Literature DB >> 21582878

2-(1H-Benzimidazol-1-yl)-1-(2-fur-yl)ethanone O-isopropyl-oxime.

Ozden Ozel Güven, Taner Erdoğan, Simon J Coles, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(16)H(17)N(3)O(2), the planar benzimidazole ring system [maximum deviation = 0.015 (2) Å] is oriented at a dihedral angle of 72.17 (4)° with respect to the furan ring. An intra-molecular C-H⋯O inter-action results in the formation of a six-membered ring having an envelope conformation. In the crystal structure, inter-molecular C-H⋯N inter-actions link the mol-ecules into centrosymmetric R(2) (2)(18) dimers.

Entities:  

Year:  2009        PMID: 21582878      PMCID: PMC2969188          DOI: 10.1107/S1600536809022302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to oximes and oxime ethers, including their biological activity, see: Baji et al. (1995 ▶); Bhandari et al. (2009 ▶); Emami et al. (2002 ▶, 2004 ▶); Milanese et al. (2007 ▶); Polak (1982 ▶); Poretta et al. (1993 ▶); Ramalingan et al. (2006 ▶); Rosello et al. (2002 ▶). For related structures, see: Özel Güven et al. (2007a ▶,b ▶, 2009 ▶). For ring-motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H17N3O2 M = 283.33 Monoclinic, a = 8.4290 (2) Å b = 17.7606 (3) Å c = 10.6017 (2) Å β = 111.882 (1)° V = 1472.77 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 120 K 0.40 × 0.20 × 0.20 mm

Data collection

Bruker–Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.966, T max = 0.979 20597 measured reflections 3356 independent reflections 2803 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.111 S = 1.12 3356 reflections 259 parameters All H-atom parameters refined Δρmax = 0.27 e Å−3 Δρmin = −0.28 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022302/im2123sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022302/im2123Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17N3O2F(000) = 600
Mr = 283.33Dx = 1.278 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3444 reflections
a = 8.4290 (2) Åθ = 2.9–27.5°
b = 17.7606 (3) ŵ = 0.09 mm1
c = 10.6017 (2) ÅT = 120 K
β = 111.882 (1)°Plate, yellow
V = 1472.77 (5) Å30.40 × 0.20 × 0.20 mm
Z = 4
Bruker–Nonius KappaCCD diffractometer3356 independent reflections
Radiation source: fine-focus sealed tube2803 reflections with I > 2σ(I)
graphiteRint = 0.035
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 3.1°
φ and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −23→23
Tmin = 0.966, Tmax = 0.979l = −13→12
20597 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042All H-atom parameters refined
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0577P)2 + 0.2982P] where P = (Fo2 + 2Fc2)/3
S = 1.12(Δ/σ)max < 0.001
3356 reflectionsΔρmax = 0.27 e Å3
259 parametersΔρmin = −0.28 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.091 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.58682 (11)0.47550 (5)0.80555 (8)0.0252 (2)
O20.41827 (11)0.33276 (5)1.02341 (8)0.0247 (2)
N10.19899 (13)0.45752 (5)0.64047 (9)0.0205 (2)
N20.18669 (14)0.44880 (6)0.42568 (10)0.0278 (3)
N30.30106 (13)0.38505 (6)0.94150 (10)0.0226 (2)
C10.25496 (17)0.48323 (7)0.54285 (12)0.0244 (3)
H10.3367 (18)0.5250 (8)0.5619 (14)0.025 (3)*
C20.07716 (15)0.39595 (7)0.44673 (12)0.0241 (3)
C3−0.03026 (17)0.34334 (8)0.35695 (13)0.0318 (3)
H3−0.032 (2)0.3408 (9)0.2646 (17)0.038 (4)*
C4−0.12897 (19)0.29830 (9)0.40499 (15)0.0386 (4)
H4−0.203 (2)0.2612 (11)0.3450 (18)0.051 (5)*
C5−0.12247 (18)0.30444 (8)0.53863 (15)0.0360 (3)
H5−0.196 (2)0.2724 (10)0.5696 (17)0.045 (5)*
C6−0.01575 (16)0.35542 (7)0.62975 (14)0.0282 (3)
H6−0.0111 (19)0.3597 (8)0.7232 (16)0.031 (4)*
C70.08317 (14)0.40074 (6)0.58065 (11)0.0212 (3)
C80.25028 (16)0.48361 (7)0.78092 (12)0.0222 (3)
H810.3035 (17)0.5328 (8)0.7868 (13)0.022 (3)*
H820.1471 (19)0.4885 (8)0.8028 (14)0.026 (4)*
C90.37140 (15)0.42870 (6)0.87967 (11)0.0197 (3)
C100.54860 (15)0.42703 (6)0.89174 (11)0.0198 (3)
C110.69233 (16)0.38863 (7)0.96787 (12)0.0236 (3)
H110.6964 (19)0.3507 (9)1.0364 (15)0.030 (4)*
C120.82605 (17)0.41455 (7)0.92724 (13)0.0289 (3)
H120.941 (2)0.3979 (9)0.9589 (17)0.040 (4)*
C130.75635 (17)0.46619 (8)0.82951 (13)0.0296 (3)
H130.799 (2)0.4959 (9)0.7728 (16)0.037 (4)*
C140.33484 (16)0.28212 (7)1.08724 (13)0.0265 (3)
H140.219 (2)0.2716 (9)1.0207 (15)0.031 (4)*
C150.3264 (3)0.31843 (10)1.21285 (18)0.0463 (4)
H1510.446 (3)0.3321 (12)1.281 (2)0.061 (6)*
H1520.254 (3)0.3634 (12)1.189 (2)0.060 (6)*
H1530.272 (3)0.2848 (11)1.2585 (19)0.060 (5)*
C160.44161 (18)0.21125 (8)1.11657 (14)0.0316 (3)
H1610.446 (2)0.1863 (10)1.0273 (18)0.048 (5)*
H1620.398 (2)0.1768 (10)1.1676 (18)0.048 (5)*
H1630.559 (2)0.2239 (9)1.1768 (17)0.040 (4)*
U11U22U33U12U13U23
O10.0290 (5)0.0255 (4)0.0222 (4)−0.0023 (3)0.0109 (4)0.0052 (3)
O20.0236 (5)0.0258 (4)0.0235 (4)−0.0009 (3)0.0075 (3)0.0090 (3)
N10.0244 (5)0.0197 (5)0.0171 (5)0.0029 (4)0.0074 (4)0.0016 (4)
N20.0345 (6)0.0279 (5)0.0204 (5)0.0050 (4)0.0098 (4)0.0049 (4)
N30.0253 (5)0.0231 (5)0.0179 (5)0.0015 (4)0.0063 (4)0.0020 (4)
C10.0310 (7)0.0213 (6)0.0212 (6)0.0025 (5)0.0100 (5)0.0049 (4)
C20.0236 (6)0.0251 (6)0.0200 (6)0.0078 (5)0.0038 (5)0.0027 (4)
C30.0300 (7)0.0332 (7)0.0227 (6)0.0077 (6)−0.0012 (5)−0.0023 (5)
C40.0270 (7)0.0369 (7)0.0388 (8)−0.0018 (6)−0.0029 (6)−0.0080 (6)
C50.0258 (7)0.0353 (7)0.0435 (8)−0.0040 (6)0.0088 (6)0.0002 (6)
C60.0240 (6)0.0307 (6)0.0310 (7)0.0018 (5)0.0115 (5)0.0023 (5)
C70.0189 (6)0.0212 (5)0.0209 (6)0.0057 (4)0.0043 (4)0.0007 (4)
C80.0288 (7)0.0197 (6)0.0185 (6)0.0030 (5)0.0092 (5)−0.0010 (4)
C90.0259 (6)0.0182 (5)0.0146 (5)−0.0004 (4)0.0069 (4)−0.0026 (4)
C100.0272 (6)0.0175 (5)0.0149 (5)−0.0032 (4)0.0082 (4)−0.0014 (4)
C110.0274 (6)0.0226 (6)0.0203 (6)−0.0002 (5)0.0082 (5)0.0004 (4)
C120.0260 (7)0.0323 (7)0.0289 (7)−0.0009 (5)0.0110 (5)0.0000 (5)
C130.0282 (7)0.0340 (7)0.0297 (7)−0.0046 (5)0.0144 (5)0.0010 (5)
C140.0251 (6)0.0283 (6)0.0252 (6)−0.0067 (5)0.0082 (5)0.0061 (5)
C150.0648 (12)0.0454 (9)0.0409 (9)−0.0056 (9)0.0340 (9)0.0029 (7)
C160.0288 (7)0.0292 (7)0.0306 (7)−0.0061 (5)0.0039 (6)0.0094 (5)
O1—C101.3782 (13)C6—H60.980 (15)
O1—C131.3650 (16)C8—C91.5142 (16)
O2—N31.3976 (12)C8—H810.973 (14)
O2—C141.4547 (14)C8—H820.984 (15)
N1—C11.3661 (15)C9—C101.4511 (17)
N1—C71.3823 (15)C10—C111.3621 (17)
N1—C81.4625 (15)C11—C121.4247 (18)
N2—C11.3096 (16)C11—H110.981 (15)
N2—C21.3917 (17)C12—H120.948 (17)
N3—C91.2929 (15)C13—C121.3440 (19)
C1—H10.981 (15)C13—H130.964 (17)
C2—C31.3988 (18)C14—C151.505 (2)
C2—C71.4043 (17)C14—H140.988 (16)
C3—C41.381 (2)C15—H1511.02 (2)
C3—H30.974 (16)C15—H1520.98 (2)
C4—H40.966 (19)C15—H1530.98 (2)
C5—C41.402 (2)C16—C141.5107 (19)
C5—H50.983 (17)C16—H1611.057 (18)
C6—C51.3836 (19)C16—H1630.982 (17)
C6—C71.3919 (18)C16—H1620.973 (19)
C13—O1—C10106.74 (9)N3—C9—C10126.47 (10)
N3—O2—C14110.34 (9)N3—C9—C8114.73 (11)
C1—N1—C7106.29 (10)C10—C9—C8118.73 (10)
C1—N1—C8127.66 (10)C11—C10—O1109.24 (10)
C7—N1—C8126.05 (10)C11—C10—C9136.17 (11)
C1—N2—C2104.24 (10)O1—C10—C9114.58 (10)
C9—N3—O2111.22 (9)C10—C11—C12106.75 (11)
N2—C1—N1114.13 (11)C10—C11—H11124.1 (9)
N2—C1—H1125.1 (8)C12—C11—H11129.2 (9)
N1—C1—H1120.7 (8)C13—C12—C11106.61 (12)
N2—C2—C3129.89 (12)C13—C12—H12125.5 (10)
N2—C2—C7110.19 (10)C11—C12—H12127.8 (10)
C3—C2—C7119.91 (12)C12—C13—O1110.65 (11)
C4—C3—C2117.53 (13)C12—C13—H13134.2 (10)
C4—C3—H3123.9 (10)O1—C13—H13115.1 (9)
C2—C3—H3118.6 (10)O2—C14—C15109.71 (11)
C3—C4—C5121.71 (13)O2—C14—C16104.87 (10)
C3—C4—H4118.9 (10)C15—C14—C16113.33 (12)
C5—C4—H4119.4 (10)O2—C14—H14107.9 (9)
C6—C5—C4121.81 (14)C15—C14—H14110.6 (9)
C6—C5—H5118.2 (10)C16—C14—H14110.2 (9)
C4—C5—H5120.0 (10)C14—C15—H151111.3 (11)
C5—C6—C7116.20 (12)C14—C15—H152110.8 (12)
C5—C6—H6121.9 (9)H151—C15—H152109.8 (17)
C7—C6—H6121.9 (9)C14—C15—H153111.1 (11)
N1—C7—C6132.02 (11)H151—C15—H153108.3 (15)
N1—C7—C2105.14 (10)H152—C15—H153105.3 (16)
C6—C7—C2122.83 (11)C14—C16—H161112.4 (9)
N1—C8—C9111.54 (9)C14—C16—H163108.7 (10)
N1—C8—H82108.4 (8)H161—C16—H163108.5 (14)
C9—C8—H82108.8 (8)C14—C16—H162108.6 (11)
N1—C8—H81107.7 (8)H161—C16—H162112.2 (14)
C9—C8—H81111.0 (8)H163—C16—H162106.1 (14)
H82—C8—H81109.4 (12)
C13—O1—C10—C110.18 (12)C7—C2—C3—C40.80 (18)
C13—O1—C10—C9−179.51 (10)N2—C2—C7—N1−0.13 (13)
C10—O1—C13—C12−0.41 (14)C3—C2—C7—N1−179.70 (10)
C14—O2—N3—C9−177.47 (9)N2—C2—C7—C6178.84 (11)
N3—O2—C14—C15−82.98 (13)C3—C2—C7—C6−0.73 (18)
N3—O2—C14—C16155.00 (9)C2—C3—C4—C5−0.2 (2)
C7—N1—C1—N20.10 (14)C6—C5—C4—C3−0.6 (2)
C8—N1—C1—N2179.73 (11)C7—C6—C5—C40.7 (2)
C1—N1—C7—C6−178.81 (12)C5—C6—C7—N1178.63 (12)
C8—N1—C7—C61.55 (19)C5—C6—C7—C2−0.03 (18)
C1—N1—C7—C20.03 (12)N1—C8—C9—N3−100.58 (12)
C8—N1—C7—C2−179.62 (10)N1—C8—C9—C1076.58 (13)
C1—N1—C8—C9−104.20 (13)N3—C9—C10—C11−5.0 (2)
C7—N1—C8—C975.38 (14)C8—C9—C10—C11178.23 (12)
C2—N2—C1—N1−0.17 (14)N3—C9—C10—O1174.60 (10)
C1—N2—C2—C3179.70 (12)C8—C9—C10—O1−2.19 (14)
C1—N2—C2—C70.18 (13)O1—C10—C11—C120.10 (13)
O2—N3—C9—C10−1.02 (15)C9—C10—C11—C12179.69 (12)
O2—N3—C9—C8175.89 (9)C10—C11—C12—C13−0.34 (14)
N2—C2—C3—C4−178.67 (12)O1—C13—C12—C110.46 (15)
D—H···AD—HH···AD···AD—H···A
C11—H11···O20.98 (2)2.32 (2)2.772 (2)107 (1)
C13—H13···N2i0.96 (2)2.37 (2)3.286 (2)159 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯O20.98 (2)2.32 (2)2.772 (2)107 (1)
C13—H13⋯N2i0.96 (2)2.37 (2)3.286 (2)159 (1)

Symmetry code: (i) .

  10 in total

1.  Stereoselective synthesis and antifungal activity of (Z)-trans-3-azolyl-2-methylchromanone oxime ethers.

Authors:  Saeed Emami; Mehraban Falahati; Ali Banifatemi; Abbas Shafiee
Journal:  Bioorg Med Chem       Date:  2004-11-15       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, antifungal activity, and molecular modeling studies of new inverted oxime ethers of oxiconazole.

Authors:  Armando Rossello; Simone Bertini; Annalina Lapucci; Marco Macchia; Adriano Martinelli; Simona Rapposelli; Esperanza Herreros; Bruno Macchia
Journal:  J Med Chem       Date:  2002-10-24       Impact factor: 7.446

4.  Synthesis, stereochemistry, and antimicrobial evaluation of substituted piperidin-4-one oxime ethers.

Authors:  C Ramalingan; Y T Park; S Kabilan
Journal:  Eur J Med Chem       Date:  2006-04-04       Impact factor: 6.514

5.  Stereoselective synthesis and in vitro antifungal evaluation of (E)- and (Z)-imidazolylchromanone oxime ethers.

Authors:  Saeed Emami; Mehraban Falahati; Ali Banifatemi; Kayvan Moshiri; Abbas Shafiee
Journal:  Arch Pharm (Weinheim)       Date:  2002-07       Impact factor: 3.751

6.  2-(1H-Benzimidazol-1-yl)-1-(2-furyl)ethanone O-propyloxime.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

7.  Tetrahydronaphthyl azole oxime ethers: the conformationally rigid analogues of oxiconazole as antibacterials.

Authors:  Kalpana Bhandari; Nagarapu Srinivas; G B Shiva Keshava; Praveen K Shukla
Journal:  Eur J Med Chem       Date:  2008-01-25       Impact factor: 6.514

8.  Oxiconazole, a new imidazole derivative. Evaluation of antifungal activity in vitro and in vivo.

Authors:  A Polak
Journal:  Arzneimittelforschung       Date:  1982

9.  Oxime and oxime ether derivatives of 1,4-benzothiazine related to oxiconazole.

Authors:  Lara Milanese; Nicola Giacchè; Fausto Schiaffella; Anna Vecchiarelli; Antonio Macchiarulo; Renata Fringuelli
Journal:  ChemMedChem       Date:  2007-08       Impact factor: 3.466

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  10 in total
  1 in total

1.  2-(1H-Benzimidazol-1-yl)-1-(2-fur-yl)ethanone O-ethyl-oxime.

Authors:  Ozden Ozel Güven; Taner Erdoğan; M Nawaz Tahir; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.