Literature DB >> 21203009

Dibromido[(S)-2-(pyrrolidin-2-yl)-1H-benzimidazole]zinc(II).

Wei Dai1, Da-Wei Fu.   

Abstract

The title compound, [ZnBr(2)(C(11)H(13)N(3))], was synthesized by hydro-thermal reaction of ZnBr(2) and (S)-2-(pyrrolidin-2-yl)-1H-benzimidazole. The Zn(II) atom has a distorted tetra-hedral geometry and is coordinated by two N atoms from the chelating organic ligand and two terminal Br(-) anions. In the crystal structure, mol-ecules are linked into a chain along the [101] direction by N-H⋯Br and C-H⋯Br hydrogen bonds.

Entities:  

Year:  2008        PMID: 21203009      PMCID: PMC2961939          DOI: 10.1107/S1600536808019168

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For physical properties such as fluorescence and dielectric behaviors of metal-organic coordination compounds, see: Aminabhavi et al. (1986 ▶); Ye et al. (2008 ▶); Fu et al. (2007 ▶).

Experimental

Crystal data

[ZnBr2(C11H13N3)] M = 412.43 Monoclinic, a = 8.953 (3) Å b = 11.668 (2) Å c = 13.318 (2) Å β = 91.443 (3)° V = 1390.9 (6) Å3 Z = 4 Mo Kα radiation μ = 7.49 mm−1 T = 298 (2) K 0.30 × 0.25 × 0.15 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.459, T max = 0.982 (expected range = 0.152–0.325) 13896 measured reflections 3179 independent reflections 2426 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.114 S = 0.99 3179 reflections 154 parameters H-atom parameters constrained Δρmax = 0.67 e Å−3 Δρmin = −1.00 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808019168/ci2621sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808019168/ci2621Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnBr2(C11H13N3)]F000 = 800
Mr = 412.43Dx = 1.970 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3615 reflections
a = 8.953 (3) Åθ = 2.7–27.5º
b = 11.668 (2) ŵ = 7.49 mm1
c = 13.318 (2) ÅT = 298 (2) K
β = 91.443 (3)ºBlock, colourless
V = 1390.9 (6) Å30.30 × 0.25 × 0.15 mm
Z = 4
Rigaku Mercury2 diffractometer3179 independent reflections
Radiation source: fine-focus sealed tube2426 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.065
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 298(2) Kθmin = 2.7º
ω scansh = −11→11
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −15→15
Tmin = 0.459, Tmax = 0.982l = −17→17
13896 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.114  w = 1/[σ2(Fo2) + (0.0563P)2] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
3179 reflectionsΔρmax = 0.67 e Å3
154 parametersΔρmin = −1.00 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.25768 (6)0.93780 (4)0.57154 (4)0.04999 (18)
Zn10.13105 (6)0.76113 (4)0.55176 (4)0.03634 (16)
Br20.20151 (7)0.62945 (5)0.67586 (4)0.0600 (2)
C60.1068 (5)0.5895 (4)0.2708 (3)0.0378 (10)
N20.1146 (4)0.6901 (3)0.4143 (2)0.0344 (8)
N1−0.0955 (4)0.7895 (3)0.5261 (3)0.0378 (8)
H10B−0.11400.86500.53770.045*
N3−0.0296 (4)0.6401 (3)0.2863 (3)0.0391 (9)
H3C−0.10730.63570.24710.047*
C80.3041 (6)0.4841 (5)0.2047 (4)0.0554 (14)
H8A0.34270.43620.15590.066*
C5−0.0198 (5)0.6977 (4)0.3735 (3)0.0315 (9)
C110.1978 (5)0.6223 (4)0.3510 (3)0.0354 (9)
C70.1572 (6)0.5177 (4)0.1952 (3)0.0489 (12)
H7A0.09550.49410.14190.059*
C3−0.2915 (5)0.6980 (5)0.4237 (4)0.0550 (13)
H3A−0.36320.72840.37480.066*
H3B−0.27710.61700.41070.066*
C100.3458 (6)0.5868 (5)0.3582 (4)0.0508 (12)
H10A0.40740.60900.41200.061*
C90.3976 (6)0.5188 (5)0.2844 (4)0.0555 (14)
H9A0.49670.49490.28690.067*
C1−0.1969 (6)0.7209 (5)0.5893 (3)0.0512 (13)
H1A−0.21040.75730.65390.061*
H1B−0.15780.64420.60020.061*
C4−0.1416 (5)0.7637 (4)0.4201 (3)0.0361 (10)
H4A−0.15680.83570.38340.043*
C2−0.3426 (6)0.7174 (6)0.5290 (4)0.0631 (15)
H2A−0.40590.65530.55100.076*
H2B−0.39650.78920.53440.076*
U11U22U33U12U13U23
Br10.0629 (3)0.0386 (3)0.0474 (3)−0.0098 (2)−0.0209 (2)0.0027 (2)
Zn10.0395 (3)0.0392 (3)0.0299 (3)−0.0022 (2)−0.0093 (2)−0.0028 (2)
Br20.0757 (4)0.0521 (3)0.0509 (3)−0.0016 (3)−0.0220 (3)0.0139 (2)
C60.040 (2)0.042 (2)0.032 (2)−0.001 (2)−0.0023 (19)−0.0055 (18)
N20.0326 (18)0.041 (2)0.0290 (17)−0.0002 (16)−0.0077 (15)−0.0026 (15)
N10.041 (2)0.0366 (19)0.0357 (19)−0.0010 (17)−0.0034 (16)−0.0067 (16)
N30.035 (2)0.050 (2)0.0319 (18)−0.0031 (17)−0.0084 (16)−0.0051 (16)
C80.057 (3)0.063 (3)0.046 (3)0.018 (3)0.014 (3)−0.013 (3)
C50.034 (2)0.035 (2)0.0255 (19)−0.0055 (18)−0.0032 (17)0.0030 (17)
C110.031 (2)0.041 (2)0.033 (2)−0.0023 (19)−0.0051 (18)−0.0002 (18)
C70.058 (3)0.054 (3)0.035 (2)0.001 (3)−0.004 (2)−0.012 (2)
C30.035 (3)0.077 (4)0.053 (3)−0.008 (3)0.002 (2)−0.015 (3)
C100.039 (3)0.067 (3)0.046 (3)0.002 (3)−0.008 (2)−0.010 (2)
C90.041 (3)0.076 (4)0.050 (3)0.014 (3)0.004 (2)−0.006 (3)
C10.048 (3)0.068 (3)0.038 (3)−0.009 (3)0.004 (2)0.004 (2)
C40.033 (2)0.044 (3)0.031 (2)0.0022 (19)−0.0080 (18)0.0031 (18)
C20.046 (3)0.087 (4)0.057 (3)−0.002 (3)0.002 (3)0.004 (3)
Br1—Zn12.3642 (8)C5—C41.484 (6)
Zn1—N22.011 (3)C11—C101.390 (6)
Zn1—N12.075 (4)C7—H7A0.93
Zn1—Br22.3319 (7)C3—C21.504 (7)
C6—N31.377 (6)C3—C41.547 (6)
C6—C111.382 (6)C3—H3A0.97
C6—C71.393 (6)C3—H3B0.97
N2—C51.311 (5)C10—C91.354 (7)
N2—C111.387 (5)C10—H10A0.93
N1—C11.488 (6)C9—H9A0.93
N1—C41.492 (5)C1—C21.515 (7)
N1—H10B0.91C1—H1A0.97
N3—C51.343 (5)C1—H1B0.97
N3—H3C0.86C4—H4A0.98
C8—C71.376 (7)C2—H2A0.97
C8—C91.395 (7)C2—H2B0.97
C8—H8A0.93
N2—Zn1—N182.35 (14)C6—C7—H7A122.2
N2—Zn1—Br2112.70 (10)C2—C3—C4103.8 (4)
N1—Zn1—Br2117.89 (10)C2—C3—H3A111.0
N2—Zn1—Br1118.99 (11)C4—C3—H3A111.0
N1—Zn1—Br1110.08 (11)C2—C3—H3B111.0
Br2—Zn1—Br1112.03 (3)C4—C3—H3B111.0
N3—C6—C11105.8 (4)H3A—C3—H3B109.0
N3—C6—C7132.1 (4)C9—C10—C11118.0 (5)
C11—C6—C7122.0 (4)C9—C10—H10A121.0
C5—N2—C11106.7 (3)C11—C10—H10A121.0
C5—N2—Zn1113.3 (3)C10—C9—C8120.8 (5)
C11—N2—Zn1139.5 (3)C10—C9—H9A119.6
C1—N1—C4105.6 (3)C8—C9—H9A119.6
C1—N1—Zn1115.4 (3)N1—C1—C2104.1 (4)
C4—N1—Zn1111.7 (3)N1—C1—H1A110.9
C1—N1—H10B108.0C2—C1—H1A110.9
C4—N1—H10B108.0N1—C1—H1B110.9
Zn1—N1—H10B108.0C2—C1—H1B110.9
C5—N3—C6107.8 (3)H1A—C1—H1B109.0
C5—N3—H3C126.1C5—C4—N1108.1 (3)
C6—N3—H3C126.1C5—C4—C3113.8 (4)
C7—C8—C9122.8 (5)N1—C4—C3106.9 (3)
C7—C8—H8A118.6C5—C4—H4A109.3
C9—C8—H8A118.6N1—C4—H4A109.3
N2—C5—N3111.4 (4)C3—C4—H4A109.3
N2—C5—C4122.6 (4)C3—C2—C1102.7 (4)
N3—C5—C4126.0 (4)C3—C2—H2A111.2
C6—C11—N2108.2 (4)C1—C2—H2A111.2
C6—C11—C10120.8 (4)C3—C2—H2B111.2
N2—C11—C10130.9 (4)C1—C2—H2B111.2
C8—C7—C6115.6 (4)H2A—C2—H2B109.1
C8—C7—H7A122.2
N1—Zn1—N2—C52.2 (3)Zn1—N2—C11—C6170.4 (3)
Br2—Zn1—N2—C5119.3 (3)C5—N2—C11—C10−179.8 (5)
Br1—Zn1—N2—C5−106.5 (3)Zn1—N2—C11—C10−9.2 (8)
N1—Zn1—N2—C11−168.0 (5)C9—C8—C7—C60.1 (8)
Br2—Zn1—N2—C11−50.9 (5)N3—C6—C7—C8179.6 (5)
Br1—Zn1—N2—C1183.2 (5)C11—C6—C7—C8−1.4 (7)
N2—Zn1—N1—C1110.8 (3)C6—C11—C10—C9−0.2 (8)
Br2—Zn1—N1—C1−0.8 (3)N2—C11—C10—C9179.3 (5)
Br1—Zn1—N1—C1−131.0 (3)C11—C10—C9—C8−1.1 (8)
N2—Zn1—N1—C4−9.8 (3)C7—C8—C9—C101.2 (9)
Br2—Zn1—N1—C4−121.4 (3)C4—N1—C1—C2−32.6 (5)
Br1—Zn1—N1—C4108.4 (3)Zn1—N1—C1—C2−156.5 (3)
C11—C6—N3—C5−1.6 (5)N2—C5—C4—N1−14.3 (6)
C7—C6—N3—C5177.5 (5)N3—C5—C4—N1166.5 (4)
C11—N2—C5—N3−0.8 (5)N2—C5—C4—C3−132.8 (4)
Zn1—N2—C5—N3−174.2 (3)N3—C5—C4—C347.9 (6)
C11—N2—C5—C4179.8 (4)C1—N1—C4—C5−111.7 (4)
Zn1—N2—C5—C46.5 (5)Zn1—N1—C4—C514.4 (4)
C6—N3—C5—N21.5 (5)C1—N1—C4—C311.1 (5)
C6—N3—C5—C4−179.2 (4)Zn1—N1—C4—C3137.3 (3)
N3—C6—C11—N21.1 (5)C2—C3—C4—C5133.9 (4)
C7—C6—C11—N2−178.1 (4)C2—C3—C4—N114.6 (5)
N3—C6—C11—C10−179.2 (4)C4—C3—C2—C1−34.0 (6)
C7—C6—C11—C101.6 (7)N1—C1—C2—C341.8 (6)
C5—N2—C11—C6−0.2 (5)
D—H···AD—HH···AD···AD—H···A
N3—H3C···Br1i0.862.743.516 (4)150
C4—H4A···Br1ii0.982.863.637 (5)137
C1—H1A···Cg1iii0.972.783.673 (6)153
Br1—Zn12.3642 (8)
Zn1—N22.011 (3)
Zn1—N12.075 (4)
Zn1—Br22.3319 (7)
N2—Zn1—N182.35 (14)
N2—Zn1—Br2112.70 (10)
N1—Zn1—Br2117.89 (10)
N2—Zn1—Br1118.99 (11)
N1—Zn1—Br1110.08 (11)
Br2—Zn1—Br1112.03 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3C⋯Br1i0.862.743.516 (4)150
C4—H4A⋯Br1ii0.982.863.637 (5)137
C1—H1ACg1iii0.972.783.673 (6)153

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C6–C11 ring.

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