| Literature DB >> 21583211 |
Jing Dai1.
Abstract
In the title compound, C(11)H(15)N(3) (2+)·2NO(3) (-), one of the imidazole N atoms and the N atom of the pyrrolidine ring are protonated. The pyrrolidine ring adopts an envelope conformation, with the C atom carrying the benzoimidazolium substituent as the flap atom. In the crystal structure, cations and anions are linked through N-H⋯O hydrogen bonds, forming chains that run parallel to the c axis.Entities:
Year: 2009 PMID: 21583211 PMCID: PMC2969558 DOI: 10.1107/S1600536809018558
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H15N32+·2NO3− | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3275 reflections |
| θ = 3.2–27.5° | |
| µ = 0.12 mm−1 | |
| β = 127.18 (1)° | Block, colourless |
| 0.35 × 0.30 × 0.15 mm | |
| Rigaku Mercury2 diffractometer | 3276 independent reflections |
| Radiation source: fine-focus sealed tube | 2195 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 14543 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3276 reflections | (Δ/σ)max < 0.001 |
| 199 parameters | Δρmax = 0.31 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N3 | 0.66938 (10) | 0.39290 (15) | 0.56483 (15) | 0.0433 (4) | |
| H3A | 0.6966 | 0.3290 | 0.5937 | 0.052* | |
| N4 | 0.63804 (11) | 0.58040 (17) | 0.53606 (17) | 0.0513 (5) | |
| H4A | 0.6414 | 0.6572 | 0.5428 | 0.062* | |
| N5 | 0.83307 (9) | 0.45350 (16) | 0.71441 (14) | 0.0429 (4) | |
| H5A | 0.8163 | 0.4119 | 0.6506 | 0.052* | |
| H5B | 0.8425 | 0.4016 | 0.7686 | 0.052* | |
| C1 | 0.57133 (13) | 0.5163 (2) | 0.4595 (2) | 0.0500 (6) | |
| C2 | 0.49697 (15) | 0.5521 (3) | 0.3784 (3) | 0.0709 (8) | |
| H2 | 0.4832 | 0.6325 | 0.3664 | 0.085* | |
| C3 | 0.44437 (16) | 0.4628 (3) | 0.3162 (3) | 0.0778 (9) | |
| H3 | 0.3939 | 0.4834 | 0.2599 | 0.093* | |
| C4 | 0.46486 (16) | 0.3430 (3) | 0.3353 (2) | 0.0725 (8) | |
| H4 | 0.4273 | 0.2856 | 0.2920 | 0.087* | |
| C5 | 0.53812 (15) | 0.3057 (2) | 0.4155 (2) | 0.0593 (7) | |
| H5 | 0.5513 | 0.2250 | 0.4276 | 0.071* | |
| C6 | 0.59181 (12) | 0.3961 (2) | 0.47789 (19) | 0.0448 (5) | |
| C7 | 0.69499 (12) | 0.50468 (19) | 0.59632 (18) | 0.0418 (5) | |
| C8 | 0.77457 (13) | 0.54335 (19) | 0.6904 (2) | 0.0465 (6) | |
| H8 | 0.7785 | 0.5530 | 0.7602 | 0.056* | |
| C9 | 0.80026 (15) | 0.6590 (2) | 0.6698 (2) | 0.0616 (7) | |
| H9A | 0.7799 | 0.7281 | 0.6831 | 0.074* | |
| H9B | 0.7852 | 0.6626 | 0.5926 | 0.074* | |
| C10 | 0.88635 (15) | 0.6521 (2) | 0.7577 (2) | 0.0617 (7) | |
| H10A | 0.9112 | 0.7044 | 0.7367 | 0.074* | |
| H10B | 0.9022 | 0.6745 | 0.8331 | 0.074* | |
| C11 | 0.90467 (14) | 0.5220 (2) | 0.7552 (2) | 0.0556 (6) | |
| H11A | 0.9471 | 0.4953 | 0.8308 | 0.067* | |
| H11B | 0.9174 | 0.5107 | 0.7030 | 0.067* | |
| O1 | 0.64618 (11) | 0.82051 (14) | 0.60914 (14) | 0.0612 (5) | |
| O2 | 0.58007 (14) | 0.83408 (18) | 0.42662 (16) | 0.0852 (7) | |
| O3 | 0.59348 (11) | 0.98868 (15) | 0.52487 (15) | 0.0672 (5) | |
| N1 | 0.60605 (11) | 0.88315 (18) | 0.51830 (16) | 0.0492 (5) | |
| O4 | 0.74570 (10) | 0.68205 (14) | 0.85048 (13) | 0.0533 (4) | |
| O5 | 0.81397 (9) | 0.66960 (14) | 1.03479 (13) | 0.0513 (4) | |
| O6 | 0.74016 (11) | 0.52300 (15) | 0.93113 (17) | 0.0698 (5) | |
| N2 | 0.76639 (11) | 0.62317 (16) | 0.93912 (16) | 0.0447 (5) |
| N3 | 0.0448 (10) | 0.0328 (9) | 0.0462 (10) | 0.0007 (8) | 0.0243 (9) | −0.0039 (8) |
| N4 | 0.0516 (12) | 0.0344 (10) | 0.0625 (13) | 0.0033 (9) | 0.0316 (11) | −0.0006 (9) |
| N5 | 0.0440 (10) | 0.0434 (10) | 0.0335 (9) | −0.0035 (8) | 0.0193 (8) | −0.0069 (8) |
| C1 | 0.0441 (13) | 0.0517 (14) | 0.0519 (14) | 0.0021 (11) | 0.0278 (12) | 0.0013 (11) |
| C2 | 0.0538 (17) | 0.0731 (19) | 0.0754 (19) | 0.0149 (14) | 0.0336 (15) | 0.0152 (15) |
| C3 | 0.0405 (15) | 0.110 (3) | 0.0671 (19) | 0.0017 (17) | 0.0243 (14) | 0.0035 (18) |
| C4 | 0.0516 (17) | 0.092 (2) | 0.0664 (18) | −0.0206 (16) | 0.0319 (15) | −0.0162 (17) |
| C5 | 0.0569 (16) | 0.0599 (16) | 0.0629 (16) | −0.0148 (13) | 0.0371 (14) | −0.0149 (13) |
| C6 | 0.0439 (13) | 0.0464 (13) | 0.0459 (13) | −0.0027 (10) | 0.0280 (11) | −0.0055 (10) |
| C7 | 0.0455 (13) | 0.0349 (11) | 0.0445 (12) | −0.0014 (9) | 0.0270 (11) | −0.0066 (9) |
| C8 | 0.0518 (13) | 0.0391 (12) | 0.0487 (13) | −0.0036 (10) | 0.0304 (12) | −0.0098 (10) |
| C9 | 0.0662 (17) | 0.0392 (13) | 0.0772 (18) | −0.0109 (12) | 0.0421 (15) | −0.0112 (13) |
| C10 | 0.0657 (16) | 0.0575 (16) | 0.0641 (16) | −0.0226 (13) | 0.0404 (14) | −0.0202 (13) |
| C11 | 0.0496 (14) | 0.0642 (16) | 0.0529 (14) | −0.0100 (12) | 0.0310 (12) | −0.0077 (12) |
| O1 | 0.0807 (12) | 0.0462 (10) | 0.0502 (10) | 0.0166 (9) | 0.0361 (10) | 0.0115 (8) |
| O2 | 0.1258 (19) | 0.0759 (14) | 0.0539 (12) | −0.0102 (13) | 0.0543 (13) | −0.0108 (10) |
| O3 | 0.0808 (13) | 0.0431 (10) | 0.0649 (12) | 0.0163 (9) | 0.0373 (10) | 0.0099 (8) |
| N1 | 0.0563 (12) | 0.0456 (12) | 0.0463 (11) | 0.0003 (9) | 0.0313 (10) | 0.0037 (9) |
| O4 | 0.0766 (12) | 0.0444 (9) | 0.0399 (9) | 0.0054 (8) | 0.0357 (9) | 0.0043 (7) |
| O5 | 0.0596 (10) | 0.0485 (9) | 0.0389 (9) | −0.0026 (8) | 0.0261 (8) | 0.0033 (7) |
| O6 | 0.0716 (12) | 0.0441 (10) | 0.0778 (13) | −0.0113 (9) | 0.0367 (11) | 0.0063 (9) |
| N2 | 0.0514 (11) | 0.0372 (10) | 0.0485 (11) | 0.0065 (9) | 0.0318 (10) | 0.0053 (9) |
| N3—C7 | 1.331 (3) | C5—H5 | 0.9300 |
| N3—C6 | 1.386 (3) | C7—C8 | 1.499 (3) |
| N3—H3A | 0.8600 | C8—C9 | 1.511 (3) |
| N4—C7 | 1.316 (3) | C8—H8 | 0.9800 |
| N4—C1 | 1.393 (3) | C9—C10 | 1.523 (4) |
| N4—H4A | 0.8600 | C9—H9A | 0.9700 |
| N5—C8 | 1.499 (3) | C9—H9B | 0.9700 |
| N5—C11 | 1.516 (3) | C10—C11 | 1.514 (4) |
| N5—H5A | 0.9000 | C10—H10A | 0.9700 |
| N5—H5B | 0.9000 | C10—H10B | 0.9700 |
| C1—C2 | 1.382 (4) | C11—H11A | 0.9700 |
| C1—C6 | 1.388 (3) | C11—H11B | 0.9700 |
| C2—C3 | 1.375 (4) | O1—N1 | 1.274 (2) |
| C2—H2 | 0.9300 | O2—N1 | 1.227 (2) |
| C3—C4 | 1.384 (4) | O3—N1 | 1.226 (2) |
| C3—H3 | 0.9300 | O4—N2 | 1.270 (2) |
| C4—C5 | 1.369 (4) | O5—N2 | 1.249 (2) |
| C4—H4 | 0.9300 | O6—N2 | 1.231 (2) |
| C5—C6 | 1.396 (3) | ||
| C7—N3—C6 | 108.93 (18) | N3—C7—C8 | 127.21 (19) |
| C7—N3—H3A | 125.5 | N5—C8—C7 | 112.84 (17) |
| C6—N3—H3A | 125.5 | N5—C8—C9 | 104.12 (19) |
| C7—N4—C1 | 109.12 (19) | C7—C8—C9 | 115.8 (2) |
| C7—N4—H4A | 125.4 | N5—C8—H8 | 107.9 |
| C1—N4—H4A | 125.4 | C7—C8—H8 | 107.9 |
| C8—N5—C11 | 107.51 (17) | C9—C8—H8 | 107.9 |
| C8—N5—H5A | 110.2 | C8—C9—C10 | 102.4 (2) |
| C11—N5—H5A | 110.2 | C8—C9—H9A | 111.3 |
| C8—N5—H5B | 110.2 | C10—C9—H9A | 111.3 |
| C11—N5—H5B | 110.2 | C8—C9—H9B | 111.3 |
| H5A—N5—H5B | 108.5 | C10—C9—H9B | 111.3 |
| C2—C1—C6 | 121.6 (2) | H9A—C9—H9B | 109.2 |
| C2—C1—N4 | 132.3 (2) | C11—C10—C9 | 104.05 (19) |
| C6—C1—N4 | 106.1 (2) | C11—C10—H10A | 110.9 |
| C3—C2—C1 | 116.8 (3) | C9—C10—H10A | 110.9 |
| C3—C2—H2 | 121.6 | C11—C10—H10B | 110.9 |
| C1—C2—H2 | 121.6 | C9—C10—H10B | 110.9 |
| C2—C3—C4 | 121.5 (3) | H10A—C10—H10B | 109.0 |
| C2—C3—H3 | 119.2 | C10—C11—N5 | 105.2 (2) |
| C4—C3—H3 | 119.2 | C10—C11—H11A | 110.7 |
| C5—C4—C3 | 122.7 (3) | N5—C11—H11A | 110.7 |
| C5—C4—H4 | 118.7 | C10—C11—H11B | 110.7 |
| C3—C4—H4 | 118.7 | N5—C11—H11B | 110.7 |
| C4—C5—C6 | 116.0 (3) | H11A—C11—H11B | 108.8 |
| C4—C5—H5 | 122.0 | O3—N1—O2 | 122.4 (2) |
| C6—C5—H5 | 122.0 | O3—N1—O1 | 119.45 (19) |
| N3—C6—C1 | 106.27 (19) | O2—N1—O1 | 118.1 (2) |
| N3—C6—C5 | 132.2 (2) | O6—N2—O5 | 120.74 (19) |
| C1—C6—C5 | 121.5 (2) | O6—N2—O4 | 120.96 (19) |
| N4—C7—N3 | 109.58 (19) | O5—N2—O4 | 118.29 (18) |
| N4—C7—C8 | 123.10 (19) | ||
| C7—N4—C1—C2 | −180.0 (3) | C1—N4—C7—N3 | −0.9 (3) |
| C7—N4—C1—C6 | 0.2 (3) | C1—N4—C7—C8 | −177.2 (2) |
| C6—C1—C2—C3 | −0.4 (4) | C6—N3—C7—N4 | 1.2 (3) |
| N4—C1—C2—C3 | 179.8 (3) | C6—N3—C7—C8 | 177.4 (2) |
| C1—C2—C3—C4 | 1.0 (4) | C11—N5—C8—C7 | 149.12 (19) |
| C2—C3—C4—C5 | −0.9 (5) | C11—N5—C8—C9 | 22.8 (2) |
| C3—C4—C5—C6 | 0.1 (4) | N4—C7—C8—N5 | −157.4 (2) |
| C7—N3—C6—C1 | −1.0 (2) | N3—C7—C8—N5 | 26.9 (3) |
| C7—N3—C6—C5 | −180.0 (2) | N4—C7—C8—C9 | −37.6 (3) |
| C2—C1—C6—N3 | −179.4 (2) | N3—C7—C8—C9 | 146.7 (2) |
| N4—C1—C6—N3 | 0.5 (2) | N5—C8—C9—C10 | −38.4 (2) |
| C2—C1—C6—C5 | −0.3 (4) | C7—C8—C9—C10 | −162.8 (2) |
| N4—C1—C6—C5 | 179.6 (2) | C8—C9—C10—C11 | 39.8 (3) |
| C4—C5—C6—N3 | 179.2 (2) | C9—C10—C11—N5 | −25.8 (3) |
| C4—C5—C6—C1 | 0.4 (4) | C8—N5—C11—C10 | 2.0 (2) |
| H··· | ||||
| N3—H3A···O4i | 0.86 | 1.93 | 2.788 (2) | 177 |
| N3—H3A···O5i | 0.86 | 2.50 | 3.020 (2) | 120 |
| N5—H5B···O1i | 0.90 | 1.89 | 2.771 (2) | 167 |
| N5—H5B···O3i | 0.90 | 2.64 | 3.149 (2) | 117 |
| N5—H5A···O5ii | 0.90 | 1.90 | 2.768 (2) | 162 |
| N4—H4A···O1 | 0.86 | 2.04 | 2.850 (2) | 157 |
| N4—H4A···O2 | 0.86 | 2.42 | 3.121 (3) | 139 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 1.93 | 2.788 (2) | 177 |
| N3—H3 | 0.86 | 2.50 | 3.020 (2) | 120 |
| N5—H5 | 0.90 | 1.89 | 2.771 (2) | 167 |
| N5—H5 | 0.90 | 2.64 | 3.149 (2) | 117 |
| N5—H5 | 0.90 | 1.90 | 2.768 (2) | 162 |
| N4—H4 | 0.86 | 2.04 | 2.850 (2) | 157 |
| N4—H4 | 0.86 | 2.42 | 3.121 (3) | 139 |
Symmetry codes: (i) ; (ii) .