Literature DB >> 21582809

2-(1H-Benzimidazol-1-yl)-1-(2-furyl)ethanone O-propyloxime.

Ozden Ozel Güven, Taner Erdoğan, Simon J Coles, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(16)H(17)N(3)O(2), the planar benzimidazole ring system [maximum deviation = 0.013 (1) Å] is oriented at a dihedral angle of 75.32 (4)° with respect to the furan ring. An intra-molecular C-H⋯O inter-action results in the formation of a planar six-membered ring [maximum deviation = 0.019 (15) Å], which is oriented at a dihedral angle of 1.91 (3)° with respect to the adjacent furan ring. In the crystal structure, inter-molecular C-H⋯N inter-actions link the mol-ecules into centrosymmetric R(2) (2)(18) dimers. In addition, the structure is stabilized by π-π contacts between the imidazole rings [centroid-centroid distance = 3.5307 (8) Å] and weak C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21582809      PMCID: PMC2969417          DOI: 10.1107/S1600536809020844

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Several compounds containing an oxime or an oxime ether function have been reported to exhibit anti­microbial activity, see: Baji et al. (1995 ▶); Bhandari et al. (2009 ▶); Emami et al. (2002 ▶, 2004 ▶); Milanese et al. (2007 ▶); Polak (1982 ▶); Poretta et al. (1993 ▶); Ramalingan et al. (2006 ▶); Rosello et al. (2002 ▶). For related structures, see: Özel Güven et al. (2007a ▶,b ▶). For ring motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H17N3O2 M = 283.33 Monoclinic, a = 8.4164 (2) Å b = 18.2524 (3) Å c = 10.2246 (2) Å β = 111.354 (1)° V = 1462.87 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 120 K 0.50 × 0.35 × 0.35 mm

Data collection

Bruker–Nonius Kappa CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.958, T max = 0.960 19714 measured reflections 3344 independent reflections 2755 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.114 S = 1.14 3344 reflections 259 parameters All H-atom parameters refined Δρmax = 0.37 e Å−3 Δρmin = −0.36 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO nd COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809020844/ci2817sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809020844/ci2817Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H17N3O2F(000) = 600
Mr = 283.33Dx = 1.286 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3395 reflections
a = 8.4164 (2) Åθ = 2.9–27.5°
b = 18.2524 (3) ŵ = 0.09 mm1
c = 10.2246 (2) ÅT = 120 K
β = 111.354 (1)°Block, pale yellow
V = 1462.87 (5) Å30.50 × 0.35 × 0.35 mm
Z = 4
Bruker–Nonius Kappa CCD diffractometer3344 independent reflections
Radiation source: fine-focus sealed tube2755 reflections with I > 2σ(I)
graphiteRint = 0.038
Detector resolution: 9.091 pixels mm-1θmax = 27.5°, θmin = 2.9°
φ & ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −23→23
Tmin = 0.958, Tmax = 0.960l = −13→13
19714 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043All H-atom parameters refined
wR(F2) = 0.114w = 1/[σ2(Fo2) + (0.0594P)2 + 0.2758P] where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max = 0.001
3344 reflectionsΔρmax = 0.37 e Å3
259 parametersΔρmin = −0.36 e Å3
0 restraintsExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.065 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.43354 (11)0.47469 (5)0.69234 (9)0.0210 (2)
O20.62124 (10)0.35487 (5)0.44862 (9)0.0215 (2)
N10.81649 (13)0.45397 (6)0.87655 (10)0.0191 (2)
N20.81640 (14)0.44200 (6)1.09515 (11)0.0234 (3)
N30.73483 (13)0.39962 (6)0.55091 (11)0.0203 (2)
C10.75737 (16)0.47823 (7)0.97642 (13)0.0226 (3)
H10.680 (2)0.5192 (8)0.9590 (16)0.025 (4)*
C20.92279 (15)0.38916 (7)1.07227 (12)0.0196 (3)
C31.01939 (16)0.33471 (7)1.16205 (13)0.0229 (3)
H31.016 (2)0.3284 (9)1.2569 (17)0.034 (4)*
C41.11688 (16)0.28954 (7)1.11299 (14)0.0250 (3)
H41.185 (2)0.2500 (9)1.1699 (17)0.035 (4)*
C51.11963 (16)0.29780 (7)0.97705 (14)0.0249 (3)
H51.192 (2)0.2655 (9)0.9461 (16)0.033 (4)*
C61.02292 (16)0.35075 (7)0.88540 (13)0.0223 (3)
H61.0243 (19)0.3573 (8)0.7909 (16)0.026 (4)*
C70.92492 (15)0.39601 (6)0.93600 (12)0.0180 (3)
C80.77611 (17)0.48381 (7)0.73516 (13)0.0209 (3)
H810.8843 (18)0.4894 (8)0.7176 (14)0.018 (3)*
H820.7235 (19)0.5324 (8)0.7319 (15)0.021 (4)*
C90.65977 (15)0.43432 (6)0.62241 (12)0.0177 (3)
C100.48021 (15)0.42984 (6)0.60389 (12)0.0176 (3)
C110.34138 (16)0.39130 (7)0.52080 (13)0.0195 (3)
H110.3406 (18)0.3571 (8)0.4478 (15)0.024 (4)*
C120.20149 (17)0.41338 (7)0.55880 (14)0.0228 (3)
H120.081 (2)0.3957 (8)0.5195 (16)0.027 (4)*
C130.26348 (17)0.46348 (7)0.66207 (13)0.0233 (3)
H130.2152 (18)0.4915 (8)0.7179 (15)0.021 (3)*
C140.71245 (17)0.31673 (8)0.37379 (15)0.0269 (3)
H1410.813 (2)0.2925 (9)0.4441 (17)0.032 (4)*
H1420.749 (2)0.3531 (9)0.3176 (17)0.034 (4)*
C150.59066 (18)0.26057 (8)0.28123 (14)0.0278 (3)
H1510.650 (2)0.2349 (10)0.2257 (17)0.040 (4)*
H1520.493 (2)0.2866 (9)0.2113 (18)0.040 (5)*
C160.52829 (18)0.20602 (8)0.36374 (15)0.0287 (3)
H1610.624 (2)0.1794 (10)0.4348 (19)0.048 (5)*
H1620.468 (2)0.2317 (9)0.4205 (16)0.036 (4)*
H1630.449 (2)0.1687 (10)0.3015 (19)0.047 (5)*
U11U22U33U12U13U23
O10.0239 (5)0.0207 (4)0.0187 (4)0.0014 (3)0.0082 (4)−0.0027 (3)
O20.0178 (4)0.0252 (5)0.0212 (4)−0.0019 (3)0.0069 (4)−0.0078 (4)
N10.0206 (5)0.0191 (5)0.0163 (5)−0.0009 (4)0.0052 (4)−0.0009 (4)
N20.0248 (6)0.0258 (6)0.0187 (5)0.0015 (4)0.0066 (4)−0.0034 (4)
N30.0201 (5)0.0212 (5)0.0169 (5)−0.0026 (4)0.0036 (4)−0.0013 (4)
C10.0234 (6)0.0223 (6)0.0213 (6)0.0001 (5)0.0070 (5)−0.0053 (5)
C20.0179 (6)0.0221 (6)0.0173 (6)−0.0037 (5)0.0047 (5)−0.0036 (5)
C30.0202 (6)0.0275 (7)0.0185 (6)−0.0021 (5)0.0041 (5)0.0012 (5)
C40.0191 (6)0.0252 (7)0.0261 (7)0.0017 (5)0.0026 (5)0.0025 (5)
C50.0187 (6)0.0264 (7)0.0293 (7)0.0016 (5)0.0083 (5)−0.0036 (5)
C60.0200 (6)0.0266 (6)0.0212 (6)−0.0027 (5)0.0086 (5)−0.0022 (5)
C70.0155 (5)0.0188 (6)0.0178 (6)−0.0035 (4)0.0036 (5)−0.0016 (4)
C80.0238 (6)0.0200 (6)0.0165 (6)−0.0042 (5)0.0045 (5)0.0009 (5)
C90.0206 (6)0.0161 (6)0.0150 (6)−0.0009 (4)0.0050 (5)0.0029 (4)
C100.0229 (6)0.0157 (5)0.0146 (5)0.0013 (4)0.0074 (5)0.0010 (4)
C110.0219 (6)0.0185 (6)0.0181 (6)−0.0005 (5)0.0073 (5)−0.0001 (5)
C120.0216 (6)0.0240 (6)0.0237 (6)0.0010 (5)0.0093 (5)0.0018 (5)
C130.0235 (6)0.0257 (6)0.0235 (6)0.0045 (5)0.0116 (5)0.0020 (5)
C140.0212 (7)0.0350 (7)0.0277 (7)0.0011 (6)0.0128 (6)−0.0079 (6)
C150.0249 (7)0.0354 (8)0.0232 (6)0.0032 (6)0.0087 (6)−0.0095 (6)
C160.0258 (7)0.0267 (7)0.0305 (7)0.0041 (6)0.0067 (6)−0.0070 (6)
O1—C101.3787 (14)C6—H60.978 (15)
O1—C131.3652 (16)C8—H810.996 (14)
O2—N31.3952 (13)C8—H820.987 (15)
O2—C141.4447 (15)C9—C81.5105 (16)
N1—C11.3625 (16)C9—C101.4553 (16)
N1—C71.3847 (15)C11—C101.3635 (17)
N1—C81.4643 (15)C11—C121.4257 (17)
N2—C11.3110 (17)C11—H110.971 (15)
N2—C21.3927 (16)C12—H120.999 (16)
N3—C91.2927 (16)C13—C121.3499 (19)
C1—H10.963 (15)C13—H130.959 (15)
C2—C31.3956 (18)C14—H1410.994 (16)
C2—C71.4055 (17)C14—H1420.999 (17)
C3—H30.987 (16)C15—C141.5136 (19)
C4—C31.3800 (18)C15—C161.517 (2)
C4—C51.4066 (19)C15—H1510.999 (17)
C4—H40.973 (17)C15—H1520.994 (18)
C5—H50.982 (16)C16—H1610.993 (19)
C6—C51.3854 (18)C16—H1621.015 (17)
C6—C71.3933 (17)C16—H1631.001 (19)
C13—O1—C10106.73 (9)N3—C9—C10126.66 (11)
N3—O2—C14109.14 (9)N3—C9—C8114.21 (11)
C1—N1—C7106.35 (10)C10—C9—C8119.13 (10)
C1—N1—C8127.02 (11)C11—C10—O1109.32 (10)
C7—N1—C8126.62 (10)C11—C10—C9136.37 (11)
C1—N2—C2104.12 (10)O1—C10—C9114.31 (10)
C9—N3—O2111.61 (10)C10—C11—C12106.84 (11)
N1—C1—H1121.3 (9)C10—C11—H11125.1 (9)
N2—C1—N1114.29 (11)C12—C11—H11128.0 (9)
N2—C1—H1124.4 (9)C13—C12—C11106.40 (11)
N2—C2—C3129.71 (11)C13—C12—H12125.5 (9)
N2—C2—C7110.24 (11)C11—C12—H12128.1 (9)
C3—C2—C7120.05 (11)C12—C13—O1110.70 (11)
C4—C3—C2117.87 (11)C12—C13—H13134.4 (9)
C4—C3—H3121.4 (10)O1—C13—H13114.9 (9)
C2—C3—H3120.7 (10)O2—C14—C15106.74 (10)
C3—C4—C5121.40 (12)O2—C14—H142108.7 (9)
C3—C4—H4121.7 (9)C15—C14—H142111.9 (9)
C5—C4—H4116.9 (9)O2—C14—H141108.0 (9)
C6—C5—C4121.75 (12)C15—C14—H141110.9 (9)
C6—C5—H5118.9 (9)H142—C14—H141110.5 (13)
C4—C5—H5119.4 (9)C14—C15—C16112.93 (11)
C5—C6—C7116.36 (11)C14—C15—H151107.9 (10)
C5—C6—H6122.6 (9)C16—C15—H151110.7 (10)
C7—C6—H6121.1 (9)C14—C15—H152108.7 (10)
N1—C7—C6132.42 (11)C16—C15—H152110.5 (10)
N1—C7—C2105.01 (10)H151—C15—H152105.7 (13)
C6—C7—C2122.57 (11)C15—C16—H161112.0 (10)
N1—C8—C9112.58 (9)C15—C16—H162111.2 (9)
N1—C8—H81108.5 (8)H161—C16—H162104.4 (13)
C9—C8—H81107.8 (8)C15—C16—H163112.1 (10)
N1—C8—H82108.0 (8)H161—C16—H163107.8 (15)
C9—C8—H82110.7 (9)H162—C16—H163108.8 (14)
H81—C8—H82109.2 (12)
C13—O1—C10—C11−0.29 (13)N2—C2—C7—N1−0.36 (13)
C13—O1—C10—C9−179.60 (10)C3—C2—C7—N1179.63 (11)
C10—O1—C13—C120.20 (13)N2—C2—C7—C6179.04 (11)
C14—O2—N3—C9−179.10 (10)C3—C2—C7—C6−0.97 (18)
N3—O2—C14—C15171.16 (10)C5—C4—C3—C20.06 (19)
C7—N1—C1—N20.07 (15)C3—C4—C5—C6−1.0 (2)
C8—N1—C1—N2−179.00 (11)C7—C6—C5—C40.93 (18)
C1—N1—C7—C6−179.14 (13)C5—C6—C7—N1179.26 (12)
C8—N1—C7—C6−0.1 (2)C5—C6—C7—C20.05 (18)
C1—N1—C7—C20.18 (13)N3—C9—C8—N1−106.07 (12)
C8—N1—C7—C2179.25 (11)C10—C9—C8—N173.98 (14)
C1—N1—C8—C9−107.61 (14)N3—C9—C10—C112.8 (2)
C7—N1—C8—C973.51 (15)C8—C9—C10—C11−177.25 (13)
C2—N2—C1—N1−0.28 (14)N3—C9—C10—O1−178.13 (11)
C1—N2—C2—C3−179.59 (13)C8—C9—C10—O11.81 (15)
C1—N2—C2—C70.39 (13)C12—C11—C10—O10.26 (13)
O2—N3—C9—C10−0.07 (16)C12—C11—C10—C9179.35 (13)
O2—N3—C9—C8179.98 (9)C10—C11—C12—C13−0.13 (14)
N2—C2—C3—C4−179.13 (12)O1—C13—C12—C11−0.04 (14)
C7—C2—C3—C40.89 (18)C16—C15—C14—O2−59.43 (15)
D—H···AD—HH···AD···AD—H···A
C11—H11···O20.97 (2)2.359 (16)2.7930 (17)106 (1)
C13—H13···N2i0.96 (2)2.360 (15)3.2872 (17)162 (1)
C14—H141···Cg1ii0.99 (2)2.968 (17)3.8346 (16)146 (1)
C16—H161···Cg2ii0.99 (2)2.685 (18)3.5644 (16)148 (1)
C16—H163···Cg3ii1.00 (2)2.643 (18)3.5901 (15)157 (1)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11⋯O20.97 (2)2.359 (16)2.7930 (17)106 (1)
C13—H13⋯N2i0.96 (2)2.360 (15)3.2872 (17)162 (1)
C14—H141⋯Cg1ii0.99 (2)2.968 (17)3.8346 (16)146 (1)
C16—H161⋯Cg2ii0.99 (2)2.685 (18)3.5644 (16)148 (1)
C16—H163⋯Cg3ii1.00 (2)2.643 (18)3.5901 (15)157 (1)

Symmetry codes: (i) ; (ii) . Cg1, Cg2 and Cg3 are the centroids of the C2–C7, N1/N2/C1/C2/C7 and O1/C10–C13 rings, respectively.

  9 in total

1.  Stereoselective synthesis and antifungal activity of (Z)-trans-3-azolyl-2-methylchromanone oxime ethers.

Authors:  Saeed Emami; Mehraban Falahati; Ali Banifatemi; Abbas Shafiee
Journal:  Bioorg Med Chem       Date:  2004-11-15       Impact factor: 3.641

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, antifungal activity, and molecular modeling studies of new inverted oxime ethers of oxiconazole.

Authors:  Armando Rossello; Simone Bertini; Annalina Lapucci; Marco Macchia; Adriano Martinelli; Simona Rapposelli; Esperanza Herreros; Bruno Macchia
Journal:  J Med Chem       Date:  2002-10-24       Impact factor: 7.446

4.  Synthesis, stereochemistry, and antimicrobial evaluation of substituted piperidin-4-one oxime ethers.

Authors:  C Ramalingan; Y T Park; S Kabilan
Journal:  Eur J Med Chem       Date:  2006-04-04       Impact factor: 6.514

5.  Stereoselective synthesis and in vitro antifungal evaluation of (E)- and (Z)-imidazolylchromanone oxime ethers.

Authors:  Saeed Emami; Mehraban Falahati; Ali Banifatemi; Kayvan Moshiri; Abbas Shafiee
Journal:  Arch Pharm (Weinheim)       Date:  2002-07       Impact factor: 3.751

6.  Tetrahydronaphthyl azole oxime ethers: the conformationally rigid analogues of oxiconazole as antibacterials.

Authors:  Kalpana Bhandari; Nagarapu Srinivas; G B Shiva Keshava; Praveen K Shukla
Journal:  Eur J Med Chem       Date:  2008-01-25       Impact factor: 6.514

7.  Oxiconazole, a new imidazole derivative. Evaluation of antifungal activity in vitro and in vivo.

Authors:  A Polak
Journal:  Arzneimittelforschung       Date:  1982

8.  Oxime and oxime ether derivatives of 1,4-benzothiazine related to oxiconazole.

Authors:  Lara Milanese; Nicola Giacchè; Fausto Schiaffella; Anna Vecchiarelli; Antonio Macchiarulo; Renata Fringuelli
Journal:  ChemMedChem       Date:  2007-08       Impact factor: 3.466

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total
  2 in total

1.  2-(1H-Benzimidazol-1-yl)-1-(2-fur-yl)ethanone O-isopropyl-oxime.

Authors:  Ozden Ozel Güven; Taner Erdoğan; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-17

2.  2-(1H-Benzimidazol-1-yl)-1-(2-fur-yl)ethanone O-ethyl-oxime.

Authors:  Ozden Ozel Güven; Taner Erdoğan; M Nawaz Tahir; Tuncer Hökelek
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-20
  2 in total

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