analgesic, ulcerogenic and lipid peroxidation activities of some new 2-[(2,6-dichloroanilino) phenyl]acetic acid derivatives.

Authors:  Mohd Amir; Kumar Shikha
Journal:  Eur J Med Chem       Date:  2004-06       Impact factor: 6.514

7.  Synthesis of pharmaceutically important condensed heterocyclic 4,6-disubstituted-1,2,4-triazolo-1,3,4-thiadiazole derivatives as antimicrobials.

Authors:  S Nanjunda Swamy; B S Priya; B Prabhuswamy; B H Doreswamy; J Shashidhara Prasad; Kanchugarakoppal S Rangappa
Journal:  Eur J Med Chem       Date:  2006-03-10       Impact factor: 6.514

8.  5-(2,4-Dichloro-phenoxy-meth-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Yao Wang; Rong Wan; Feng Han; Peng Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-04

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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