Literature DB >> 21203253

(S)-2-[(2-Ammonio-phenyl)-sulfanyl-methyl]pyrrolidinium dibromide.

Bailin Li, Shuai Zhang, Yifeng Wang, Shuping Luo.   

Abstract

In the title compound, C(11)H(18)N(2)S(2+)·2Br(-), the pyrrolidine ring displays a half-chair conformation, with the flap C atom lying 0.522 (5) Å out of the plane of the other four atoms. The methyl-ene C atom, which connects the pyrrolidinium ring and the thio-ether group, is displaced from the plane of four pyrrolidinium atoms by 0.690 (6) Å in the same direction as the flap C atom. The plane of four pyrrolidinium atoms is almost perpendicular to the benzene ring [dihedral angle = 75.02 (4)°]. The crystal structure is stabilized by hydrogen bonds between the N and Br atoms.

Entities:  

Year:  2008        PMID: 21203253      PMCID: PMC2962173          DOI: 10.1107/S1600536808021089

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis of (S)-(+)-2-bromo­methyl­pyrrolidine hydro­bromide was described by Xu et al. (2006 ▶). The development of asymmetric organocatalysis was reviewed by Seayad & List (2005 ▶).

Experimental

Crystal data

C11H18N2S2+·2Br M = 370.15 Orthorhombic, a = 7.9399 (9) Å b = 10.8427 (13) Å c = 17.658 (2) Å V = 1520.2 (3) Å3 Z = 4 Mo Kα radiation μ = 5.45 mm−1 T = 293 (2) K 0.49 × 0.42 × 0.36 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.103, T max = 0.137 8969 measured reflections 3311 independent reflections 1808 reflections with I > 2σ(I) R int = 0.136

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.134 S = 0.83 3311 reflections 158 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.67 e Å−3 Δρmin = −0.50 e Å−3 Absolute structure: Flack (1983 ▶), 1394 Friedel pairs Flack parameter: 0.00 (2) Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2000 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808021089/pk2105sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808021089/pk2105Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H18N2S2+·2BrF000 = 736
Mr = 370.15Dx = 1.617 Mg m3
Orthorhombic, P212121Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 1525 reflections
a = 7.9399 (9) Åθ = 4.4–38.3º
b = 10.8427 (13) ŵ = 5.45 mm1
c = 17.658 (2) ÅT = 293 (2) K
V = 1520.2 (3) Å3Prismatic, colorless
Z = 40.49 × 0.42 × 0.37 mm
Bruker SMART CCD area-detector diffractometer3311 independent reflections
Radiation source: fine-focus sealed tube1808 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.136
T = 293(2) Kθmax = 27.0º
φ and ω scansθmin = 2.2º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −9→10
Tmin = 0.103, Tmax = 0.137k = −13→12
8969 measured reflectionsl = −22→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.058  w = 1/[σ2(Fo2) + (0.049P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.134(Δ/σ)max < 0.001
S = 0.83Δρmax = 0.67 e Å3
3311 reflectionsΔρmin = −0.50 e Å3
158 parametersExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
3 restraintsExtinction coefficient: 0.0005 (1)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 1394 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.00 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.30470 (12)−0.24305 (9)−0.08797 (5)0.0559 (3)
Br2−0.38177 (12)0.34415 (8)0.06967 (5)0.0526 (3)
S1−0.0443 (3)0.1034 (2)0.14946 (13)0.0524 (6)
N10.0399 (9)0.3571 (6)0.0600 (4)0.0502 (18)
H1A0.06360.29390.02880.060*
H1B−0.07280.36500.06300.060*
N20.1147 (12)−0.0815 (8)0.0452 (5)0.0487 (18)
C10.1159 (18)0.4726 (9)0.0308 (7)0.083 (3)
H1C0.02960.52730.01110.100*
H1D0.19590.4549−0.00930.100*
C20.2025 (14)0.5297 (9)0.0973 (7)0.072 (3)
H2A0.32370.52250.09210.087*
H2B0.17350.61640.10130.087*
C30.1443 (14)0.4625 (9)0.1640 (6)0.068 (3)
H3A0.04200.49900.18400.081*
H3B0.22970.46270.20330.081*
C40.1120 (12)0.3339 (8)0.1362 (4)0.049 (2)
H40.21940.29010.13090.059*
C5−0.0079 (11)0.2577 (8)0.1852 (4)0.052 (2)
H5A−0.11500.30040.18850.062*
H5B0.03810.25190.23590.062*
C60.1553 (11)0.0316 (8)0.1640 (5)0.047 (2)
C70.2504 (11)0.0537 (9)0.2270 (5)0.056 (3)
H70.21170.10920.26320.068*
C80.4032 (13)−0.0049 (10)0.2382 (6)0.073 (3)
H80.46800.01380.28050.087*
C90.4579 (14)−0.0887 (10)0.1879 (6)0.071 (3)
H90.5602−0.12850.19560.085*
C100.3611 (11)−0.1161 (8)0.1239 (5)0.053 (2)
H100.3980−0.17500.08930.063*
C110.2112 (12)−0.0555 (8)0.1123 (5)0.045 (2)
H2C0.157 (10)−0.127 (6)0.012 (4)0.06 (3)*
H2D0.094 (12)−0.032 (6)0.010 (3)0.06 (3)*
H2E0.043 (10)−0.135 (7)0.054 (6)0.09 (4)*
U11U22U33U12U13U23
Br10.0514 (6)0.0627 (5)0.0536 (6)0.0081 (5)−0.0055 (4)−0.0024 (5)
Br20.0526 (6)0.0614 (5)0.0438 (5)0.0072 (5)−0.0041 (4)−0.0022 (5)
S10.0412 (14)0.0682 (15)0.0479 (14)0.0052 (12)0.0015 (11)0.0049 (12)
N10.045 (4)0.060 (4)0.046 (4)0.007 (4)0.004 (3)−0.001 (4)
N20.054 (5)0.048 (5)0.044 (5)−0.003 (5)0.002 (5)−0.002 (4)
C10.105 (10)0.061 (7)0.084 (8)0.010 (7)0.005 (8)0.006 (6)
C20.055 (7)0.055 (6)0.107 (10)0.005 (5)0.010 (7)−0.017 (6)
C30.062 (8)0.074 (7)0.067 (7)−0.006 (6)−0.007 (6)−0.021 (6)
C40.038 (5)0.066 (6)0.044 (5)0.015 (5)0.000 (4)0.003 (5)
C50.053 (6)0.070 (6)0.033 (4)0.019 (6)0.002 (4)−0.009 (5)
C60.033 (6)0.062 (6)0.046 (5)0.008 (4)−0.006 (4)0.010 (4)
C70.043 (6)0.077 (7)0.048 (6)0.012 (5)0.003 (5)0.000 (5)
C80.062 (8)0.102 (8)0.055 (7)0.010 (7)−0.022 (6)−0.008 (6)
C90.054 (7)0.103 (8)0.056 (7)0.028 (7)−0.005 (6)−0.001 (6)
C100.046 (6)0.061 (6)0.051 (5)0.022 (5)0.011 (5)0.010 (4)
C110.044 (6)0.059 (6)0.031 (5)0.000 (5)0.000 (4)0.007 (4)
Br1—H2C2.47 (7)C3—C41.500 (12)
Br2—H1B2.4665C3—H3A0.9700
S1—C61.784 (8)C3—H3B0.9700
S1—C51.811 (9)C4—C51.529 (12)
N1—C11.483 (12)C4—H40.9800
N1—C41.484 (10)C5—H5A0.9700
N1—H1A0.9000C5—H5B0.9700
N1—H1B0.9000C6—C71.366 (11)
N2—C111.438 (11)C6—C111.388 (11)
N2—H2C0.84 (7)C7—C81.383 (13)
N2—H2D0.84 (6)C7—H70.9300
N2—H2E0.83 (8)C8—C91.343 (13)
C1—C21.495 (14)C8—H80.9300
C1—H1C0.9700C9—C101.399 (13)
C1—H1D0.9700C9—H90.9300
C2—C31.460 (13)C10—C111.374 (12)
C2—H2A0.9700C10—H100.9300
C2—H2B0.9700
C6—S1—C5102.2 (4)N1—C4—C3101.8 (7)
C1—N1—C4107.5 (8)N1—C4—C5111.3 (7)
C1—N1—H1A110.2C3—C4—C5115.1 (8)
C4—N1—H1A110.2N1—C4—H4109.4
C1—N1—H1B110.2C3—C4—H4109.4
C4—N1—H1B110.2C5—C4—H4109.4
H1A—N1—H1B108.5C4—C5—S1113.7 (6)
C11—N2—H2C118 (6)C4—C5—H5A108.8
C11—N2—H2D126 (6)S1—C5—H5A108.8
H2C—N2—H2D87 (7)C4—C5—H5B108.8
C11—N2—H2E111 (7)S1—C5—H5B108.8
H2C—N2—H2E90 (9)H5A—C5—H5B107.7
H2D—N2—H2E117 (10)C7—C6—C11118.6 (8)
N1—C1—C2105.3 (9)C7—C6—S1122.1 (7)
N1—C1—H1C110.7C11—C6—S1119.1 (7)
C2—C1—H1C110.7C6—C7—C8121.3 (9)
N1—C1—H1D110.7C6—C7—H7119.3
C2—C1—H1D110.7C8—C7—H7119.3
H1C—C1—H1D108.8C9—C8—C7120.0 (10)
C3—C2—C1106.3 (8)C9—C8—H8120.0
C3—C2—H2A110.5C7—C8—H8120.0
C1—C2—H2A110.5C8—C9—C10120.1 (9)
C3—C2—H2B110.5C8—C9—H9120.0
C1—C2—H2B110.5C10—C9—H9120.0
H2A—C2—H2B108.7C11—C10—C9119.6 (9)
C2—C3—C4104.7 (7)C11—C10—H10120.2
C2—C3—H3A110.8C9—C10—H10120.2
C4—C3—H3A110.8C10—C11—C6120.3 (8)
C2—C3—H3B110.8C10—C11—N2119.4 (8)
C4—C3—H3B110.8C6—C11—N2120.3 (8)
H3A—C3—H3B108.9
C4—N1—C1—C2−12.2 (11)C11—C6—C7—C82.8 (14)
N1—C1—C2—C3−12.1 (11)S1—C6—C7—C8178.6 (8)
C1—C2—C3—C431.4 (11)C6—C7—C8—C9−2.4 (15)
C1—N1—C4—C330.7 (10)C7—C8—C9—C100.5 (16)
C1—N1—C4—C5153.8 (8)C8—C9—C10—C111.0 (15)
C2—C3—C4—N1−38.0 (10)C9—C10—C11—C6−0.6 (13)
C2—C3—C4—C5−158.6 (8)C9—C10—C11—N2178.2 (9)
N1—C4—C5—S164.5 (8)C7—C6—C11—C10−1.3 (12)
C3—C4—C5—S1179.7 (7)S1—C6—C11—C10−177.2 (6)
C6—S1—C5—C469.0 (6)C7—C6—C11—N2180.0 (8)
C5—S1—C6—C738.7 (8)S1—C6—C11—N24.1 (11)
C5—S1—C6—C11−145.6 (7)
D—H···AD—HH···AD···AD—H···A
N2—H2E···Br1i0.83 (8)2.39 (8)3.201 (9)169 (10)
N2—H2D···Br2ii0.84 (6)2.48 (4)3.277 (9)159 (8)
N2—H2C···Br10.84 (7)2.47 (7)3.298 (9)173 (8)
N1—H1B···Br20.902.473.355 (7)169
N1—H1A···Br2ii0.902.333.224 (7)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2E⋯Br1i0.83 (8)2.39 (8)3.201 (9)169 (10)
N2—H2D⋯Br2ii0.84 (6)2.48 (4)3.277 (9)159 (8)
N2—H2C⋯Br10.84 (7)2.47 (7)3.298 (9)173 (8)
N1—H1B⋯Br20.902.473.355 (7)169
N1—H1A⋯Br2ii0.902.333.224 (7)170

Symmetry codes: (i) ; (ii) .

  2 in total

Review 1.  Asymmetric organocatalysis.

Authors:  Jayasree Seayad; Benjamin List
Journal:  Org Biomol Chem       Date:  2005-02-09       Impact factor: 3.876

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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1.  Dimethyl [(4-fluoro-phen-yl)(6-methoxy-benzothia-zol-2-ylamino)meth-yl]phospho-nate.

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