Literature DB >> 21203010

Bis(nitrato-κO)[(S)-2-(pyrrolidin-2-yl)-1H-benzimidazole]cadmium(II).

Wei Dai1, Da-Wei Fu.   

Abstract

The title compound, [Cd(NO(3))(2)(C(11)n class="Species">H(13)N(3))(2)], was synthesized by hydro-thermal reaction of Cd(NO(3))(2) and S-2-(pyrrolidin-2-yl)-1H-1,3-benzimidazole. The Cd atom lies on an inversion centre. The distorted octa-hedral Cd environment contains two planar trans-related N,N-chelating S-2-(pyrrolidin-2-yl)-1H-1,3-benzimidazole ligands in one plane and two monodentate nitrate ligands. N-H⋯O hydrogen bonds involving a nitrate O atom build up an infinite chain parallel to the a axis.

Entities:  

Year:  2008        PMID: 21203010      PMCID: PMC2961940          DOI: 10.1107/S1600536808006454

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For physical properties such as fluorescence and dielectric behaviors of metal–organic coordination compounds, see: Aminabhavi et al. (1986 ▶); Ye et al. (2008 ▶).

Experimental

Crystal data

[Cd(NO3)2(C11n class="Species">H12N3)2] M = 610.91 Triclinic, a = 8.1487 (16) Å b = 9.1459 (18) Å c = 9.7439 (19) Å α = 111.67 (3)° β = 112.32 (3)° γ = 93.80 (3)° V = 606.0 (2) Å3 Z = 1 Mo Kα radiation μ = 0.96 mm−1 T = 293 (2) K 0.12 × 0.10 × 0.06 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.889, T max = 0.944 6172 measured reflections 2692 independent reflections 2258 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.114 S = 1.07 2692 reflections 169 parameters H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808006454/dn2315sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006454/dn2315Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(NO3)2(C11H12N3)2]Z = 1
Mr = 610.91F000 = 310
Triclinic, P1Dx = 1.674 Mg m3
Hall symbol: -P1Mo Kα radiation λ = 0.71073 Å
a = 8.1487 (16) ÅCell parameters from 2061 reflections
b = 9.1459 (18) Åθ = 3.3–27.5º
c = 9.7439 (19) ŵ = 0.96 mm1
α = 111.67 (3)ºT = 293 (2) K
β = 112.32 (3)ºPrism, colorless
γ = 93.80 (3)º0.12 × 0.10 × 0.06 mm
V = 606.0 (2) Å3
Rigaku Mercury2 diffractometer2692 independent reflections
Radiation source: fine-focus sealed tube2258 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.057
Detector resolution: 13.6612 pixels mm-1θmax = 27.3º
T = 293(2) Kθmin = 3.3º
CCD profile fitting scansh = −10→10
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −11→11
Tmin = 0.889, Tmax = 0.944l = −12→12
6172 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.114  w = 1/[σ2(Fo2) + (0.0464P)2 + 0.245P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2692 reflectionsΔρmax = 0.69 e Å3
169 parametersΔρmin = −0.44 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.00000.50000.00000.03774 (18)
O10.1413 (6)0.8668 (6)−0.0027 (6)0.0919 (14)
O20.2395 (5)0.7989 (5)−0.1864 (5)0.0701 (11)
O30.1342 (6)0.6144 (5)−0.1353 (5)0.0730 (11)
N40.1714 (5)0.7596 (6)−0.1065 (5)0.0503 (10)
N30.0853 (6)0.2624 (5)−0.1240 (5)0.0585 (11)
H3B0.00500.1820−0.13220.070*
N20.2902 (4)0.5267 (4)0.1908 (4)0.0376 (8)
N10.5347 (5)0.4236 (5)0.2503 (5)0.0470 (9)
H1A0.60400.35770.23840.056*
C30.5789 (7)0.8578 (6)0.6093 (6)0.0557 (13)
H3A0.58180.95640.68690.067*
C50.7348 (6)0.6476 (6)0.5341 (5)0.0453 (11)
H5A0.83650.60410.55760.054*
C60.5793 (6)0.5690 (5)0.3855 (5)0.0376 (9)
C40.7314 (7)0.7920 (6)0.6443 (6)0.0522 (12)
H4A0.83310.84760.74480.063*
C70.3627 (6)0.4036 (6)0.1402 (5)0.0444 (11)
C20.4236 (6)0.7797 (6)0.4619 (6)0.0487 (11)
H2A0.32210.82380.43980.058*
C80.2668 (7)0.2502 (6)−0.0174 (6)0.0524 (12)
H8A0.24720.16030.01080.063*
C100.2213 (6)0.1190 (6)−0.2943 (6)0.0543 (13)
H10A0.26350.1286−0.37190.065*
H10B0.18040.0053−0.32290.065*
C90.3685 (7)0.2075 (8)−0.1197 (6)0.0741 (18)
H9A0.44720.1382−0.09090.089*
H9B0.44240.3042−0.10550.089*
C110.0726 (9)0.2075 (9)−0.2880 (6)0.085 (2)
H11A0.08860.2992−0.31310.102*
H11B−0.04630.1356−0.36780.102*
C10.4241 (6)0.6332 (5)0.3478 (5)0.0360 (9)
U11U22U33U12U13U23
Cd10.0274 (3)0.0437 (3)0.0305 (3)0.00864 (18)0.00878 (18)0.00795 (19)
O10.084 (3)0.095 (3)0.080 (3)0.020 (3)0.050 (3)0.005 (3)
O20.073 (3)0.080 (3)0.092 (3)0.040 (2)0.048 (2)0.057 (2)
O30.074 (3)0.077 (3)0.092 (3)0.021 (2)0.050 (2)0.045 (2)
N40.032 (2)0.071 (3)0.046 (2)0.022 (2)0.0137 (18)0.024 (2)
N30.043 (2)0.060 (3)0.048 (2)0.012 (2)0.016 (2)0.003 (2)
N20.0310 (19)0.044 (2)0.0297 (17)0.0114 (15)0.0110 (15)0.0098 (15)
N10.039 (2)0.060 (3)0.044 (2)0.0233 (18)0.0198 (18)0.0208 (19)
C30.054 (3)0.051 (3)0.040 (3)0.009 (2)0.011 (2)0.008 (2)
C50.034 (2)0.060 (3)0.041 (2)0.015 (2)0.010 (2)0.027 (2)
C60.036 (2)0.044 (2)0.032 (2)0.0081 (18)0.0126 (19)0.0183 (19)
C40.044 (3)0.060 (3)0.034 (2)0.005 (2)0.004 (2)0.016 (2)
C70.043 (3)0.054 (3)0.035 (2)0.017 (2)0.017 (2)0.018 (2)
C20.039 (3)0.054 (3)0.044 (3)0.019 (2)0.014 (2)0.015 (2)
C80.050 (3)0.055 (3)0.044 (3)0.020 (2)0.017 (2)0.015 (2)
C100.046 (3)0.065 (3)0.036 (3)0.017 (2)0.016 (2)0.007 (2)
C90.044 (3)0.108 (5)0.038 (3)0.023 (3)0.013 (2)0.002 (3)
C110.081 (4)0.113 (5)0.034 (3)0.062 (4)0.016 (3)0.008 (3)
C10.031 (2)0.044 (2)0.033 (2)0.0113 (18)0.0107 (18)0.0181 (19)
Cd1—N2i2.314 (3)C3—H3A0.9300
Cd1—N22.314 (3)C5—C41.370 (7)
Cd1—N3i2.359 (4)C5—C61.391 (6)
Cd1—N32.359 (4)C5—H5A0.9300
Cd1—O32.448 (4)C6—C11.409 (6)
Cd1—O3i2.448 (4)C4—H4A0.9300
O1—N41.238 (5)C7—C81.513 (7)
O2—N41.245 (5)C2—C11.391 (6)
O3—N41.241 (5)C2—H2A0.9300
N3—C111.447 (7)C8—C91.488 (7)
N3—C81.490 (6)C8—H8A0.9800
N3—H3B0.9100C10—C111.509 (7)
N2—C71.327 (6)C10—C91.514 (7)
N2—C11.403 (5)C10—H10A0.9700
N1—C71.352 (6)C10—H10B0.9700
N1—C61.384 (6)C9—H9A0.9700
N1—H1A0.8600C9—H9B0.9700
C3—C21.385 (7)C11—H11A0.9700
C3—C41.397 (7)C11—H11B0.9700
N2i—Cd1—N2180.00 (18)N1—C6—C1105.2 (4)
N2i—Cd1—N3i75.24 (13)C5—C6—C1122.3 (4)
N2—Cd1—N3i104.76 (13)C5—C4—C3121.6 (4)
N2i—Cd1—N3104.76 (13)C5—C4—H4A119.2
N2—Cd1—N375.24 (13)C3—C4—H4A119.2
N3i—Cd1—N3180.0N2—C7—N1112.7 (4)
N2i—Cd1—O390.22 (13)N2—C7—C8125.9 (4)
N2—Cd1—O389.78 (13)N1—C7—C8121.4 (4)
N3i—Cd1—O394.44 (15)C3—C2—C1117.9 (4)
N3—Cd1—O385.56 (15)C3—C2—H2A121.1
N2i—Cd1—O3i89.78 (13)C1—C2—H2A121.1
N2—Cd1—O3i90.22 (13)N3—C8—C9106.3 (4)
N3i—Cd1—O3i85.56 (15)N3—C8—C7111.2 (4)
N3—Cd1—O3i94.44 (15)C9—C8—C7114.6 (5)
O3—Cd1—O3i180.0N3—C8—H8A108.2
N4—O3—Cd1126.5 (3)C9—C8—H8A108.2
O1—N4—O3122.5 (5)C7—C8—H8A108.2
O1—N4—O2118.7 (5)C11—C10—C9101.8 (4)
O3—N4—O2118.9 (4)C11—C10—H10A111.4
C11—N3—C8107.4 (4)C9—C10—H10A111.4
C11—N3—Cd1122.4 (4)C11—C10—H10B111.4
C8—N3—Cd1113.9 (3)C9—C10—H10B111.4
C11—N3—H3B103.7H10A—C10—H10B109.3
C8—N3—H3B103.7C8—C9—C10104.6 (4)
Cd1—N3—H3B103.7C8—C9—H9A110.8
C7—N2—C1105.2 (3)C10—C9—H9A110.8
C7—N2—Cd1113.3 (3)C8—C9—H9B110.8
C1—N2—Cd1141.5 (3)C10—C9—H9B110.8
C7—N1—C6107.9 (4)H9A—C9—H9B108.9
C7—N1—H1A126.1N3—C11—C10107.5 (4)
C6—N1—H1A126.1N3—C11—H11A110.2
C2—C3—C4121.5 (5)C10—C11—H11A110.2
C2—C3—H3A119.2N3—C11—H11B110.2
C4—C3—H3A119.2C10—C11—H11B110.2
C4—C5—C6117.0 (4)H11A—C11—H11B108.5
C4—C5—H5A121.5C2—C1—N2131.3 (4)
C6—C5—H5A121.5C2—C1—C6119.7 (4)
N1—C6—C5132.5 (4)N2—C1—C6109.0 (4)
N2i—Cd1—O3—N488.5 (4)C2—C3—C4—C50.3 (8)
N2—Cd1—O3—N4−91.5 (4)C1—N2—C7—N1−1.5 (5)
N3i—Cd1—O3—N413.3 (4)Cd1—N2—C7—N1177.7 (3)
N3—Cd1—O3—N4−166.7 (4)C1—N2—C7—C8175.2 (5)
O3i—Cd1—O3—N4−136 (100)Cd1—N2—C7—C8−5.6 (6)
Cd1—O3—N4—O1−0.9 (6)C6—N1—C7—N21.2 (5)
Cd1—O3—N4—O2−179.9 (3)C6—N1—C7—C8−175.7 (4)
N2i—Cd1—N3—C1151.1 (5)C4—C3—C2—C1−0.6 (8)
N2—Cd1—N3—C11−128.9 (5)C11—N3—C8—C97.3 (6)
N3i—Cd1—N3—C11137 (16)Cd1—N3—C8—C9−131.4 (4)
O3—Cd1—N3—C11−38.0 (5)C11—N3—C8—C7132.7 (5)
O3i—Cd1—N3—C11142.0 (5)Cd1—N3—C8—C7−6.0 (5)
N2i—Cd1—N3—C8−177.1 (3)N2—C7—C8—N38.1 (7)
N2—Cd1—N3—C82.9 (3)N1—C7—C8—N3−175.4 (4)
N3i—Cd1—N3—C8−91 (16)N2—C7—C8—C9128.7 (5)
O3—Cd1—N3—C893.8 (4)N1—C7—C8—C9−54.9 (7)
O3i—Cd1—N3—C8−86.2 (4)N3—C8—C9—C10−26.8 (6)
N2i—Cd1—N2—C761 (100)C7—C8—C9—C10−150.1 (5)
N3i—Cd1—N2—C7−178.9 (3)C11—C10—C9—C835.0 (7)
N3—Cd1—N2—C71.1 (3)C8—N3—C11—C1015.2 (7)
O3—Cd1—N2—C7−84.3 (3)Cd1—N3—C11—C10149.7 (4)
O3i—Cd1—N2—C795.7 (3)C9—C10—C11—N3−31.1 (7)
N2i—Cd1—N2—C1−120 (100)C3—C2—C1—N2179.7 (5)
N3i—Cd1—N2—C1−0.1 (5)C3—C2—C1—C60.5 (7)
N3—Cd1—N2—C1179.9 (5)C7—N2—C1—C2−178.0 (5)
O3—Cd1—N2—C194.5 (5)Cd1—N2—C1—C23.2 (8)
O3i—Cd1—N2—C1−85.5 (5)C7—N2—C1—C61.3 (5)
C7—N1—C6—C5178.6 (5)Cd1—N2—C1—C6−177.6 (3)
C7—N1—C6—C1−0.3 (5)N1—C6—C1—C2178.8 (4)
C4—C5—C6—N1−178.7 (5)C5—C6—C1—C2−0.3 (7)
C4—C5—C6—C10.0 (7)N1—C6—C1—N2−0.6 (5)
C6—C5—C4—C3−0.1 (7)C5—C6—C1—N2−179.6 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3B···O1i0.912.212.975 (7)141
N1—H1A···O2ii0.862.032.889 (5)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3B⋯O1i0.912.212.975 (7)141
N1—H1A⋯O2ii0.862.032.889 (5)174

Symmetry codes: (i) ; (ii) .

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