Literature DB >> 21583070

Dimethyl [(4-fluoro-phen-yl)(6-methoxy-benzothia-zol-2-ylamino)meth-yl]phospho-nate.

Yan-Ping Hong, Bao-An Song, Xin-Chen Shangguan.   

Abstract

In the mol-ecule of title compound, C(17)H(18)FN(2)O(4)PS, both the benzene ring with its conjunction C atom and the benzothia-zole ring with its conjunction N atom are close to planar (the maximum deviations are 0.0267 and 0.0427 Å for the benzene and benzothiazole rings, respectively), the dihedral angle between the planes of the benzothia-zole and benzene rings is 119.05 (3)°. The mol-ecular packing is stabilized by inter-molecular N-H⋯O, C-H⋯N and C-H⋯F hydrogen bonding, and by C-H⋯π and π-π stacking inter-actions [centroid-centroid distances = 2.99 (2), 2.96 (3), 2.88 (2) and 3.773 (4) Å].

Entities:  

Year:  2009        PMID: 21583070      PMCID: PMC2969702          DOI: 10.1107/S1600536809015384

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of α-amino­phospho­nate derivatives, see: Kafarski & Lejczak (2001 ▶); De Lombaert et al. (1995 ▶); Du et al., (1999 ▶). For activities of α-amino­phospho­nate derivatives containing an F atom and benzothia­zole or iaoxazole units, see: Yang et al. (2005 ▶); Song et al. (2005 ▶); Jin et al. (2006 ▶). For related structures, see: Fang et al. (2009 ▶); Yang et al. (2005 ▶); Jin et al. (2006 ▶); Song et al. (2005 ▶); Alvarez et al. (2005 ▶); Chen & Li (1987 ▶); Li et al. (2008 ▶).

Experimental

Crystal data

C17H18FN2O4PS M = 396.36 Monoclinic, a = 19.761 (5) Å b = 15.781 (4) Å c = 14.395 (4) Å β = 122.109 (3)° V = 3802.4 (16) Å3 Z = 8 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.30 × 0.26 × 0.22 mm

Data collection

Bruker APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.919, T max = 0.939 9669 measured reflections 3428 independent reflections 2477 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.115 S = 1.04 3428 reflections 238 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAIn class="Chemical">NT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809015384/at2769sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809015384/at2769Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18FN2O4PSF(000) = 1648
Mr = 396.36Dx = 1.385 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5837 reflections
a = 19.761 (5) Åθ = 2.8–27.9°
b = 15.781 (4) ŵ = 0.29 mm1
c = 14.395 (4) ÅT = 296 K
β = 122.109 (3)°Block, colourless
V = 3802.4 (16) Å30.30 × 0.26 × 0.22 mm
Z = 8
Bruker APEXII area-detector diffractometer3428 independent reflections
Radiation source: fine-focus sealed tube2477 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 25.2°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −23→23
Tmin = 0.919, Tmax = 0.939k = −18→18
9669 measured reflectionsl = −15→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0545P)2 + 1.1262P] where P = (Fo2 + 2Fc2)/3
3428 reflections(Δ/σ)max < 0.001
238 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.07360 (4)0.28313 (4)0.06124 (5)0.0510 (2)
P10.20273 (4)0.09893 (4)−0.09266 (5)0.0483 (2)
N20.06939 (11)0.11776 (12)0.06276 (16)0.0477 (5)
C50.10708 (13)0.18124 (14)0.05470 (17)0.0421 (5)
C40.00865 (13)0.14714 (14)0.07713 (18)0.0445 (5)
C60.00177 (13)0.23554 (14)0.07921 (17)0.0438 (5)
C7−0.05321 (14)0.27298 (16)0.09682 (19)0.0524 (6)
H7−0.05680.33170.09810.063*
C1−0.10315 (14)0.22182 (16)0.11256 (19)0.0506 (6)
C3−0.04236 (14)0.09767 (16)0.0913 (2)0.0571 (7)
H3−0.03950.03900.08900.069*
C2−0.09822 (15)0.13484 (16)0.1089 (2)0.0563 (6)
H2−0.13260.10090.11840.068*
N10.16956 (11)0.17525 (12)0.04083 (17)0.0524 (5)
H10.19230.22090.03820.063*
C80.19929 (13)0.09419 (14)0.03023 (19)0.0452 (6)
H80.16050.05050.01960.054*
C90.27995 (14)0.06879 (14)0.12740 (18)0.0452 (6)
C110.37489 (18)−0.04111 (18)0.2316 (2)0.0659 (8)
H110.3884−0.09820.24390.079*
C100.30051 (17)−0.01584 (16)0.1484 (2)0.0560 (6)
H100.2630−0.05670.10490.067*
C140.33614 (15)0.12855 (17)0.1936 (2)0.0625 (7)
H140.32370.18590.18100.075*
C120.42812 (17)0.0196 (2)0.2955 (2)0.0684 (8)
C130.41102 (17)0.1034 (2)0.2788 (3)0.0751 (9)
H130.44890.14350.32380.090*
F10.50137 (11)−0.00510 (13)0.37934 (15)0.1064 (7)
O1−0.15552 (10)0.26361 (12)0.13111 (15)0.0658 (5)
C17−0.20925 (16)0.21423 (19)0.1466 (2)0.0707 (8)
H17A−0.24370.18220.08130.106*
H17B−0.24090.25110.16170.106*
H17C−0.17940.17620.20710.106*
O20.24876 (11)0.17048 (11)−0.09456 (13)0.0612 (5)
O40.23331 (10)0.01050 (10)−0.10441 (13)0.0555 (4)
O30.11234 (11)0.09795 (13)−0.18384 (15)0.0752 (6)
C160.31296 (19)−0.0033 (2)−0.0807 (3)0.0886 (10)
H16A0.32920.0444−0.10560.133*
H16B0.3138−0.0536−0.11770.133*
H16C0.3490−0.0101−0.00310.133*
C150.0861 (2)0.1088 (3)−0.2974 (3)0.1293 (16)
H15A0.11660.1532−0.30400.194*
H15B0.03050.1236−0.33860.194*
H15C0.09380.0569−0.32540.194*
U11U22U33U12U13U23
S10.0591 (4)0.0372 (4)0.0646 (4)−0.0040 (3)0.0382 (3)0.0005 (3)
P10.0512 (4)0.0440 (4)0.0452 (3)−0.0112 (3)0.0226 (3)−0.0035 (3)
N20.0461 (11)0.0395 (11)0.0582 (12)−0.0059 (9)0.0282 (10)−0.0038 (9)
C50.0426 (13)0.0393 (13)0.0389 (12)−0.0061 (10)0.0180 (11)−0.0032 (9)
C40.0451 (13)0.0396 (14)0.0455 (13)−0.0073 (10)0.0219 (11)−0.0049 (10)
C60.0455 (13)0.0416 (14)0.0425 (12)−0.0052 (11)0.0221 (11)−0.0035 (10)
C70.0572 (15)0.0428 (14)0.0582 (15)−0.0044 (12)0.0313 (13)−0.0054 (11)
C10.0490 (14)0.0532 (16)0.0514 (14)−0.0053 (12)0.0278 (12)−0.0090 (11)
C30.0579 (16)0.0412 (15)0.0777 (18)−0.0081 (12)0.0398 (15)−0.0053 (12)
C20.0549 (15)0.0535 (17)0.0678 (16)−0.0135 (12)0.0374 (14)−0.0064 (12)
N10.0529 (12)0.0390 (11)0.0741 (14)−0.0097 (9)0.0396 (11)−0.0039 (10)
C80.0488 (14)0.0367 (13)0.0547 (14)−0.0089 (11)0.0306 (12)−0.0056 (10)
C90.0538 (14)0.0431 (14)0.0464 (13)−0.0045 (11)0.0319 (12)−0.0008 (10)
C110.087 (2)0.0563 (18)0.0570 (16)0.0167 (16)0.0403 (17)0.0113 (14)
C100.0756 (18)0.0459 (16)0.0494 (14)−0.0029 (13)0.0352 (14)−0.0002 (11)
C140.0611 (17)0.0487 (16)0.0647 (17)−0.0037 (13)0.0247 (15)−0.0009 (13)
C120.0643 (18)0.079 (2)0.0573 (16)0.0179 (16)0.0290 (15)0.0111 (15)
C130.0598 (18)0.070 (2)0.0721 (19)−0.0062 (15)0.0192 (16)−0.0051 (15)
F10.0756 (12)0.1209 (17)0.0865 (13)0.0313 (11)0.0186 (10)0.0189 (11)
O10.0625 (11)0.0652 (12)0.0842 (13)−0.0062 (9)0.0488 (11)−0.0148 (10)
C170.0617 (18)0.087 (2)0.0781 (19)−0.0073 (15)0.0467 (16)−0.0076 (15)
O20.0787 (12)0.0477 (10)0.0626 (11)−0.0209 (9)0.0412 (10)−0.0049 (8)
O40.0680 (11)0.0442 (10)0.0622 (10)−0.0108 (8)0.0399 (9)−0.0105 (8)
O30.0579 (11)0.0853 (14)0.0560 (11)−0.0091 (10)0.0125 (10)0.0023 (10)
C160.093 (2)0.086 (2)0.125 (3)0.0037 (19)0.084 (2)0.003 (2)
C150.120 (3)0.149 (4)0.054 (2)−0.030 (3)0.003 (2)0.009 (2)
S1—C61.742 (2)C9—C141.381 (3)
S1—C51.760 (2)C9—C101.382 (3)
P1—O21.4593 (17)C11—C121.357 (4)
P1—O31.5560 (19)C11—C101.372 (4)
P1—O41.5653 (18)C11—H110.9300
P1—C81.807 (2)C10—H100.9300
N2—C51.290 (3)C14—C131.386 (4)
N2—C41.401 (3)C14—H140.9300
C5—N11.355 (3)C12—C131.355 (4)
C4—C31.373 (3)C12—F11.359 (3)
C4—C61.404 (3)C13—H130.9300
C6—C71.374 (3)O1—C171.427 (3)
C7—C11.384 (3)C17—H17A0.9600
C7—H70.9300C17—H17B0.9600
C1—O11.368 (3)C17—H17C0.9600
C1—C21.379 (3)O4—C161.439 (3)
C3—C21.388 (3)O3—C151.438 (4)
C3—H30.9300C16—H16A0.9600
C2—H20.9300C16—H16B0.9600
N1—C81.449 (3)C16—H16C0.9600
N1—H10.8600C15—H15A0.9600
C8—C91.513 (3)C15—H15B0.9600
C8—H80.9800C15—H15C0.9600
C6—S1—C588.47 (10)C14—C9—C8121.5 (2)
O2—P1—O3116.07 (11)C10—C9—C8120.1 (2)
O2—P1—O4114.04 (10)C12—C11—C10118.1 (3)
O3—P1—O4103.65 (10)C12—C11—H11120.9
O2—P1—C8113.48 (10)C10—C11—H11120.9
O3—P1—C8101.64 (11)C11—C10—C9121.7 (3)
O4—P1—C8106.64 (10)C11—C10—H10119.1
C5—N2—C4109.72 (19)C9—C10—H10119.1
N2—C5—N1125.0 (2)C9—C14—C13120.3 (3)
N2—C5—S1116.95 (17)C9—C14—H14119.9
N1—C5—S1118.01 (17)C13—C14—H14119.9
C3—C4—N2126.0 (2)C13—C12—C11122.6 (3)
C3—C4—C6118.4 (2)C13—C12—F1119.0 (3)
N2—C4—C6115.62 (19)C11—C12—F1118.4 (3)
C7—C6—C4121.8 (2)C12—C13—C14119.0 (3)
C7—C6—S1128.96 (18)C12—C13—H13120.5
C4—C6—S1109.24 (16)C14—C13—H13120.5
C6—C7—C1118.8 (2)C1—O1—C17118.1 (2)
C6—C7—H7120.6O1—C17—H17A109.5
C1—C7—H7120.6O1—C17—H17B109.5
O1—C1—C2124.3 (2)H17A—C17—H17B109.5
O1—C1—C7115.5 (2)O1—C17—H17C109.5
C2—C1—C7120.2 (2)H17A—C17—H17C109.5
C4—C3—C2120.3 (2)H17B—C17—H17C109.5
C4—C3—H3119.8C16—O4—P1123.11 (18)
C2—C3—H3119.8C15—O3—P1121.1 (2)
C1—C2—C3120.5 (2)O4—C16—H16A109.5
C1—C2—H2119.8O4—C16—H16B109.5
C3—C2—H2119.8H16A—C16—H16B109.5
C5—N1—C8121.96 (19)O4—C16—H16C109.5
C5—N1—H1119.0H16A—C16—H16C109.5
C8—N1—H1119.0H16B—C16—H16C109.5
N1—C8—C9115.05 (18)O3—C15—H15A109.5
N1—C8—P1107.14 (15)O3—C15—H15B109.5
C9—C8—P1110.28 (15)H15A—C15—H15B109.5
N1—C8—H8108.0O3—C15—H15C109.5
C9—C8—H8108.0H15A—C15—H15C109.5
P1—C8—H8108.0H15B—C15—H15C109.5
C14—C9—C10118.3 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.861.992.793 (3)156
C8—H8···N20.982.442.868 (4)106
C14—H14···N10.932.622.919 (5)100
C16—H16C···F1ii0.962.513.2496133
C15—H15B···Cg1iii0.962.993.608 (4)123
C16—H16B···Cg3iv0.962.963.549 (4)121
C17—H17C···Cg1v0.962.883.625 (3)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.861.992.793 (3)156
C16—H16C⋯F1ii0.962.513.2496133
C15—H15BCg1iii0.962.993.608 (4)123
C16—H16BCg3iv0.962.963.549 (4)121
C17—H17CCg1v0.962.883.625 (3)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) . Cg1 and Cg3 are the centroids of the S1/N2/C4–C6 and C9–C14 rings, respectively.

  6 in total

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6.  Diisopropyl [(benzoyl-amino)-(phen-yl)meth-yl]phospho-nate.

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  6 in total

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