| Literature DB >> 23125815 |
Magdalena Quezada-Miriel1, Alcives Avila-Sorrosa, Juan Manuel German-Acacio, Reyna Reyes-Martínez, David Morales-Morales.
Abstract
Crystals of the title compound were obtained as a 1:1 dimethyl sulfoxide solvate, C(20)H(16)N(2)O(2)·C(2)H(6)O. The mol-ecular conformation of the organic mol-ecule is similar to that in the previously reported unsolvated structure [Eltayeb et al. (2009 ▶). Acta Cryst. E65, o1374-o1375]. Thus, the dihedral angles formed by the benzimidazole moiety with the two benzene rings are 57.54 (4) and 76.22 (5)°, and the dihedral angle between the benzene rings is 89.23 (5)°. In the crystal, a three-dimensional network features O-H⋯O, O-H⋯N and O-H⋯S hydrogen bonds, as well as C-H⋯O and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 23125815 PMCID: PMC3470402 DOI: 10.1107/S1600536812040275
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H16N2O2·C2H6OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 4929 reflections | |
| θ = 2.5–25.4° | |
| µ = 0.19 mm−1 | |
| α = 85.399 (2)° | |
| β = 71.947 (2)° | Prism, colourless |
| γ = 77.442 (2)° | 0.36 × 0.24 × 0.20 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 3656 independent reflections |
| Radiation source: fine-focus sealed tube | 2912 reflections with |
| Graphite monochromator | |
| Detector resolution: 0.83 pixels mm-1 | θmax = 25.4°, θmin = 1.6° |
| ω scans | |
| Absorption correction: analytical ( | |
| 8327 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3656 reflections | (Δ/σ)max < 0.001 |
| 261 parameters | Δρmax = 0.23 e Å−3 |
| 2 restraints | Δρmin = −0.32 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.19023 (5) | 0.03592 (5) | 0.01994 (4) | 0.05482 (17) | |
| O1 | 0.06161 (15) | 0.77881 (14) | 0.21845 (10) | 0.0553 (3) | |
| H1 | −0.002 (2) | 0.8399 (19) | 0.2668 (13) | 0.066* | |
| O2 | 0.15779 (16) | 0.67344 (14) | 0.95005 (9) | 0.0580 (3) | |
| H2 | 0.201 (2) | 0.7438 (18) | 0.9583 (16) | 0.070* | |
| O3 | 0.29883 (16) | −0.10268 (15) | −0.03524 (10) | 0.0635 (4) | |
| N1 | 0.31522 (15) | 0.88121 (14) | 0.49775 (10) | 0.0394 (3) | |
| C2 | 0.21131 (18) | 0.90591 (18) | 0.59903 (12) | 0.0393 (4) | |
| N3 | 0.15587 (16) | 1.04883 (15) | 0.61919 (10) | 0.0431 (3) | |
| C4 | 0.2058 (2) | 1.27426 (19) | 0.50197 (15) | 0.0524 (4) | |
| H4 | 0.1374 | 1.3442 | 0.5519 | 0.063* | |
| C5 | 0.2900 (2) | 1.3174 (2) | 0.40181 (16) | 0.0585 (5) | |
| H5 | 0.2778 | 1.4182 | 0.3837 | 0.070* | |
| C6 | 0.3932 (2) | 1.2133 (2) | 0.32689 (15) | 0.0590 (5) | |
| H6 | 0.4492 | 1.2463 | 0.2600 | 0.071* | |
| C7 | 0.4145 (2) | 1.0629 (2) | 0.34927 (14) | 0.0526 (4) | |
| H7 | 0.4840 | 0.9934 | 0.2994 | 0.063* | |
| C8 | 0.32694 (19) | 1.01973 (18) | 0.45009 (13) | 0.0417 (4) | |
| C9 | 0.22605 (19) | 1.12258 (18) | 0.52616 (13) | 0.0428 (4) | |
| C10 | 0.4119 (2) | 0.74040 (19) | 0.45014 (13) | 0.0455 (4) | |
| H10A | 0.3916 | 0.6610 | 0.5026 | 0.055* | |
| H10B | 0.5254 | 0.7442 | 0.4324 | 0.055* | |
| C11 | 0.37785 (18) | 0.70334 (17) | 0.35053 (12) | 0.0389 (4) | |
| C12 | 0.23086 (19) | 0.75994 (17) | 0.33238 (12) | 0.0400 (4) | |
| H12 | 0.1509 | 0.8236 | 0.3818 | 0.048* | |
| C13 | 0.2017 (2) | 0.72253 (17) | 0.24104 (12) | 0.0421 (4) | |
| C14 | 0.3202 (2) | 0.62518 (19) | 0.16856 (13) | 0.0506 (4) | |
| H14 | 0.3013 | 0.5981 | 0.1077 | 0.061* | |
| C15 | 0.4652 (2) | 0.5692 (2) | 0.18709 (14) | 0.0537 (5) | |
| H15 | 0.5444 | 0.5039 | 0.1383 | 0.064* | |
| C16 | 0.4962 (2) | 0.60800 (19) | 0.27712 (13) | 0.0482 (4) | |
| H16 | 0.5959 | 0.5702 | 0.2881 | 0.058* | |
| C17 | 0.16366 (18) | 0.78669 (18) | 0.67598 (12) | 0.0404 (4) | |
| C18 | 0.18420 (18) | 0.78701 (17) | 0.77632 (12) | 0.0410 (4) | |
| H18 | 0.2303 | 0.8601 | 0.7927 | 0.049* | |
| C19 | 0.13664 (19) | 0.67954 (18) | 0.85205 (12) | 0.0429 (4) | |
| C20 | 0.0629 (2) | 0.57380 (19) | 0.82858 (14) | 0.0498 (4) | |
| H20 | 0.0278 | 0.5028 | 0.8798 | 0.060* | |
| C21 | 0.0419 (2) | 0.5743 (2) | 0.72924 (15) | 0.0554 (5) | |
| H21 | −0.0072 | 0.5029 | 0.7136 | 0.066* | |
| C22 | 0.0925 (2) | 0.6792 (2) | 0.65240 (14) | 0.0524 (4) | |
| H22 | 0.0788 | 0.6777 | 0.5852 | 0.063* | |
| C23 | 0.2768 (3) | 0.0778 (2) | 0.11599 (16) | 0.0656 (5) | |
| H23A | 0.2826 | −0.0043 | 0.1655 | 0.098* | |
| H23B | 0.2112 | 0.1656 | 0.1540 | 0.098* | |
| H23C | 0.3835 | 0.0949 | 0.0804 | 0.098* | |
| C24 | 0.2345 (3) | 0.1831 (3) | −0.07215 (18) | 0.0875 (7) | |
| H24A | 0.3493 | 0.1756 | −0.0984 | 0.131* | |
| H24B | 0.1844 | 0.2768 | −0.0372 | 0.131* | |
| H24C | 0.1936 | 0.1767 | −0.1309 | 0.131* |
| S1 | 0.0502 (3) | 0.0617 (3) | 0.0535 (3) | −0.0095 (2) | −0.0182 (2) | −0.0014 (2) |
| O1 | 0.0558 (8) | 0.0622 (8) | 0.0513 (7) | −0.0008 (6) | −0.0261 (6) | −0.0111 (6) |
| O2 | 0.0754 (9) | 0.0598 (8) | 0.0412 (7) | −0.0147 (7) | −0.0218 (6) | 0.0059 (6) |
| O3 | 0.0678 (8) | 0.0618 (8) | 0.0617 (8) | −0.0089 (7) | −0.0206 (7) | −0.0126 (6) |
| N1 | 0.0410 (7) | 0.0417 (8) | 0.0385 (7) | −0.0093 (6) | −0.0155 (6) | −0.0009 (6) |
| C2 | 0.0398 (8) | 0.0451 (9) | 0.0378 (8) | −0.0094 (7) | −0.0176 (7) | −0.0025 (7) |
| N3 | 0.0457 (8) | 0.0430 (8) | 0.0430 (7) | −0.0095 (6) | −0.0160 (6) | −0.0011 (6) |
| C4 | 0.0572 (11) | 0.0447 (10) | 0.0618 (11) | −0.0121 (8) | −0.0259 (9) | −0.0007 (8) |
| C5 | 0.0646 (12) | 0.0502 (11) | 0.0734 (13) | −0.0230 (10) | −0.0350 (11) | 0.0155 (10) |
| C6 | 0.0592 (11) | 0.0679 (13) | 0.0573 (11) | −0.0285 (10) | −0.0220 (10) | 0.0174 (10) |
| C7 | 0.0501 (10) | 0.0625 (12) | 0.0474 (10) | −0.0175 (9) | −0.0145 (8) | 0.0022 (9) |
| C8 | 0.0422 (9) | 0.0468 (9) | 0.0429 (9) | −0.0135 (7) | −0.0198 (7) | 0.0019 (7) |
| C9 | 0.0442 (9) | 0.0454 (9) | 0.0465 (9) | −0.0134 (7) | −0.0218 (8) | 0.0006 (7) |
| C10 | 0.0413 (9) | 0.0474 (9) | 0.0479 (9) | −0.0035 (7) | −0.0168 (8) | −0.0021 (8) |
| C11 | 0.0409 (8) | 0.0348 (8) | 0.0392 (8) | −0.0087 (7) | −0.0098 (7) | 0.0028 (7) |
| C12 | 0.0398 (8) | 0.0372 (8) | 0.0406 (9) | −0.0054 (7) | −0.0093 (7) | −0.0046 (7) |
| C13 | 0.0478 (9) | 0.0380 (9) | 0.0420 (9) | −0.0103 (7) | −0.0154 (7) | 0.0023 (7) |
| C14 | 0.0649 (12) | 0.0473 (10) | 0.0381 (9) | −0.0087 (9) | −0.0138 (8) | −0.0057 (8) |
| C15 | 0.0560 (11) | 0.0495 (10) | 0.0446 (10) | 0.0003 (9) | −0.0052 (8) | −0.0069 (8) |
| C16 | 0.0414 (9) | 0.0478 (10) | 0.0490 (10) | −0.0033 (8) | −0.0086 (8) | 0.0003 (8) |
| C17 | 0.0382 (8) | 0.0424 (9) | 0.0413 (9) | −0.0068 (7) | −0.0136 (7) | −0.0012 (7) |
| C18 | 0.0394 (8) | 0.0409 (9) | 0.0427 (9) | −0.0065 (7) | −0.0126 (7) | −0.0035 (7) |
| C19 | 0.0416 (9) | 0.0419 (9) | 0.0412 (9) | −0.0003 (7) | −0.0120 (7) | −0.0013 (7) |
| C20 | 0.0529 (10) | 0.0400 (9) | 0.0506 (10) | −0.0088 (8) | −0.0085 (8) | 0.0042 (8) |
| C21 | 0.0616 (11) | 0.0486 (10) | 0.0621 (11) | −0.0227 (9) | −0.0190 (9) | −0.0030 (9) |
| C22 | 0.0604 (11) | 0.0569 (11) | 0.0483 (10) | −0.0207 (9) | −0.0222 (9) | −0.0011 (8) |
| C23 | 0.0727 (13) | 0.0642 (13) | 0.0660 (13) | −0.0122 (10) | −0.0292 (11) | −0.0068 (10) |
| C24 | 0.0954 (18) | 0.0770 (16) | 0.0777 (16) | −0.0072 (14) | −0.0207 (14) | 0.0205 (13) |
| S1—O3 | 1.5040 (14) | C11—C12 | 1.383 (2) |
| S1—C24 | 1.768 (2) | C11—C16 | 1.383 (2) |
| S1—C23 | 1.7739 (18) | C12—C13 | 1.388 (2) |
| O1—C13 | 1.353 (2) | C12—H12 | 0.9300 |
| O1—H1 | 0.857 (9) | C13—C14 | 1.387 (2) |
| O2—C19 | 1.3541 (19) | C14—C15 | 1.368 (3) |
| O2—H2 | 0.848 (9) | C14—H14 | 0.9300 |
| N1—C2 | 1.3689 (19) | C15—C16 | 1.385 (2) |
| N1—C8 | 1.384 (2) | C15—H15 | 0.9300 |
| N1—C10 | 1.456 (2) | C16—H16 | 0.9300 |
| C2—N3 | 1.317 (2) | C17—C22 | 1.385 (2) |
| C2—C17 | 1.471 (2) | C17—C18 | 1.388 (2) |
| N3—C9 | 1.387 (2) | C18—C19 | 1.382 (2) |
| C4—C5 | 1.374 (3) | C18—H18 | 0.9300 |
| C4—C9 | 1.391 (2) | C19—C20 | 1.386 (2) |
| C4—H4 | 0.9300 | C20—C21 | 1.375 (2) |
| C5—C6 | 1.392 (3) | C20—H20 | 0.9300 |
| C5—H5 | 0.9300 | C21—C22 | 1.380 (2) |
| C6—C7 | 1.375 (3) | C21—H21 | 0.9300 |
| C6—H6 | 0.9300 | C22—H22 | 0.9300 |
| C7—C8 | 1.390 (2) | C23—H23A | 0.9600 |
| C7—H7 | 0.9300 | C23—H23B | 0.9600 |
| C8—C9 | 1.388 (2) | C23—H23C | 0.9600 |
| C10—C11 | 1.512 (2) | C24—H24A | 0.9600 |
| C10—H10A | 0.9700 | C24—H24B | 0.9600 |
| C10—H10B | 0.9700 | C24—H24C | 0.9600 |
| O3—S1—C24 | 105.19 (10) | O1—C13—C14 | 117.93 (14) |
| O3—S1—C23 | 106.18 (9) | O1—C13—C12 | 122.59 (14) |
| C24—S1—C23 | 98.83 (11) | C14—C13—C12 | 119.47 (15) |
| C13—O1—H1 | 110.5 (14) | C15—C14—C13 | 119.66 (15) |
| C19—O2—H2 | 111.5 (14) | C15—C14—H14 | 120.2 |
| C2—N1—C8 | 106.73 (13) | C13—C14—H14 | 120.2 |
| C2—N1—C10 | 128.31 (13) | C14—C15—C16 | 121.20 (16) |
| C8—N1—C10 | 124.60 (13) | C14—C15—H15 | 119.4 |
| N3—C2—N1 | 112.33 (14) | C16—C15—H15 | 119.4 |
| N3—C2—C17 | 123.64 (14) | C11—C16—C15 | 119.50 (16) |
| N1—C2—C17 | 124.01 (14) | C11—C16—H16 | 120.3 |
| C2—N3—C9 | 105.51 (13) | C15—C16—H16 | 120.3 |
| C5—C4—C9 | 117.81 (18) | C22—C17—C18 | 119.58 (15) |
| C5—C4—H4 | 121.1 | C22—C17—C2 | 121.67 (14) |
| C9—C4—H4 | 121.1 | C18—C17—C2 | 118.67 (14) |
| C4—C5—C6 | 121.35 (17) | C19—C18—C17 | 120.52 (15) |
| C4—C5—H5 | 119.3 | C19—C18—H18 | 119.7 |
| C6—C5—H5 | 119.3 | C17—C18—H18 | 119.7 |
| C7—C6—C5 | 121.67 (17) | O2—C19—C18 | 122.55 (15) |
| C7—C6—H6 | 119.2 | O2—C19—C20 | 117.87 (15) |
| C5—C6—H6 | 119.2 | C18—C19—C20 | 119.58 (15) |
| C6—C7—C8 | 116.73 (18) | C21—C20—C19 | 119.72 (16) |
| C6—C7—H7 | 121.6 | C21—C20—H20 | 120.1 |
| C8—C7—H7 | 121.6 | C19—C20—H20 | 120.1 |
| N1—C8—C9 | 105.65 (14) | C20—C21—C22 | 120.98 (16) |
| N1—C8—C7 | 132.22 (16) | C20—C21—H21 | 119.5 |
| C9—C8—C7 | 122.13 (16) | C22—C21—H21 | 119.5 |
| N3—C9—C8 | 109.77 (14) | C21—C22—C17 | 119.58 (16) |
| N3—C9—C4 | 129.92 (16) | C21—C22—H22 | 120.2 |
| C8—C9—C4 | 120.29 (16) | C17—C22—H22 | 120.2 |
| N1—C10—C11 | 113.71 (13) | S1—C23—H23A | 109.5 |
| N1—C10—H10A | 108.8 | S1—C23—H23B | 109.5 |
| C11—C10—H10A | 108.8 | H23A—C23—H23B | 109.5 |
| N1—C10—H10B | 108.8 | S1—C23—H23C | 109.5 |
| C11—C10—H10B | 108.8 | H23A—C23—H23C | 109.5 |
| H10A—C10—H10B | 107.7 | H23B—C23—H23C | 109.5 |
| C12—C11—C16 | 119.56 (15) | S1—C24—H24A | 109.5 |
| C12—C11—C10 | 121.69 (14) | S1—C24—H24B | 109.5 |
| C16—C11—C10 | 118.74 (14) | H24A—C24—H24B | 109.5 |
| C11—C12—C13 | 120.60 (15) | S1—C24—H24C | 109.5 |
| C11—C12—H12 | 119.7 | H24A—C24—H24C | 109.5 |
| C13—C12—H12 | 119.7 | H24B—C24—H24C | 109.5 |
| C8—N1—C2—N3 | 0.23 (17) | N1—C10—C11—C16 | 156.07 (14) |
| C10—N1—C2—N3 | 173.56 (13) | C16—C11—C12—C13 | −0.3 (2) |
| C8—N1—C2—C17 | 178.88 (13) | C10—C11—C12—C13 | −179.05 (14) |
| C10—N1—C2—C17 | −7.8 (2) | C11—C12—C13—O1 | −177.93 (14) |
| N1—C2—N3—C9 | 0.35 (17) | C11—C12—C13—C14 | 1.2 (2) |
| C17—C2—N3—C9 | −178.30 (13) | O1—C13—C14—C15 | 178.17 (16) |
| C9—C4—C5—C6 | −0.4 (3) | C12—C13—C14—C15 | −1.0 (2) |
| C4—C5—C6—C7 | 0.6 (3) | C13—C14—C15—C16 | 0.0 (3) |
| C5—C6—C7—C8 | 0.5 (3) | C12—C11—C16—C15 | −0.7 (2) |
| C2—N1—C8—C9 | −0.70 (16) | C10—C11—C16—C15 | 178.00 (15) |
| C10—N1—C8—C9 | −174.35 (12) | C14—C15—C16—C11 | 1.0 (3) |
| C2—N1—C8—C7 | 179.60 (16) | N3—C2—C17—C22 | 121.37 (18) |
| C10—N1—C8—C7 | 6.0 (3) | N1—C2—C17—C22 | −57.1 (2) |
| C6—C7—C8—N1 | 177.93 (16) | N3—C2—C17—C18 | −55.6 (2) |
| C6—C7—C8—C9 | −1.7 (2) | N1—C2—C17—C18 | 125.91 (16) |
| C2—N3—C9—C8 | −0.81 (17) | C22—C17—C18—C19 | 1.1 (2) |
| C2—N3—C9—C4 | 177.74 (16) | C2—C17—C18—C19 | 178.10 (14) |
| N1—C8—C9—N3 | 0.94 (16) | C17—C18—C19—O2 | 178.41 (14) |
| C7—C8—C9—N3 | −179.32 (14) | C17—C18—C19—C20 | −2.2 (2) |
| N1—C8—C9—C4 | −177.77 (14) | O2—C19—C20—C21 | −178.78 (15) |
| C7—C8—C9—C4 | 2.0 (2) | C18—C19—C20—C21 | 1.8 (2) |
| C5—C4—C9—N3 | −179.26 (16) | C19—C20—C21—C22 | −0.3 (3) |
| C5—C4—C9—C8 | −0.8 (2) | C20—C21—C22—C17 | −0.8 (3) |
| C2—N1—C10—C11 | 121.77 (16) | C18—C17—C22—C21 | 0.4 (2) |
| C8—N1—C10—C11 | −66.00 (19) | C2—C17—C22—C21 | −176.51 (16) |
| N1—C10—C11—C12 | −25.2 (2) |
| H··· | ||||
| O2—H2···O3i | 0.85 (1) | 1.83 (1) | 2.6804 (19) | 176 (2) |
| O2—H2···S1i | 0.85 (1) | 2.84 (1) | 3.6209 (14) | 154 (2) |
| O1—H1···N3ii | 0.86 (1) | 1.88 (2) | 2.7316 (19) | 172 (2) |
| C18—H18···O3i | 0.93 | 2.58 | 3.260 (2) | 130 |
| C23—H23 | 0.96 | 2.72 | 3.643 (3) | 162 |
| C10—H10 | 0.97 | 2.95 | 3.622 (2) | 127 |
| C5—H5··· | 0.93 | 2.76 | 3.624 (2) | 156 |
| C23—H23 | 0.96 | 2.86 | 3.679 (2) | 144 |
Hydrogen-bond geometry (Å, °)
Cg1, Cg2 and Cg3 are the centroids of the C4–C9, C11–C16 and C17–C22 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O2—H2⋯O3i | 0.85 (1) | 1.83 (1) | 2.6804 (19) | 176 (2) |
| O2—H2⋯S1i | 0.85 (1) | 2.84 (1) | 3.6209 (14) | 154 (2) |
| O1—H1⋯N3ii | 0.86 (1) | 1.88 (2) | 2.7316 (19) | 172 (2) |
| C18—H18⋯O3i | 0.93 | 2.58 | 3.260 (2) | 130 |
| C23—H23 | 0.96 | 2.72 | 3.643 (3) | 162 |
| C10—H10 | 0.97 | 2.95 | 3.622 (2) | 127 |
| C5—H5⋯ | 0.93 | 2.76 | 3.624 (2) | 156 |
| C23—H23 | 0.96 | 2.86 | 3.679 (2) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .