Literature DB >> 21203294

6,6'-Dihydr-oxy-2,2'-[(pentane-1,5-diyl-dioxy)bis-(nitrilo-methyl-idyne)]diphenol.

Wen-Kui Dong1, Xue-Ni He, Yong-Hong Guan, Li Xu, Zong-Li Ren.   

Abstract

The mol-ecule of the title compound, C(19)H(22)N(2)O(6), assumes a W-shaped configuration with the dihedral angle between the two halves of the mol-ecule being 82.48 (5)°. There is one half-mol-ecule in the asymmetric unit with a crystallographic twofold rotation axis passing through the central C atom of the five methylene groups in the [-CH=N-O-(CH(2))(5)-O-N=CH-] bridge. The dihedral angle formed by the two n class="Chemical">benzene rings in each mol-ecule of the title compound is 84.18 (4)°. There are strong intra-molecular O-H⋯N and O-H⋯O hydrogen bonds and weak inter-molecular π-π stacking inter-actions between neighbouring benzene rings, and the inter-molecular plane-to-plane distances are 3.488 (2) and 3.841 (3) Å along the b and c axes, respectively. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link each mol-ecule to two others, forming an infinite three-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21203294      PMCID: PMC2962213          DOI: 10.1107/S1600536808023064

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Akine et al. (2001 ▶, 2005 ▶, 2006 ▶); Atwood (1997 ▶); Dong & Feng (2006 ▶); Dong, Zhao et al. (2008 ▶); Dong, He et al. (2008 ▶); Duan et al. (2007 ▶); Venkataramanan et al. (2005 ▶); Yu et al. (2008 ▶).

Experimental

Crystal data

C19H22N2O6 M = 374.39 Monoclinic, a = 28.439 (3) Å b = 4.6997 (6) Å c = 14.0843 (17) Å β = 100.354 (2)° V = 1851.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 (2) K 0.46 × 0.27 × 0.25 mm

Data collection

Siemens SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.955, T max = 0.975 4246 measured reflections 1621 independent reflections 837 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.135 S = 1.00 1621 reflections 123 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SMART; data reduction: SAINT (Siemens, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808023064/hg2427sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808023064/hg2427Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H22N2O6F000 = 792
Mr = 374.39Dx = 1.343 Mg m3
Monoclinic, C2/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 875 reflections
a = 28.439 (3) Åθ = 2.9–22.4º
b = 4.6997 (6) ŵ = 0.10 mm1
c = 14.0843 (17) ÅT = 298 (2) K
β = 100.354 (2)ºNeedle-like, pale-brown
V = 1851.8 (4) Å30.46 × 0.27 × 0.25 mm
Z = 4
Siemens SMART 1000 CCD area-detector diffractometer1621 independent reflections
Radiation source: fine-focus sealed tube837 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.062
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.5º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −33→30
Tmin = 0.955, Tmax = 0.975k = −5→5
4246 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.135  w = 1/[σ2(Fo2) + (0.0407P)2 + 1.5785P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1621 reflectionsΔρmax = 0.24 e Å3
123 parametersΔρmin = −0.24 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.40208 (8)−0.0702 (5)0.51037 (15)0.0479 (7)
O10.41975 (7)−0.2344 (4)0.59236 (12)0.0542 (6)
O20.39611 (7)0.1384 (5)0.33535 (13)0.0637 (7)
H20.40760.03850.38150.095*
O30.34987 (8)0.4908 (5)0.19941 (14)0.0782 (8)
H30.37300.38700.19910.117*
C10.46067 (10)−0.3889 (7)0.57460 (19)0.0535 (9)
H1A0.4849−0.25760.56100.064*
H1B0.4518−0.51260.51920.064*
C20.47987 (11)−0.5624 (7)0.66243 (18)0.0543 (9)
H2A0.5048−0.68680.64780.065*
H2B0.4544−0.68140.67800.065*
C30.5000−0.3833 (9)0.75000.0500 (11)
H3A0.4749−0.26170.76570.060*0.50
H3B0.5251−0.26170.73430.060*0.50
C40.36573 (10)0.0763 (7)0.52087 (19)0.0470 (8)
H40.35400.06440.57830.056*
C50.34239 (9)0.2611 (6)0.44479 (18)0.0418 (7)
C60.35833 (10)0.2865 (6)0.35701 (19)0.0439 (7)
C70.33496 (11)0.4666 (7)0.28589 (19)0.0509 (8)
C80.29684 (11)0.6252 (7)0.3023 (2)0.0573 (9)
H80.28190.74980.25500.069*
C90.28046 (11)0.6018 (7)0.3883 (2)0.0590 (9)
H90.25420.70750.39850.071*
C100.30300 (10)0.4222 (7)0.4586 (2)0.0538 (9)
H100.29180.40750.51650.065*
U11U22U33U12U13U23
N10.0471 (15)0.0517 (18)0.0431 (13)0.0017 (13)0.0029 (11)0.0029 (12)
O10.0510 (13)0.0670 (16)0.0443 (11)0.0114 (12)0.0076 (9)0.0072 (10)
O20.0557 (14)0.0800 (17)0.0593 (13)0.0191 (13)0.0211 (10)0.0113 (11)
O30.0804 (16)0.099 (2)0.0575 (13)0.0188 (15)0.0195 (12)0.0206 (13)
C10.0520 (19)0.056 (2)0.0516 (17)0.0052 (17)0.0074 (15)−0.0072 (15)
C20.058 (2)0.049 (2)0.0529 (17)0.0074 (17)0.0018 (15)−0.0022 (15)
C30.044 (2)0.049 (3)0.055 (2)0.0000.0043 (19)0.000
C40.0450 (18)0.056 (2)0.0408 (15)−0.0017 (16)0.0093 (13)−0.0038 (15)
C50.0342 (16)0.045 (2)0.0447 (15)−0.0038 (15)0.0033 (13)−0.0061 (13)
C60.0365 (16)0.046 (2)0.0498 (16)−0.0021 (15)0.0093 (13)−0.0063 (14)
C70.053 (2)0.055 (2)0.0440 (16)−0.0018 (17)0.0059 (14)0.0002 (15)
C80.054 (2)0.055 (2)0.0579 (19)0.0044 (18)−0.0037 (16)0.0007 (16)
C90.0465 (19)0.063 (2)0.066 (2)0.0112 (17)0.0040 (16)−0.0084 (18)
C100.0471 (19)0.062 (2)0.0521 (17)0.0012 (17)0.0099 (14)−0.0109 (16)
N1—C41.273 (3)C3—H3A0.9700
N1—O11.405 (3)C3—H3B0.9700
O1—C11.431 (3)C4—C51.444 (4)
O2—C61.360 (3)C4—H40.9300
O2—H20.8200C5—C101.394 (4)
O3—C71.364 (3)C5—C61.396 (3)
O3—H30.8200C6—C71.386 (4)
C1—C21.500 (4)C7—C81.369 (4)
C1—H1A0.9700C8—C91.378 (4)
C1—H1B0.9700C8—H80.9300
C2—C31.518 (4)C9—C101.370 (4)
C2—H2A0.9700C9—H90.9300
C2—H2B0.9700C10—H100.9300
C3—C2i1.518 (4)
C4—N1—O1112.3 (2)N1—C4—C5120.9 (3)
N1—O1—C1108.47 (19)N1—C4—H4119.5
C6—O2—H2109.5C5—C4—H4119.5
C7—O3—H3109.5C10—C5—C6118.3 (3)
O1—C1—C2108.6 (2)C10—C5—C4119.8 (3)
O1—C1—H1A110.0C6—C5—C4122.0 (3)
C2—C1—H1A110.0O2—C6—C7116.5 (3)
O1—C1—H1B110.0O2—C6—C5123.4 (3)
C2—C1—H1B110.0C7—C6—C5120.2 (3)
H1A—C1—H1B108.4O3—C7—C8119.2 (3)
C1—C2—C3113.4 (3)O3—C7—C6120.7 (3)
C1—C2—H2A108.9C8—C7—C6120.1 (3)
C3—C2—H2A108.9C7—C8—C9120.5 (3)
C1—C2—H2B108.9C7—C8—H8119.8
C3—C2—H2B108.9C9—C8—H8119.8
H2A—C2—H2B107.7C10—C9—C8119.8 (3)
C2—C3—C2i112.6 (4)C10—C9—H9120.1
C2—C3—H3A109.1C8—C9—H9120.1
C2i—C3—H3A109.1C9—C10—C5121.2 (3)
C2—C3—H3B109.1C9—C10—H10119.4
C2i—C3—H3B109.1C5—C10—H10119.4
H3A—C3—H3B107.8
C4—N1—O1—C1−179.4 (2)O2—C6—C7—O3−0.2 (4)
N1—O1—C1—C2179.5 (2)C5—C6—C7—O3−179.2 (3)
O1—C1—C2—C3−66.3 (3)O2—C6—C7—C8−179.4 (3)
C1—C2—C3—C2i−178.9 (3)C5—C6—C7—C81.5 (4)
O1—N1—C4—C5179.6 (2)O3—C7—C8—C9178.9 (3)
N1—C4—C5—C10−179.2 (3)C6—C7—C8—C9−1.9 (5)
N1—C4—C5—C60.2 (4)C7—C8—C9—C101.2 (5)
C10—C5—C6—O2−179.5 (2)C8—C9—C10—C5−0.1 (5)
C4—C5—C6—O21.1 (4)C6—C5—C10—C9−0.2 (4)
C10—C5—C6—C7−0.5 (4)C4—C5—C10—C9179.2 (3)
C4—C5—C6—C7−179.9 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···N10.821.922.630 (3)144
O3—H3···O20.822.242.689 (3)115
O3—H3···O1ii0.822.292.958 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯N10.821.922.630 (3)144
O3—H3⋯O20.822.242.689 (3)115
O3—H3⋯O1i0.822.292.958 (3)139

Symmetry code: (i) .

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