| Literature DB >> 21203009 |
Abstract
The title compound, [ZnBr(2)(C(11)H(13)N(3))], was synthesized by hydro-thermal reaction of ZnBr(2) and (S)-2-(pyrrolidin-2-yl)-1H-benzimidazole. The Zn(II) atom has a distorted tetra-hedral geometry and is coordinated by two N atoms from the chelating organic ligand and two terminal Br(-) anions. In the crystal structure, mol-ecules are linked into a chain along the [101] direction by N-H⋯Br and C-H⋯Br hydrogen bonds.Entities:
Year: 2008 PMID: 21203009 PMCID: PMC2961939 DOI: 10.1107/S1600536808019168
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [ZnBr2(C11H13N3)] | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3615 reflections |
| θ = 2.7–27.5º | |
| µ = 7.49 mm−1 | |
| β = 91.443 (3)º | Block, colourless |
| 0.30 × 0.25 × 0.15 mm | |
| Rigaku Mercury2 diffractometer | 3179 independent reflections |
| Radiation source: fine-focus sealed tube | 2426 reflections with |
| Monochromator: graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5º |
| θmin = 2.7º | |
| ω scans | |
| Absorption correction: multi-scan(CrystalClear; Rigaku, 2005) | |
| 13896 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.001 | |
| 3179 reflections | Δρmax = 0.67 e Å−3 |
| 154 parameters | Δρmin = −1.00 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Br1 | 0.25768 (6) | 0.93780 (4) | 0.57154 (4) | 0.04999 (18) | |
| Zn1 | 0.13105 (6) | 0.76113 (4) | 0.55176 (4) | 0.03634 (16) | |
| Br2 | 0.20151 (7) | 0.62945 (5) | 0.67586 (4) | 0.0600 (2) | |
| C6 | 0.1068 (5) | 0.5895 (4) | 0.2708 (3) | 0.0378 (10) | |
| N2 | 0.1146 (4) | 0.6901 (3) | 0.4143 (2) | 0.0344 (8) | |
| N1 | −0.0955 (4) | 0.7895 (3) | 0.5261 (3) | 0.0378 (8) | |
| H10B | −0.1140 | 0.8650 | 0.5377 | 0.045* | |
| N3 | −0.0296 (4) | 0.6401 (3) | 0.2863 (3) | 0.0391 (9) | |
| H3C | −0.1073 | 0.6357 | 0.2471 | 0.047* | |
| C8 | 0.3041 (6) | 0.4841 (5) | 0.2047 (4) | 0.0554 (14) | |
| H8A | 0.3427 | 0.4362 | 0.1559 | 0.066* | |
| C5 | −0.0198 (5) | 0.6977 (4) | 0.3735 (3) | 0.0315 (9) | |
| C11 | 0.1978 (5) | 0.6223 (4) | 0.3510 (3) | 0.0354 (9) | |
| C7 | 0.1572 (6) | 0.5177 (4) | 0.1952 (3) | 0.0489 (12) | |
| H7A | 0.0955 | 0.4941 | 0.1419 | 0.059* | |
| C3 | −0.2915 (5) | 0.6980 (5) | 0.4237 (4) | 0.0550 (13) | |
| H3A | −0.3632 | 0.7284 | 0.3748 | 0.066* | |
| H3B | −0.2771 | 0.6170 | 0.4107 | 0.066* | |
| C10 | 0.3458 (6) | 0.5868 (5) | 0.3582 (4) | 0.0508 (12) | |
| H10A | 0.4074 | 0.6090 | 0.4120 | 0.061* | |
| C9 | 0.3976 (6) | 0.5188 (5) | 0.2844 (4) | 0.0555 (14) | |
| H9A | 0.4967 | 0.4949 | 0.2869 | 0.067* | |
| C1 | −0.1969 (6) | 0.7209 (5) | 0.5893 (3) | 0.0512 (13) | |
| H1A | −0.2104 | 0.7573 | 0.6539 | 0.061* | |
| H1B | −0.1578 | 0.6442 | 0.6002 | 0.061* | |
| C4 | −0.1416 (5) | 0.7637 (4) | 0.4201 (3) | 0.0361 (10) | |
| H4A | −0.1568 | 0.8357 | 0.3834 | 0.043* | |
| C2 | −0.3426 (6) | 0.7174 (6) | 0.5290 (4) | 0.0631 (15) | |
| H2A | −0.4059 | 0.6553 | 0.5510 | 0.076* | |
| H2B | −0.3965 | 0.7892 | 0.5344 | 0.076* |
| Br1 | 0.0629 (3) | 0.0386 (3) | 0.0474 (3) | −0.0098 (2) | −0.0209 (2) | 0.0027 (2) |
| Zn1 | 0.0395 (3) | 0.0392 (3) | 0.0299 (3) | −0.0022 (2) | −0.0093 (2) | −0.0028 (2) |
| Br2 | 0.0757 (4) | 0.0521 (3) | 0.0509 (3) | −0.0016 (3) | −0.0220 (3) | 0.0139 (2) |
| C6 | 0.040 (2) | 0.042 (2) | 0.032 (2) | −0.001 (2) | −0.0023 (19) | −0.0055 (18) |
| N2 | 0.0326 (18) | 0.041 (2) | 0.0290 (17) | −0.0002 (16) | −0.0077 (15) | −0.0026 (15) |
| N1 | 0.041 (2) | 0.0366 (19) | 0.0357 (19) | −0.0010 (17) | −0.0034 (16) | −0.0067 (16) |
| N3 | 0.035 (2) | 0.050 (2) | 0.0319 (18) | −0.0031 (17) | −0.0084 (16) | −0.0051 (16) |
| C8 | 0.057 (3) | 0.063 (3) | 0.046 (3) | 0.018 (3) | 0.014 (3) | −0.013 (3) |
| C5 | 0.034 (2) | 0.035 (2) | 0.0255 (19) | −0.0055 (18) | −0.0032 (17) | 0.0030 (17) |
| C11 | 0.031 (2) | 0.041 (2) | 0.033 (2) | −0.0023 (19) | −0.0051 (18) | −0.0002 (18) |
| C7 | 0.058 (3) | 0.054 (3) | 0.035 (2) | 0.001 (3) | −0.004 (2) | −0.012 (2) |
| C3 | 0.035 (3) | 0.077 (4) | 0.053 (3) | −0.008 (3) | 0.002 (2) | −0.015 (3) |
| C10 | 0.039 (3) | 0.067 (3) | 0.046 (3) | 0.002 (3) | −0.008 (2) | −0.010 (2) |
| C9 | 0.041 (3) | 0.076 (4) | 0.050 (3) | 0.014 (3) | 0.004 (2) | −0.006 (3) |
| C1 | 0.048 (3) | 0.068 (3) | 0.038 (3) | −0.009 (3) | 0.004 (2) | 0.004 (2) |
| C4 | 0.033 (2) | 0.044 (3) | 0.031 (2) | 0.0022 (19) | −0.0080 (18) | 0.0031 (18) |
| C2 | 0.046 (3) | 0.087 (4) | 0.057 (3) | −0.002 (3) | 0.002 (3) | 0.004 (3) |
| Br1—Zn1 | 2.3642 (8) | C5—C4 | 1.484 (6) |
| Zn1—N2 | 2.011 (3) | C11—C10 | 1.390 (6) |
| Zn1—N1 | 2.075 (4) | C7—H7A | 0.93 |
| Zn1—Br2 | 2.3319 (7) | C3—C2 | 1.504 (7) |
| C6—N3 | 1.377 (6) | C3—C4 | 1.547 (6) |
| C6—C11 | 1.382 (6) | C3—H3A | 0.97 |
| C6—C7 | 1.393 (6) | C3—H3B | 0.97 |
| N2—C5 | 1.311 (5) | C10—C9 | 1.354 (7) |
| N2—C11 | 1.387 (5) | C10—H10A | 0.93 |
| N1—C1 | 1.488 (6) | C9—H9A | 0.93 |
| N1—C4 | 1.492 (5) | C1—C2 | 1.515 (7) |
| N1—H10B | 0.91 | C1—H1A | 0.97 |
| N3—C5 | 1.343 (5) | C1—H1B | 0.97 |
| N3—H3C | 0.86 | C4—H4A | 0.98 |
| C8—C7 | 1.376 (7) | C2—H2A | 0.97 |
| C8—C9 | 1.395 (7) | C2—H2B | 0.97 |
| C8—H8A | 0.93 | ||
| N2—Zn1—N1 | 82.35 (14) | C6—C7—H7A | 122.2 |
| N2—Zn1—Br2 | 112.70 (10) | C2—C3—C4 | 103.8 (4) |
| N1—Zn1—Br2 | 117.89 (10) | C2—C3—H3A | 111.0 |
| N2—Zn1—Br1 | 118.99 (11) | C4—C3—H3A | 111.0 |
| N1—Zn1—Br1 | 110.08 (11) | C2—C3—H3B | 111.0 |
| Br2—Zn1—Br1 | 112.03 (3) | C4—C3—H3B | 111.0 |
| N3—C6—C11 | 105.8 (4) | H3A—C3—H3B | 109.0 |
| N3—C6—C7 | 132.1 (4) | C9—C10—C11 | 118.0 (5) |
| C11—C6—C7 | 122.0 (4) | C9—C10—H10A | 121.0 |
| C5—N2—C11 | 106.7 (3) | C11—C10—H10A | 121.0 |
| C5—N2—Zn1 | 113.3 (3) | C10—C9—C8 | 120.8 (5) |
| C11—N2—Zn1 | 139.5 (3) | C10—C9—H9A | 119.6 |
| C1—N1—C4 | 105.6 (3) | C8—C9—H9A | 119.6 |
| C1—N1—Zn1 | 115.4 (3) | N1—C1—C2 | 104.1 (4) |
| C4—N1—Zn1 | 111.7 (3) | N1—C1—H1A | 110.9 |
| C1—N1—H10B | 108.0 | C2—C1—H1A | 110.9 |
| C4—N1—H10B | 108.0 | N1—C1—H1B | 110.9 |
| Zn1—N1—H10B | 108.0 | C2—C1—H1B | 110.9 |
| C5—N3—C6 | 107.8 (3) | H1A—C1—H1B | 109.0 |
| C5—N3—H3C | 126.1 | C5—C4—N1 | 108.1 (3) |
| C6—N3—H3C | 126.1 | C5—C4—C3 | 113.8 (4) |
| C7—C8—C9 | 122.8 (5) | N1—C4—C3 | 106.9 (3) |
| C7—C8—H8A | 118.6 | C5—C4—H4A | 109.3 |
| C9—C8—H8A | 118.6 | N1—C4—H4A | 109.3 |
| N2—C5—N3 | 111.4 (4) | C3—C4—H4A | 109.3 |
| N2—C5—C4 | 122.6 (4) | C3—C2—C1 | 102.7 (4) |
| N3—C5—C4 | 126.0 (4) | C3—C2—H2A | 111.2 |
| C6—C11—N2 | 108.2 (4) | C1—C2—H2A | 111.2 |
| C6—C11—C10 | 120.8 (4) | C3—C2—H2B | 111.2 |
| N2—C11—C10 | 130.9 (4) | C1—C2—H2B | 111.2 |
| C8—C7—C6 | 115.6 (4) | H2A—C2—H2B | 109.1 |
| C8—C7—H7A | 122.2 | ||
| N1—Zn1—N2—C5 | 2.2 (3) | Zn1—N2—C11—C6 | 170.4 (3) |
| Br2—Zn1—N2—C5 | 119.3 (3) | C5—N2—C11—C10 | −179.8 (5) |
| Br1—Zn1—N2—C5 | −106.5 (3) | Zn1—N2—C11—C10 | −9.2 (8) |
| N1—Zn1—N2—C11 | −168.0 (5) | C9—C8—C7—C6 | 0.1 (8) |
| Br2—Zn1—N2—C11 | −50.9 (5) | N3—C6—C7—C8 | 179.6 (5) |
| Br1—Zn1—N2—C11 | 83.2 (5) | C11—C6—C7—C8 | −1.4 (7) |
| N2—Zn1—N1—C1 | 110.8 (3) | C6—C11—C10—C9 | −0.2 (8) |
| Br2—Zn1—N1—C1 | −0.8 (3) | N2—C11—C10—C9 | 179.3 (5) |
| Br1—Zn1—N1—C1 | −131.0 (3) | C11—C10—C9—C8 | −1.1 (8) |
| N2—Zn1—N1—C4 | −9.8 (3) | C7—C8—C9—C10 | 1.2 (9) |
| Br2—Zn1—N1—C4 | −121.4 (3) | C4—N1—C1—C2 | −32.6 (5) |
| Br1—Zn1—N1—C4 | 108.4 (3) | Zn1—N1—C1—C2 | −156.5 (3) |
| C11—C6—N3—C5 | −1.6 (5) | N2—C5—C4—N1 | −14.3 (6) |
| C7—C6—N3—C5 | 177.5 (5) | N3—C5—C4—N1 | 166.5 (4) |
| C11—N2—C5—N3 | −0.8 (5) | N2—C5—C4—C3 | −132.8 (4) |
| Zn1—N2—C5—N3 | −174.2 (3) | N3—C5—C4—C3 | 47.9 (6) |
| C11—N2—C5—C4 | 179.8 (4) | C1—N1—C4—C5 | −111.7 (4) |
| Zn1—N2—C5—C4 | 6.5 (5) | Zn1—N1—C4—C5 | 14.4 (4) |
| C6—N3—C5—N2 | 1.5 (5) | C1—N1—C4—C3 | 11.1 (5) |
| C6—N3—C5—C4 | −179.2 (4) | Zn1—N1—C4—C3 | 137.3 (3) |
| N3—C6—C11—N2 | 1.1 (5) | C2—C3—C4—C5 | 133.9 (4) |
| C7—C6—C11—N2 | −178.1 (4) | C2—C3—C4—N1 | 14.6 (5) |
| N3—C6—C11—C10 | −179.2 (4) | C4—C3—C2—C1 | −34.0 (6) |
| C7—C6—C11—C10 | 1.6 (7) | N1—C1—C2—C3 | 41.8 (6) |
| C5—N2—C11—C6 | −0.2 (5) |
| H··· | ||||
| N3—H3C···Br1i | 0.86 | 2.74 | 3.516 (4) | 150 |
| C4—H4A···Br1ii | 0.98 | 2.86 | 3.637 (5) | 137 |
| C1—H1A···Cg1iii | 0.97 | 2.78 | 3.673 (6) | 153 |
| Br1—Zn1 | 2.3642 (8) |
| Zn1—N2 | 2.011 (3) |
| Zn1—N1 | 2.075 (4) |
| Zn1—Br2 | 2.3319 (7) |
| N2—Zn1—N1 | 82.35 (14) |
| N2—Zn1—Br2 | 112.70 (10) |
| N1—Zn1—Br2 | 117.89 (10) |
| N2—Zn1—Br1 | 118.99 (11) |
| N1—Zn1—Br1 | 110.08 (11) |
| Br2—Zn1—Br1 | 112.03 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.74 | 3.516 (4) | 150 |
| C4—H4 | 0.98 | 2.86 | 3.637 (5) | 137 |
| C1—H1 | 0.97 | 2.78 | 3.673 (6) | 153 |
Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C6–C11 ring.