Literature DB >> 21582890

2-(1H-Benzimidazol-1-yl)-1-(2-fur-yl)ethanone O-ethyl-oxime.

Ozden Ozel Güven, Taner Erdoğan, M Nawaz Tahir, Tuncer Hökelek.   

Abstract

In the mol-ecule of the title compound, C(15)H(15)N(3)O(2), the planar benzimidazole ring system [maximum deviation = 0.023 (2) Å] is oriented at a dihedral angle of 74.21 (5)° with respect to the furan ring. In the crystal structure, inter-molecular C-H⋯N inter-actions link the mol-ecules into centrosymmetric R(2) (2)(18) dimers. In addition, the structure is stabilized by π-π contacts between parallel imidazole rings [centroid-centroid distance = 3.726 (1) Å] and a weak C-H⋯π inter-action.

Entities:  

Year:  2009        PMID: 21582890      PMCID: PMC2969343          DOI: 10.1107/S1600536809022892

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to oximes and oxime ethers and their biological activity, see: Baji et al. (1995 ▶); Bhandari et al. (2009 ▶); Emami et al. (2002 ▶, 2004 ▶); Milanese et al. (2007 ▶); Polak (1982 ▶); Porretta et al. (1993 ▶); Ramalingan et al. (2006 ▶); Rossello et al. (2002 ▶). For related structures, see: Özel Güven et al. (2007a ▶,b ▶, 2009a ▶,b ▶). For ring-motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C15H15N3O2 M = 269.30 Monoclinic, a = 8.4448 (5) Å b = 17.6345 (11) Å c = 10.3147 (6) Å β = 110.755 (2)° V = 1436.38 (15) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.40 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.967, T max = 0.979 16676 measured reflections 3742 independent reflections 2291 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.140 S = 1.03 3742 reflections 182 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809022892/xu2539sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809022892/xu2539Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H15N3O2F(000) = 568
Mr = 269.30Dx = 1.245 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1232 reflections
a = 8.4448 (5) Åθ = 2.3–28.8°
b = 17.6345 (11) ŵ = 0.09 mm1
c = 10.3147 (6) ÅT = 296 K
β = 110.755 (2)°Block, yellow
V = 1436.38 (15) Å30.40 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3742 independent reflections
Radiation source: fine-focus sealed tube2291 reflections with I > 2σ(I)
graphiteRint = 0.027
ω scansθmax = 28.8°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→7
Tmin = 0.967, Tmax = 0.979k = −23→19
16676 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0597P)2 + 0.249P] where P = (Fo2 + 2Fc2)/3
3742 reflections(Δ/σ)max < 0.001
182 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.07624 (14)0.47405 (6)0.69126 (11)0.0587 (3)
O20.12331 (14)0.34870 (6)0.45867 (12)0.0620 (3)
N10.30309 (17)0.45287 (7)0.87568 (13)0.0525 (3)
N20.2926 (2)0.43475 (9)1.08660 (15)0.0735 (5)
N30.23041 (17)0.39663 (8)0.55862 (13)0.0544 (3)
C10.2331 (2)0.47207 (11)0.97034 (18)0.0672 (5)
H10.14940.50890.95380.081*
C20.4123 (2)0.38660 (10)1.06784 (16)0.0561 (4)
C30.5178 (2)0.33399 (11)1.15764 (18)0.0691 (5)
H30.51260.32571.24510.083*
C40.6289 (3)0.29490 (12)1.1144 (2)0.0752 (5)
H40.70020.25941.17320.090*
C50.6378 (2)0.30710 (12)0.9839 (2)0.0756 (5)
H50.71680.28020.95830.091*
C60.5329 (2)0.35802 (10)0.89142 (19)0.0629 (4)
H60.53730.36550.80350.076*
C70.42077 (19)0.39732 (8)0.93684 (15)0.0489 (4)
C80.2629 (2)0.48404 (9)0.73688 (16)0.0545 (4)
H8A0.36720.49310.72000.065*
H8B0.20600.53240.73130.065*
C90.15179 (19)0.43200 (8)0.62662 (14)0.0461 (3)
C10−0.02592 (19)0.42668 (8)0.60758 (15)0.0460 (3)
C11−0.1609 (2)0.38634 (9)0.52731 (17)0.0564 (4)
H11−0.16160.35010.46160.068*
C12−0.3007 (2)0.40962 (11)0.5621 (2)0.0674 (5)
H12−0.41120.39180.52370.081*
C13−0.2438 (2)0.46193 (11)0.6602 (2)0.0679 (5)
H13−0.31020.48690.70200.081*
C140.2185 (2)0.31439 (13)0.3830 (2)0.0813 (6)
H14A0.31350.28630.44600.098*
H14B0.26250.35340.33860.098*
C150.1095 (3)0.26391 (19)0.2798 (3)0.1340 (12)
H15A0.17420.23820.23310.201*
H15B0.02060.29260.21360.201*
H15C0.06100.22730.32380.201*
U11U22U33U12U13U23
O10.0639 (7)0.0630 (7)0.0511 (6)0.0017 (5)0.0226 (5)−0.0089 (5)
O20.0581 (7)0.0677 (7)0.0577 (7)0.0012 (6)0.0173 (5)−0.0193 (6)
N10.0589 (8)0.0543 (7)0.0408 (7)−0.0030 (6)0.0136 (6)−0.0069 (6)
N20.0865 (11)0.0894 (11)0.0453 (8)0.0104 (9)0.0241 (8)−0.0082 (8)
N30.0554 (7)0.0591 (8)0.0453 (7)−0.0013 (6)0.0136 (6)−0.0042 (6)
C10.0761 (12)0.0722 (11)0.0518 (10)0.0112 (9)0.0210 (9)−0.0116 (9)
C20.0597 (9)0.0634 (10)0.0400 (8)−0.0069 (8)0.0112 (7)−0.0092 (7)
C30.0748 (12)0.0795 (12)0.0429 (9)−0.0053 (10)0.0083 (8)0.0017 (8)
C40.0676 (11)0.0768 (12)0.0647 (12)0.0044 (10)0.0029 (10)0.0055 (10)
C50.0636 (11)0.0796 (13)0.0809 (14)0.0112 (10)0.0222 (10)−0.0037 (11)
C60.0611 (10)0.0722 (11)0.0578 (10)−0.0017 (9)0.0239 (8)−0.0043 (9)
C70.0477 (8)0.0516 (8)0.0420 (8)−0.0091 (7)0.0094 (6)−0.0069 (6)
C80.0619 (10)0.0515 (9)0.0470 (9)−0.0101 (7)0.0153 (7)−0.0003 (7)
C90.0551 (9)0.0438 (7)0.0374 (8)−0.0002 (6)0.0141 (6)0.0044 (6)
C100.0577 (9)0.0420 (7)0.0389 (8)0.0011 (6)0.0180 (6)0.0014 (6)
C110.0615 (10)0.0527 (9)0.0552 (9)−0.0061 (7)0.0210 (8)−0.0052 (7)
C120.0580 (10)0.0751 (11)0.0709 (12)−0.0095 (9)0.0252 (9)−0.0033 (10)
C130.0632 (11)0.0810 (12)0.0684 (12)0.0060 (9)0.0342 (9)0.0004 (10)
C140.0680 (12)0.0984 (15)0.0776 (13)0.0098 (11)0.0257 (10)−0.0302 (12)
C150.0854 (16)0.165 (3)0.138 (2)0.0083 (17)0.0234 (16)−0.097 (2)
O1—C101.3723 (17)C7—C61.382 (2)
O1—C131.352 (2)C8—H8A0.9700
O2—N31.3909 (16)C8—H8B0.9700
O2—C141.438 (2)C9—N31.285 (2)
N1—C11.351 (2)C9—C81.503 (2)
N1—C71.379 (2)C9—C101.446 (2)
N1—C81.457 (2)C10—C111.350 (2)
N2—C11.303 (2)C11—C121.411 (2)
C1—H10.9300C11—H110.9300
C2—N21.385 (2)C12—H120.9300
C2—C31.388 (2)C13—C121.328 (3)
C3—C41.361 (3)C13—H130.9300
C3—H30.9300C14—C151.442 (3)
C4—H40.9300C14—H14A0.9700
C5—C41.391 (3)C14—H14B0.9700
C5—H50.9300C15—H15A0.9600
C6—C51.379 (3)C15—H15B0.9600
C6—H60.9300C15—H15C0.9600
C7—C21.391 (2)
C13—O1—C10106.63 (13)C9—C8—H8A109.2
N3—O2—C14108.44 (12)C9—C8—H8B109.2
C1—N1—C7106.03 (13)H8A—C8—H8B107.9
C1—N1—C8127.31 (15)N3—C9—C8113.87 (14)
C7—N1—C8126.65 (13)N3—C9—C10127.33 (14)
C1—N2—C2104.09 (14)C10—C9—C8118.81 (13)
C9—N3—O2111.93 (13)O1—C10—C9114.39 (13)
N1—C1—H1122.8C11—C10—O1108.92 (13)
N2—C1—N1114.46 (16)C11—C10—C9136.69 (14)
N2—C1—H1122.8C10—C11—C12106.94 (15)
N2—C2—C3130.09 (16)C10—C11—H11126.5
N2—C2—C7110.10 (15)C12—C11—H11126.5
C3—C2—C7119.80 (16)C11—C12—H12126.7
C2—C3—H3120.9C13—C12—C11106.65 (16)
C4—C3—C2118.29 (17)C13—C12—H12126.7
C4—C3—H3120.9O1—C13—H13124.6
C3—C4—C5121.26 (18)C12—C13—O1110.85 (16)
C3—C4—H4119.4C12—C13—H13124.6
C5—C4—H4119.4O2—C14—C15109.09 (17)
C4—C5—H5119.1O2—C14—H14A109.9
C6—C5—C4121.86 (18)O2—C14—H14B109.9
C6—C5—H5119.1C15—C14—H14A109.9
C5—C6—C7116.19 (17)C15—C14—H14B109.9
C5—C6—H6121.9H14A—C14—H14B108.3
C7—C6—H6121.9C14—C15—H15A109.5
N1—C7—C6132.10 (15)C14—C15—H15B109.5
N1—C7—C2105.31 (14)C14—C15—H15C109.5
C6—C7—C2122.57 (15)H15A—C15—H15B109.5
N1—C8—C9112.26 (12)H15A—C15—H15C109.5
N1—C8—H8A109.2H15B—C15—H15C109.5
N1—C8—H8B109.2
C13—O1—C10—C9179.95 (13)C7—C6—C5—C41.3 (3)
C13—O1—C10—C11−0.15 (17)N1—C7—C2—N2−0.25 (18)
C10—O1—C13—C120.1 (2)N1—C7—C2—C3−179.41 (14)
C14—O2—N3—C9177.14 (15)C6—C7—C2—N2178.33 (15)
N3—O2—C14—C15179.4 (2)C6—C7—C2—C3−0.8 (2)
C7—N1—C1—N2−0.1 (2)N1—C7—C6—C5177.93 (16)
C8—N1—C1—N2179.70 (15)C2—C7—C6—C5−0.2 (2)
C1—N1—C7—C20.23 (17)C8—C9—N3—O2179.48 (11)
C1—N1—C7—C6−178.15 (17)C10—C9—N3—O2−0.6 (2)
C8—N1—C7—C2−179.61 (14)N3—C9—C8—N1−104.67 (16)
C8—N1—C7—C62.0 (3)C10—C9—C8—N175.41 (17)
C1—N1—C8—C9−102.12 (19)N3—C9—C10—O1−177.03 (14)
C7—N1—C8—C977.69 (19)N3—C9—C10—C113.1 (3)
C2—N2—C1—N10.0 (2)C8—C9—C10—O12.88 (18)
C3—C2—N2—C1179.21 (18)C8—C9—C10—C11−176.98 (17)
C7—C2—N2—C10.16 (19)O1—C10—C11—C120.16 (18)
N2—C2—C3—C4−178.13 (18)C9—C10—C11—C12−179.97 (17)
C7—C2—C3—C40.8 (3)C10—C11—C12—C13−0.1 (2)
C2—C3—C4—C50.2 (3)O1—C13—C12—C110.0 (2)
C6—C5—C4—C3−1.3 (3)
D—H···AD—HH···AD···AD—H···A
C13—H13···N2i0.932.543.328 (2)143
C14—H14A···Cg2ii0.972.883.768 (2)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13⋯N2i0.932.543.328 (2)143
C14—H14ACg2ii0.972.883.768 (2)153

Symmetry codes: (i) ; (ii) .Cg2 is the centroid of the C2–C7 ring.

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