| Literature DB >> 21203010 |
Abstract
The title compound, [Cd(NO(3))(2)(C(11)H(13)N(3))(2)], was synthesized by hydro-thermal reaction of Cd(NO(3))(2) and S-2-(pyrrolidin-2-yl)-1H-1,3-benzimidazole. The Cd atom lies on an inversion centre. The distorted octa-hedral Cd environment contains two planar trans-related N,N-chelating S-2-(pyrrolidin-2-yl)-1H-1,3-benzimidazole ligands in one plane and two monodentate nitrate ligands. N-H⋯O hydrogen bonds involving a nitrate O atom build up an infinite chain parallel to the a axis.Entities:
Year: 2008 PMID: 21203010 PMCID: PMC2961940 DOI: 10.1107/S1600536808006454
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(NO3)2(C11H12N3)2] | |
| Triclinic, | |
| Hall symbol: -P1 | Mo |
| Cell parameters from 2061 reflections | |
| θ = 3.3–27.5º | |
| µ = 0.96 mm−1 | |
| α = 111.67 (3)º | |
| β = 112.32 (3)º | Prism, colorless |
| γ = 93.80 (3)º | 0.12 × 0.10 × 0.06 mm |
| Rigaku Mercury2 diffractometer | 2692 independent reflections |
| Radiation source: fine-focus sealed tube | 2258 reflections with |
| Monochromator: graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.3º |
| θmin = 3.3º | |
| CCD profile fitting scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 6172 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2692 reflections | Δρmax = 0.69 e Å−3 |
| 169 parameters | Δρmin = −0.44 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.0000 | 0.5000 | 0.0000 | 0.03774 (18) | |
| O1 | 0.1413 (6) | 0.8668 (6) | −0.0027 (6) | 0.0919 (14) | |
| O2 | 0.2395 (5) | 0.7989 (5) | −0.1864 (5) | 0.0701 (11) | |
| O3 | 0.1342 (6) | 0.6144 (5) | −0.1353 (5) | 0.0730 (11) | |
| N4 | 0.1714 (5) | 0.7596 (6) | −0.1065 (5) | 0.0503 (10) | |
| N3 | 0.0853 (6) | 0.2624 (5) | −0.1240 (5) | 0.0585 (11) | |
| H3B | 0.0050 | 0.1820 | −0.1322 | 0.070* | |
| N2 | 0.2902 (4) | 0.5267 (4) | 0.1908 (4) | 0.0376 (8) | |
| N1 | 0.5347 (5) | 0.4236 (5) | 0.2503 (5) | 0.0470 (9) | |
| H1A | 0.6040 | 0.3577 | 0.2384 | 0.056* | |
| C3 | 0.5789 (7) | 0.8578 (6) | 0.6093 (6) | 0.0557 (13) | |
| H3A | 0.5818 | 0.9564 | 0.6869 | 0.067* | |
| C5 | 0.7348 (6) | 0.6476 (6) | 0.5341 (5) | 0.0453 (11) | |
| H5A | 0.8365 | 0.6041 | 0.5576 | 0.054* | |
| C6 | 0.5793 (6) | 0.5690 (5) | 0.3855 (5) | 0.0376 (9) | |
| C4 | 0.7314 (7) | 0.7920 (6) | 0.6443 (6) | 0.0522 (12) | |
| H4A | 0.8331 | 0.8476 | 0.7448 | 0.063* | |
| C7 | 0.3627 (6) | 0.4036 (6) | 0.1402 (5) | 0.0444 (11) | |
| C2 | 0.4236 (6) | 0.7797 (6) | 0.4619 (6) | 0.0487 (11) | |
| H2A | 0.3221 | 0.8238 | 0.4398 | 0.058* | |
| C8 | 0.2668 (7) | 0.2502 (6) | −0.0174 (6) | 0.0524 (12) | |
| H8A | 0.2472 | 0.1603 | 0.0108 | 0.063* | |
| C10 | 0.2213 (6) | 0.1190 (6) | −0.2943 (6) | 0.0543 (13) | |
| H10A | 0.2635 | 0.1286 | −0.3719 | 0.065* | |
| H10B | 0.1804 | 0.0053 | −0.3229 | 0.065* | |
| C9 | 0.3685 (7) | 0.2075 (8) | −0.1197 (6) | 0.0741 (18) | |
| H9A | 0.4472 | 0.1382 | −0.0909 | 0.089* | |
| H9B | 0.4424 | 0.3042 | −0.1055 | 0.089* | |
| C11 | 0.0726 (9) | 0.2075 (9) | −0.2880 (6) | 0.085 (2) | |
| H11A | 0.0886 | 0.2992 | −0.3131 | 0.102* | |
| H11B | −0.0463 | 0.1356 | −0.3678 | 0.102* | |
| C1 | 0.4241 (6) | 0.6332 (5) | 0.3478 (5) | 0.0360 (9) |
| Cd1 | 0.0274 (3) | 0.0437 (3) | 0.0305 (3) | 0.00864 (18) | 0.00878 (18) | 0.00795 (19) |
| O1 | 0.084 (3) | 0.095 (3) | 0.080 (3) | 0.020 (3) | 0.050 (3) | 0.005 (3) |
| O2 | 0.073 (3) | 0.080 (3) | 0.092 (3) | 0.040 (2) | 0.048 (2) | 0.057 (2) |
| O3 | 0.074 (3) | 0.077 (3) | 0.092 (3) | 0.021 (2) | 0.050 (2) | 0.045 (2) |
| N4 | 0.032 (2) | 0.071 (3) | 0.046 (2) | 0.022 (2) | 0.0137 (18) | 0.024 (2) |
| N3 | 0.043 (2) | 0.060 (3) | 0.048 (2) | 0.012 (2) | 0.016 (2) | 0.003 (2) |
| N2 | 0.0310 (19) | 0.044 (2) | 0.0297 (17) | 0.0114 (15) | 0.0110 (15) | 0.0098 (15) |
| N1 | 0.039 (2) | 0.060 (3) | 0.044 (2) | 0.0233 (18) | 0.0198 (18) | 0.0208 (19) |
| C3 | 0.054 (3) | 0.051 (3) | 0.040 (3) | 0.009 (2) | 0.011 (2) | 0.008 (2) |
| C5 | 0.034 (2) | 0.060 (3) | 0.041 (2) | 0.015 (2) | 0.010 (2) | 0.027 (2) |
| C6 | 0.036 (2) | 0.044 (2) | 0.032 (2) | 0.0081 (18) | 0.0126 (19) | 0.0183 (19) |
| C4 | 0.044 (3) | 0.060 (3) | 0.034 (2) | 0.005 (2) | 0.004 (2) | 0.016 (2) |
| C7 | 0.043 (3) | 0.054 (3) | 0.035 (2) | 0.017 (2) | 0.017 (2) | 0.018 (2) |
| C2 | 0.039 (3) | 0.054 (3) | 0.044 (3) | 0.019 (2) | 0.014 (2) | 0.015 (2) |
| C8 | 0.050 (3) | 0.055 (3) | 0.044 (3) | 0.020 (2) | 0.017 (2) | 0.015 (2) |
| C10 | 0.046 (3) | 0.065 (3) | 0.036 (3) | 0.017 (2) | 0.016 (2) | 0.007 (2) |
| C9 | 0.044 (3) | 0.108 (5) | 0.038 (3) | 0.023 (3) | 0.013 (2) | 0.002 (3) |
| C11 | 0.081 (4) | 0.113 (5) | 0.034 (3) | 0.062 (4) | 0.016 (3) | 0.008 (3) |
| C1 | 0.031 (2) | 0.044 (2) | 0.033 (2) | 0.0113 (18) | 0.0107 (18) | 0.0181 (19) |
| Cd1—N2i | 2.314 (3) | C3—H3A | 0.9300 |
| Cd1—N2 | 2.314 (3) | C5—C4 | 1.370 (7) |
| Cd1—N3i | 2.359 (4) | C5—C6 | 1.391 (6) |
| Cd1—N3 | 2.359 (4) | C5—H5A | 0.9300 |
| Cd1—O3 | 2.448 (4) | C6—C1 | 1.409 (6) |
| Cd1—O3i | 2.448 (4) | C4—H4A | 0.9300 |
| O1—N4 | 1.238 (5) | C7—C8 | 1.513 (7) |
| O2—N4 | 1.245 (5) | C2—C1 | 1.391 (6) |
| O3—N4 | 1.241 (5) | C2—H2A | 0.9300 |
| N3—C11 | 1.447 (7) | C8—C9 | 1.488 (7) |
| N3—C8 | 1.490 (6) | C8—H8A | 0.9800 |
| N3—H3B | 0.9100 | C10—C11 | 1.509 (7) |
| N2—C7 | 1.327 (6) | C10—C9 | 1.514 (7) |
| N2—C1 | 1.403 (5) | C10—H10A | 0.9700 |
| N1—C7 | 1.352 (6) | C10—H10B | 0.9700 |
| N1—C6 | 1.384 (6) | C9—H9A | 0.9700 |
| N1—H1A | 0.8600 | C9—H9B | 0.9700 |
| C3—C2 | 1.385 (7) | C11—H11A | 0.9700 |
| C3—C4 | 1.397 (7) | C11—H11B | 0.9700 |
| N2i—Cd1—N2 | 180.00 (18) | N1—C6—C1 | 105.2 (4) |
| N2i—Cd1—N3i | 75.24 (13) | C5—C6—C1 | 122.3 (4) |
| N2—Cd1—N3i | 104.76 (13) | C5—C4—C3 | 121.6 (4) |
| N2i—Cd1—N3 | 104.76 (13) | C5—C4—H4A | 119.2 |
| N2—Cd1—N3 | 75.24 (13) | C3—C4—H4A | 119.2 |
| N3i—Cd1—N3 | 180.0 | N2—C7—N1 | 112.7 (4) |
| N2i—Cd1—O3 | 90.22 (13) | N2—C7—C8 | 125.9 (4) |
| N2—Cd1—O3 | 89.78 (13) | N1—C7—C8 | 121.4 (4) |
| N3i—Cd1—O3 | 94.44 (15) | C3—C2—C1 | 117.9 (4) |
| N3—Cd1—O3 | 85.56 (15) | C3—C2—H2A | 121.1 |
| N2i—Cd1—O3i | 89.78 (13) | C1—C2—H2A | 121.1 |
| N2—Cd1—O3i | 90.22 (13) | N3—C8—C9 | 106.3 (4) |
| N3i—Cd1—O3i | 85.56 (15) | N3—C8—C7 | 111.2 (4) |
| N3—Cd1—O3i | 94.44 (15) | C9—C8—C7 | 114.6 (5) |
| O3—Cd1—O3i | 180.0 | N3—C8—H8A | 108.2 |
| N4—O3—Cd1 | 126.5 (3) | C9—C8—H8A | 108.2 |
| O1—N4—O3 | 122.5 (5) | C7—C8—H8A | 108.2 |
| O1—N4—O2 | 118.7 (5) | C11—C10—C9 | 101.8 (4) |
| O3—N4—O2 | 118.9 (4) | C11—C10—H10A | 111.4 |
| C11—N3—C8 | 107.4 (4) | C9—C10—H10A | 111.4 |
| C11—N3—Cd1 | 122.4 (4) | C11—C10—H10B | 111.4 |
| C8—N3—Cd1 | 113.9 (3) | C9—C10—H10B | 111.4 |
| C11—N3—H3B | 103.7 | H10A—C10—H10B | 109.3 |
| C8—N3—H3B | 103.7 | C8—C9—C10 | 104.6 (4) |
| Cd1—N3—H3B | 103.7 | C8—C9—H9A | 110.8 |
| C7—N2—C1 | 105.2 (3) | C10—C9—H9A | 110.8 |
| C7—N2—Cd1 | 113.3 (3) | C8—C9—H9B | 110.8 |
| C1—N2—Cd1 | 141.5 (3) | C10—C9—H9B | 110.8 |
| C7—N1—C6 | 107.9 (4) | H9A—C9—H9B | 108.9 |
| C7—N1—H1A | 126.1 | N3—C11—C10 | 107.5 (4) |
| C6—N1—H1A | 126.1 | N3—C11—H11A | 110.2 |
| C2—C3—C4 | 121.5 (5) | C10—C11—H11A | 110.2 |
| C2—C3—H3A | 119.2 | N3—C11—H11B | 110.2 |
| C4—C3—H3A | 119.2 | C10—C11—H11B | 110.2 |
| C4—C5—C6 | 117.0 (4) | H11A—C11—H11B | 108.5 |
| C4—C5—H5A | 121.5 | C2—C1—N2 | 131.3 (4) |
| C6—C5—H5A | 121.5 | C2—C1—C6 | 119.7 (4) |
| N1—C6—C5 | 132.5 (4) | N2—C1—C6 | 109.0 (4) |
| N2i—Cd1—O3—N4 | 88.5 (4) | C2—C3—C4—C5 | 0.3 (8) |
| N2—Cd1—O3—N4 | −91.5 (4) | C1—N2—C7—N1 | −1.5 (5) |
| N3i—Cd1—O3—N4 | 13.3 (4) | Cd1—N2—C7—N1 | 177.7 (3) |
| N3—Cd1—O3—N4 | −166.7 (4) | C1—N2—C7—C8 | 175.2 (5) |
| O3i—Cd1—O3—N4 | −136 (100) | Cd1—N2—C7—C8 | −5.6 (6) |
| Cd1—O3—N4—O1 | −0.9 (6) | C6—N1—C7—N2 | 1.2 (5) |
| Cd1—O3—N4—O2 | −179.9 (3) | C6—N1—C7—C8 | −175.7 (4) |
| N2i—Cd1—N3—C11 | 51.1 (5) | C4—C3—C2—C1 | −0.6 (8) |
| N2—Cd1—N3—C11 | −128.9 (5) | C11—N3—C8—C9 | 7.3 (6) |
| N3i—Cd1—N3—C11 | 137 (16) | Cd1—N3—C8—C9 | −131.4 (4) |
| O3—Cd1—N3—C11 | −38.0 (5) | C11—N3—C8—C7 | 132.7 (5) |
| O3i—Cd1—N3—C11 | 142.0 (5) | Cd1—N3—C8—C7 | −6.0 (5) |
| N2i—Cd1—N3—C8 | −177.1 (3) | N2—C7—C8—N3 | 8.1 (7) |
| N2—Cd1—N3—C8 | 2.9 (3) | N1—C7—C8—N3 | −175.4 (4) |
| N3i—Cd1—N3—C8 | −91 (16) | N2—C7—C8—C9 | 128.7 (5) |
| O3—Cd1—N3—C8 | 93.8 (4) | N1—C7—C8—C9 | −54.9 (7) |
| O3i—Cd1—N3—C8 | −86.2 (4) | N3—C8—C9—C10 | −26.8 (6) |
| N2i—Cd1—N2—C7 | 61 (100) | C7—C8—C9—C10 | −150.1 (5) |
| N3i—Cd1—N2—C7 | −178.9 (3) | C11—C10—C9—C8 | 35.0 (7) |
| N3—Cd1—N2—C7 | 1.1 (3) | C8—N3—C11—C10 | 15.2 (7) |
| O3—Cd1—N2—C7 | −84.3 (3) | Cd1—N3—C11—C10 | 149.7 (4) |
| O3i—Cd1—N2—C7 | 95.7 (3) | C9—C10—C11—N3 | −31.1 (7) |
| N2i—Cd1—N2—C1 | −120 (100) | C3—C2—C1—N2 | 179.7 (5) |
| N3i—Cd1—N2—C1 | −0.1 (5) | C3—C2—C1—C6 | 0.5 (7) |
| N3—Cd1—N2—C1 | 179.9 (5) | C7—N2—C1—C2 | −178.0 (5) |
| O3—Cd1—N2—C1 | 94.5 (5) | Cd1—N2—C1—C2 | 3.2 (8) |
| O3i—Cd1—N2—C1 | −85.5 (5) | C7—N2—C1—C6 | 1.3 (5) |
| C7—N1—C6—C5 | 178.6 (5) | Cd1—N2—C1—C6 | −177.6 (3) |
| C7—N1—C6—C1 | −0.3 (5) | N1—C6—C1—C2 | 178.8 (4) |
| C4—C5—C6—N1 | −178.7 (5) | C5—C6—C1—C2 | −0.3 (7) |
| C4—C5—C6—C1 | 0.0 (7) | N1—C6—C1—N2 | −0.6 (5) |
| C6—C5—C4—C3 | −0.1 (7) | C5—C6—C1—N2 | −179.6 (4) |
| H··· | ||||
| N3—H3B···O1i | 0.91 | 2.21 | 2.975 (7) | 141 |
| N1—H1A···O2ii | 0.86 | 2.03 | 2.889 (5) | 174 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.91 | 2.21 | 2.975 (7) | 141 |
| N1—H1 | 0.86 | 2.03 | 2.889 (5) | 174 |
Symmetry codes: (i) ; (ii) .