Literature DB >> 21580925

2,2'-{1,1'-[Pentane-1,5-diyl-bis(oxy-nitrilo)]-diethyl-idyne}diphenol.

Wen-Kui Dong1, Zhong-Wu Lv, Xue-Ni He, Yong-Hong Guan, Jun-Feng Tong.   

Abstract

In the title compound, C(21)H(26)N(2)O(4), there is half a mol-ecule in the asymmetric unit with a crystallographic twofold rotation axis passing through the central C atom of the -CH=N-O-(CH(2))(5)-O-N=CH- bridge. The dihedral angle formed by the two benzene rings is 80.85 (2)°. Strong intra-molecular O-H⋯N and C-H⋯O hydrogen bonds help to establish the molecular conformation. There are also weak inter-molecular π-π stacking inter-actions between neighbouring benzene rings [centroid-centroid separation = 3.502 (3) Å].

Entities:  

Year:  2008        PMID: 21580925      PMCID: PMC2959680          DOI: 10.1107/S160053680803136X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Bhadbhade & Srinivas (1993 ▶). For related structures, see: Dong et al. (2007 ▶, 2008 ▶); Wang et al. (2007 ▶); Xu et al. (2007 ▶).

Experimental

Crystal data

C21H26N2O4 M = 370.44 Monoclinic, a = 12.9691 (13) Å b = 4.601 (1) Å c = 16.3639 (16) Å β = 91.621 (1)° V = 976.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.48 × 0.40 × 0.32 mm

Data collection

Siemens SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.959, T max = 0.973 2421 measured reflections 972 independent reflections 646 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.123 S = 1.04 972 reflections 123 parameters 2 restraints H-atom parameters constrained Δρmax = 0.15 e Å−3 Δρmin = −0.12 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680803136X/gw2048sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680803136X/gw2048Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H26N2O4F(000) = 396
Mr = 370.44Dx = 1.260 Mg m3
Monoclinic, C2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: C 2yCell parameters from 813 reflections
a = 12.9691 (13) Åθ = 2.5–23.2°
b = 4.601 (1) ŵ = 0.09 mm1
c = 16.3639 (16) ÅT = 298 K
β = 91.621 (1)°Needle-like, colourless
V = 976.1 (3) Å30.48 × 0.40 × 0.32 mm
Z = 2
Siemens SMART 1000 CCD area-detector diffractometer972 independent reflections
Radiation source: fine-focus sealed tube646 reflections with I > 2σ(I)
graphiteRint = 0.038
φ and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→15
Tmin = 0.959, Tmax = 0.973k = −5→5
2421 measured reflectionsl = −19→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0568P)2 + 0.2844P] where P = (Fo2 + 2Fc2)/3
972 reflections(Δ/σ)max < 0.001
123 parametersΔρmax = 0.15 e Å3
2 restraintsΔρmin = −0.12 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.1857 (2)0.7552 (7)0.30501 (17)0.0533 (8)
O10.23002 (19)0.6005 (8)0.37063 (14)0.0656 (7)
O20.0337 (2)0.9262 (9)0.21462 (17)0.0796 (9)
H20.06290.82230.24880.119*
C10.1512 (3)0.4342 (11)0.4082 (2)0.0607 (10)
H1A0.18340.29270.44470.073*
H1B0.11260.32860.36620.073*
C20.0778 (3)0.6170 (10)0.4558 (2)0.0551 (9)
H2A0.11690.73330.49520.066*
H2B0.04180.74890.41860.066*
C30.00000.4391 (13)0.50000.0526 (12)
H3A0.03610.31470.53920.063*0.50
H3B−0.03610.31470.46080.063*0.50
C40.3610 (3)0.9300 (15)0.2926 (2)0.0836 (14)
H4A0.37360.80410.33860.125*
H4B0.37871.12590.30740.125*
H4C0.40230.86880.24790.125*
C50.2494 (3)0.9162 (9)0.2673 (2)0.0494 (9)
C60.2084 (3)1.0860 (9)0.1985 (2)0.0485 (9)
C70.1043 (3)1.0870 (11)0.1759 (2)0.0573 (9)
C80.0682 (3)1.2544 (12)0.1116 (2)0.0745 (12)
H8−0.00171.25350.09710.089*
C90.1348 (4)1.4212 (13)0.0693 (2)0.0773 (13)
H90.10991.53430.02600.093*
C100.2363 (4)1.4250 (12)0.0892 (2)0.0735 (12)
H100.28121.53890.05950.088*
C110.2732 (3)1.2605 (10)0.1533 (2)0.0610 (11)
H110.34331.26560.16700.073*
U11U22U33U12U13U23
N10.0547 (18)0.0514 (18)0.0545 (16)0.0036 (18)0.0125 (14)−0.0018 (17)
O10.0574 (15)0.0702 (16)0.0701 (15)0.0067 (17)0.0167 (12)0.0136 (17)
O20.0532 (16)0.0868 (19)0.099 (2)−0.006 (2)0.0049 (14)0.018 (2)
C10.065 (2)0.053 (2)0.066 (2)0.011 (3)0.0173 (19)0.009 (2)
C20.062 (2)0.045 (2)0.059 (2)−0.001 (2)0.0143 (17)−0.002 (2)
C30.062 (3)0.041 (3)0.054 (3)0.0000.009 (2)0.000
C40.055 (2)0.107 (4)0.089 (3)−0.014 (3)0.004 (2)0.015 (4)
C50.0469 (19)0.048 (2)0.0541 (19)−0.003 (2)0.0155 (17)−0.010 (2)
C60.053 (2)0.0447 (19)0.0478 (18)−0.011 (2)0.0105 (16)−0.010 (2)
C70.056 (2)0.055 (2)0.062 (2)−0.004 (3)0.0132 (18)−0.005 (3)
C80.071 (3)0.078 (3)0.074 (3)−0.001 (3)−0.004 (2)0.005 (3)
C90.106 (4)0.067 (3)0.058 (2)0.001 (3)0.000 (2)0.001 (3)
C100.098 (4)0.066 (3)0.058 (2)−0.023 (3)0.014 (2)−0.004 (3)
C110.063 (2)0.062 (3)0.059 (2)−0.014 (3)0.013 (2)−0.012 (3)
N1—C51.282 (4)C4—H4A0.9600
N1—O11.398 (4)C4—H4B0.9600
O1—C11.430 (5)C4—H4C0.9600
O2—C71.349 (5)C5—C61.459 (5)
O2—H20.8200C6—C71.389 (5)
C1—C21.504 (5)C6—C111.390 (5)
C1—H1A0.9700C7—C81.375 (5)
C1—H1B0.9700C8—C91.360 (6)
C2—C31.501 (5)C8—H80.9300
C2—H2A0.9700C9—C101.348 (6)
C2—H2B0.9700C9—H90.9300
C3—C2i1.501 (5)C10—C111.370 (6)
C3—H3A0.9700C10—H100.9300
C3—H3B0.9700C11—H110.9300
C4—C51.495 (5)
C5—N1—O1114.0 (3)C5—C4—H4C109.5
N1—O1—C1108.6 (3)H4A—C4—H4C109.5
C7—O2—H2109.5H4B—C4—H4C109.5
O1—C1—C2113.2 (4)N1—C5—C6117.0 (3)
O1—C1—H1A108.9N1—C5—C4121.6 (4)
C2—C1—H1A108.9C6—C5—C4121.3 (4)
O1—C1—H1B108.9C7—C6—C11117.0 (4)
C2—C1—H1B108.9C7—C6—C5122.5 (3)
H1A—C1—H1B107.7C11—C6—C5120.4 (3)
C3—C2—C1112.9 (3)O2—C7—C8116.4 (4)
C3—C2—H2A109.0O2—C7—C6122.7 (4)
C1—C2—H2A109.0C8—C7—C6120.8 (4)
C3—C2—H2B109.0C9—C8—C7119.9 (4)
C1—C2—H2B109.0C9—C8—H8120.1
H2A—C2—H2B107.8C7—C8—H8120.1
C2—C3—C2i113.9 (5)C10—C9—C8121.0 (5)
C2—C3—H3A108.8C10—C9—H9119.5
C2i—C3—H3A108.8C8—C9—H9119.5
C2—C3—H3B108.8C9—C10—C11119.7 (4)
C2i—C3—H3B108.8C9—C10—H10120.2
H3A—C3—H3B107.7C11—C10—H10120.2
C5—C4—H4A109.5C10—C11—C6121.6 (4)
C5—C4—H4B109.5C10—C11—H11119.2
H4A—C4—H4B109.5C6—C11—H11119.2
C5—N1—O1—C1179.0 (3)C5—C6—C7—O2−1.6 (6)
N1—O1—C1—C2−72.2 (4)C11—C6—C7—C80.0 (6)
O1—C1—C2—C3−175.9 (3)C5—C6—C7—C8178.7 (4)
C1—C2—C3—C2i−176.9 (4)O2—C7—C8—C9−179.6 (4)
O1—N1—C5—C6−179.5 (3)C6—C7—C8—C90.1 (6)
O1—N1—C5—C40.5 (5)C7—C8—C9—C100.2 (7)
N1—C5—C6—C72.9 (5)C8—C9—C10—C11−0.5 (8)
C4—C5—C6—C7−177.1 (4)C9—C10—C11—C60.6 (7)
N1—C5—C6—C11−178.5 (3)C7—C6—C11—C10−0.3 (6)
C4—C5—C6—C111.5 (6)C5—C6—C11—C10−179.1 (4)
C11—C6—C7—O2179.7 (4)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.842.553 (4)144
C4—H4A···O10.962.162.631 (5)109
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.842.553 (4)144
C4—H4A⋯O10.962.162.631 (5)109
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2,2'-[1,1'-(Propane-1,3-diyldioxy-dinitrilo)diethyl-idyne]diphenol.

Authors:  Wen-Kui Dong; Xue-Ni He; Jin-Kui Zhong; Xiao Chen; Tian-Zhi Yu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  2 in total
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1.  2,2'-{1,1'-[Pentane-1,5-diylbis(oxy-nitrilo)]diethylidyne}di-1-naphthol.

Authors:  Yin-Xia Sun; Jian-Chao Wu; Wen-Kui Dong; Shang-Sheng Gong; Jun-Feng Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-14

2.  5,5'-Dimeth-oxy-2,2'-[(pentane-1,5-diyl-dioxy)bis-(nitrilo-methyl-idyne)]diphenol.

Authors:  Yin-Xia Sun; Li Li; Wen-Kui Dong; Jian-Chao Wu; Jun-Feng Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30
  2 in total

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