Literature DB >> 21583105

2,2'-{1,1'-[Pentane-1,5-diylbis(oxy-nitrilo)]diethylidyne}di-1-naphthol.

Yin-Xia Sun1, Jian-Chao Wu, Wen-Kui Dong, Shang-Sheng Gong, Jun-Feng Tong.   

Abstract

The title compound, C(29)H(30)N(2)O(4), adopts a distorted Z configuration with respect to the oxime group, which is almost coplanar with the adjacent naphthalene ring [dihedral angle = 4.11 (2)°]. There is one half-mol-ecule in the asymmetric unit, with a crystallographic twofold rotation axis passing through the central C atom of the -CH=N-O-(CH)(5)-O-N=CH- bridge. Within the mol-ecule, the dihedral angle formed by the two naphthalene rings is 79.08 (3)°, and there are two intra-molecular O-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583105      PMCID: PMC2969628          DOI: 10.1107/S1600536809016584

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The condensation of primary amines with active carbonyl compounds can yield Schiff bases, see: Atwood & Harvey (2001 ▶); Casellato & Vigato (1977 ▶). For related structures, see: Dong et al. (2008a ▶,b ▶,c ▶, 2009 ▶); Shi et al. (2007 ▶); Yeap et al. (2008 ▶).

Experimental

Crystal data

C29H30N2O4 M = 470.55 Monoclinic, a = 14.0683 (12) Å b = 4.5659 (7) Å c = 19.048 (2) Å β = 97.321 (1)° V = 1213.6 (2) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.49 × 0.45 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.959, T max = 0.982 3170 measured reflections 1218 independent reflections 814 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.111 S = 1.02 1218 reflections 159 parameters 1 restraint H-atom parameters constrained Δρmax = 0.11 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809016584/at2776sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809016584/at2776Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H30N2O4F(000) = 500
Mr = 470.55Dx = 1.288 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 907 reflections
a = 14.0683 (12) Åθ = 2.9–22.5°
b = 4.5659 (7) ŵ = 0.09 mm1
c = 19.048 (2) ÅT = 298 K
β = 97.321 (1)°Block-like, yellow
V = 1213.6 (2) Å30.49 × 0.45 × 0.21 mm
Z = 2
Bruker SMART CCD area-detector diffractometer1218 independent reflections
Radiation source: fine-focus sealed tube814 reflections with I > 2σ(I)
graphiteRint = 0.034
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −16→9
Tmin = 0.959, Tmax = 0.982k = −5→5
3170 measured reflectionsl = −21→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.057P)2] where P = (Fo2 + 2Fc2)/3
1218 reflections(Δ/σ)max < 0.001
159 parametersΔρmax = 0.11 e Å3
1 restraintΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.2185 (2)−0.0996 (7)0.16024 (12)0.0654 (8)
O10.24369 (16)−0.2609 (7)0.10176 (10)0.0807 (7)
O20.09872 (13)0.1007 (6)0.23812 (10)0.0734 (7)
H20.11570.00560.20540.110*
C10.1626 (2)−0.4239 (10)0.07147 (17)0.0768 (10)
H1A0.1376−0.53430.10860.092*
H1B0.1829−0.56330.03790.092*
C20.0834 (2)−0.2382 (10)0.03427 (15)0.0700 (9)
H2A0.1085−0.1218−0.00180.084*
H2B0.0606−0.10490.06810.084*
C30.0000−0.4226 (13)0.00000.0661 (13)
H3A−0.0223−0.54780.03570.079*0.50
H3B0.0223−0.5478−0.03570.079*0.50
C40.3854 (2)0.0583 (12)0.16832 (16)0.0890 (13)
H4A0.3863−0.06680.12790.134*
H4B0.4321−0.00870.20610.134*
H4C0.40040.25520.15590.134*
C50.2876 (2)0.0510 (9)0.19192 (15)0.0621 (9)
C60.1752 (2)0.2479 (9)0.27207 (14)0.0543 (8)
C70.2658 (2)0.2281 (8)0.25198 (13)0.0527 (8)
C80.3400 (2)0.3899 (9)0.29307 (16)0.0673 (10)
H80.40220.37710.28160.081*
C90.3230 (2)0.5610 (10)0.34806 (16)0.0710 (10)
H90.37310.66600.37280.085*
C100.2308 (2)0.5826 (8)0.36834 (14)0.0575 (8)
C110.1552 (2)0.4251 (8)0.32992 (14)0.0533 (7)
C120.0631 (2)0.4448 (10)0.35059 (15)0.0704 (10)
H120.01280.34200.32550.084*
C130.0467 (3)0.6102 (10)0.40623 (17)0.0794 (11)
H13−0.01450.61700.41980.095*
C140.1205 (3)0.7717 (11)0.44378 (16)0.0804 (11)
H140.10830.88830.48170.097*
C150.2101 (3)0.7583 (10)0.42496 (17)0.0722 (10)
H150.25890.86760.45010.087*
U11U22U33U12U13U23
N10.0693 (18)0.071 (2)0.0551 (13)0.0114 (18)0.0037 (13)0.0008 (16)
O10.0745 (15)0.0976 (19)0.0678 (13)0.0151 (17)0.0001 (12)−0.0131 (16)
O20.0503 (12)0.0963 (19)0.0721 (13)−0.0068 (14)0.0014 (10)−0.0109 (14)
C10.090 (2)0.067 (2)0.0693 (19)0.015 (3)−0.0063 (19)−0.006 (2)
C20.080 (2)0.066 (2)0.0609 (17)0.006 (2)−0.0040 (16)−0.003 (2)
C30.081 (3)0.061 (3)0.057 (2)0.0000.012 (2)0.000
C40.066 (2)0.132 (4)0.071 (2)0.001 (3)0.0156 (17)−0.012 (3)
C50.0552 (19)0.077 (2)0.0519 (17)0.010 (2)−0.0001 (15)0.0130 (19)
C60.0465 (17)0.065 (2)0.0489 (15)0.0020 (19)−0.0041 (13)0.0072 (18)
C70.0489 (18)0.062 (2)0.0458 (15)0.0028 (18)−0.0001 (13)0.0135 (17)
C80.0472 (18)0.088 (3)0.0649 (19)−0.006 (2)0.0019 (15)0.007 (2)
C90.054 (2)0.090 (3)0.0660 (19)−0.014 (2)−0.0010 (16)0.000 (2)
C100.0544 (18)0.065 (2)0.0518 (16)0.0001 (19)0.0018 (15)0.0119 (19)
C110.0501 (17)0.060 (2)0.0490 (15)0.0016 (17)0.0035 (13)0.0130 (18)
C120.055 (2)0.095 (3)0.0608 (18)−0.001 (2)0.0049 (15)0.001 (2)
C130.067 (2)0.100 (3)0.073 (2)0.008 (2)0.0121 (19)0.002 (2)
C140.089 (3)0.090 (3)0.0620 (19)0.008 (3)0.011 (2)−0.003 (2)
C150.074 (2)0.077 (3)0.0620 (18)−0.009 (2)−0.0031 (17)0.004 (2)
N1—C51.278 (4)C5—C71.465 (5)
N1—O11.417 (3)C6—C71.380 (4)
O1—C11.422 (4)C6—C111.424 (4)
O2—C61.360 (3)C7—C81.428 (4)
O2—H20.8200C8—C91.352 (4)
C1—C21.503 (4)C8—H80.9300
C1—H1A0.9700C9—C101.402 (4)
C1—H1B0.9700C9—H90.9300
C2—C31.522 (5)C10—C151.404 (5)
C2—H2A0.9700C10—C111.410 (4)
C2—H2B0.9700C11—C121.404 (4)
C3—C2i1.522 (5)C12—C131.345 (5)
C3—H3A0.9700C12—H120.9300
C3—H3B0.9700C13—C141.395 (5)
C4—C51.501 (4)C13—H130.9300
C4—H4A0.9600C14—C151.355 (4)
C4—H4B0.9600C14—H140.9300
C4—H4C0.9600C15—H150.9300
C5—N1—O1113.5 (3)O2—C6—C7122.6 (3)
N1—O1—C1108.8 (2)O2—C6—C11115.3 (2)
C6—O2—H2109.5C7—C6—C11122.2 (3)
O1—C1—C2113.8 (3)C6—C7—C8116.8 (3)
O1—C1—H1A108.8C6—C7—C5123.1 (3)
C2—C1—H1A108.8C8—C7—C5120.1 (3)
O1—C1—H1B108.8C9—C8—C7122.3 (3)
C2—C1—H1B108.8C9—C8—H8118.9
H1A—C1—H1B107.7C7—C8—H8118.9
C1—C2—C3112.0 (3)C8—C9—C10121.0 (3)
C1—C2—H2A109.2C8—C9—H9119.5
C3—C2—H2A109.2C10—C9—H9119.5
C1—C2—H2B109.2C9—C10—C15122.8 (3)
C3—C2—H2B109.2C9—C10—C11119.0 (3)
H2A—C2—H2B107.9C15—C10—C11118.2 (3)
C2—C3—C2i112.9 (5)C12—C11—C10119.0 (3)
C2—C3—H3A109.0C12—C11—C6122.3 (3)
C2i—C3—H3A109.0C10—C11—C6118.8 (3)
C2—C3—H3B109.0C13—C12—C11121.0 (3)
C2i—C3—H3B109.0C13—C12—H12119.5
H3A—C3—H3B107.8C11—C12—H12119.5
C5—C4—H4A109.5C12—C13—C14120.6 (3)
C5—C4—H4B109.5C12—C13—H13119.7
H4A—C4—H4B109.5C14—C13—H13119.7
C5—C4—H4C109.5C15—C14—C13119.8 (4)
H4A—C4—H4C109.5C15—C14—H14120.1
H4B—C4—H4C109.5C13—C14—H14120.1
N1—C5—C7116.3 (3)C14—C15—C10121.4 (4)
N1—C5—C4122.8 (3)C14—C15—H15119.3
C7—C5—C4120.9 (3)C10—C15—H15119.3
C5—N1—O1—C1178.9 (3)C8—C9—C10—C15−179.8 (4)
N1—O1—C1—C269.9 (4)C8—C9—C10—C11−0.7 (5)
O1—C1—C2—C3177.5 (2)C9—C10—C11—C12179.5 (3)
C1—C2—C3—C2i176.6 (3)C15—C10—C11—C12−1.4 (5)
O1—N1—C5—C7178.7 (3)C9—C10—C11—C60.4 (4)
O1—N1—C5—C40.9 (5)C15—C10—C11—C6179.5 (3)
O2—C6—C7—C8−178.8 (3)O2—C6—C11—C120.3 (5)
C11—C6—C7—C81.3 (5)C7—C6—C11—C12−179.8 (3)
O2—C6—C7—C50.9 (5)O2—C6—C11—C10179.4 (3)
C11—C6—C7—C5−179.0 (3)C7—C6—C11—C10−0.7 (5)
N1—C5—C7—C6−3.4 (5)C10—C11—C12—C13−0.2 (5)
C4—C5—C7—C6174.5 (4)C6—C11—C12—C13178.9 (3)
N1—C5—C7—C8176.3 (3)C11—C12—C13—C141.5 (6)
C4—C5—C7—C8−5.8 (5)C12—C13—C14—C15−1.2 (6)
C6—C7—C8—C9−1.6 (5)C13—C14—C15—C10−0.4 (6)
C5—C7—C8—C9178.6 (3)C9—C10—C15—C14−179.2 (4)
C7—C8—C9—C101.4 (5)C11—C10—C15—C141.7 (6)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.832.552 (3)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.832.552 (3)145
  6 in total

1.  Group 13 compounds incorporating Salen ligands.

Authors:  D A Atwood; M J Harvey
Journal:  Chem Rev       Date:  2001-01       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  6,6'-Dihydr-oxy-2,2'-[(pentane-1,5-diyl-dioxy)bis-(nitrilo-methyl-idyne)]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Yong-Hong Guan; Li Xu; Zong-Li Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-26

4.  2,2'-{1,1'-[Pentane-1,5-diyl-bis(oxy-nitrilo)]-diethyl-idyne}diphenol.

Authors:  Wen-Kui Dong; Zhong-Wu Lv; Xue-Ni He; Yong-Hong Guan; Jun-Feng Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-04

5.  6,6'-Dihydr-oxy-2,2'-[(butane-1,4-diyldi-oxy)bis-(nitrilo-methyl-idyne)]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Yin-Xia Sun; Li Xu; Yong-Hong Guan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13

6.  4,4',5,5'-Tetra-methyl-2,2'-[1,1'-(propane-1,3-diyldinitrilo)diethyl-idyne]diphenol.

Authors:  Chin Sing Yeap; Reza Kia; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30
  6 in total
  1 in total

1.  2,2'-Dichloro-1,1'-[(pentane-1,5-diyldi-oxy)bis-(nitrilo-methyl-idyne)]dibenzene.

Authors:  Wen-Kui Dong; Jun-Feng Tong; Jian-Chao Wu; Li Li; Jian Yao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18
  1 in total

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