Literature DB >> 21582742

trans-Diaqua-bis[5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ido-κN,O]iron(II).

Xia Li, Wei Liu, Ben-Lai Wu, Hong-Yun Zhang.   

Abstract

In the title complex, [Fe(C(10)n class="Species">H(6)N(3)O(4))(2)(H(2)O)(2)], the Fe(II) atom is located on a twofold rotation axis and is coordinated by two trans-positioned N,O-bidentate and zwitterionic 5-carboxy-2-(pyridinium-4-yl)-1H-imidazol-1-ide-4-carboxylate H(2)PIDC(-) ligands and two water mol-ecules in a distorted environment. In the crystal packing, a three-dimensional network is constructed via hydrogen-bonding involving the water mol-ecules, uncoordinated imidazole N atom, protonated pyridine N and carboxyl-ate O atoms.

Entities:  

Year:  2009        PMID: 21582742      PMCID: PMC2969200          DOI: 10.1107/S160053680902337X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of the multifunctional connector 4,5-imidazole­dicarboxylic acid (n class="Chemical">H3IDC) in coordination chemistry, see: Liu et al. (2004 ▶); Maji et al. (2005 ▶); Plieger et al. (2005 ▶); Rajendiran et al. (2003 ▶); Zou et al. (2005 ▶). For the preparation of 2-(pyridin-4-yl)-1H-imidazole-4,5-dicarboxylic acid, see: Sun et al. (2006 ▶).

Experimental

Crystal data

[Fe(C10n class="Species">H6N3O4)2(H2O)2] M = 556.24 Monoclinic, a = 21.344 (4) Å b = 7.3900 (15) Å c = 13.768 (3) Å β = 104.70 (3)° V = 2100.6 (7) Å3 Z = 4 Mo Kα radiation μ = 0.80 mm−1 T = 173 K 0.25 × 0.15 × 0.12 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2000 ▶) T min = 0.870, T max = 0.921 8952 measured reflections 2386 independent reflections 2083 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.079 S = 1.04 2386 reflections 175 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.37 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CrystalClear (Rigaku, 2000 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680902337X/kp2221sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680902337X/kp2221Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Fe(C10H6N3O4)2(H2O)2]F(000) = 1136
Mr = 556.24Dx = 1.759 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 21.344 (4) Åθ = 2.9–28.3°
b = 7.3900 (15) ŵ = 0.80 mm1
c = 13.768 (3) ÅT = 173 K
β = 104.70 (3)°Block, red
V = 2100.6 (7) Å30.25 × 0.15 × 0.12 mm
Z = 4
Mercury CCD diffractometer2386 independent reflections
Radiation source: fine-focus sealed tube2083 reflections with I > 2σ(I)
graphiteRint = 0.021
ω scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000)h = −27→27
Tmin = 0.870, Tmax = 0.921k = −9→9
8952 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0388P)2 + 2.1264P] where P = (Fo2 + 2Fc2)/3
2386 reflections(Δ/σ)max < 0.001
175 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Fe10.00000.19391 (5)0.25000.02067 (11)
O1−0.10126 (6)0.20613 (19)0.22910 (9)0.0309 (3)
O2−0.17764 (6)0.3056 (2)0.29923 (10)0.0391 (4)
O3−0.18924 (6)0.3890 (2)0.46949 (10)0.0406 (4)
H3B−0.18670.37540.39940.061*
O4−0.12932 (7)0.3875 (2)0.62503 (10)0.0452 (4)
O60.0000−0.0877 (3)0.25000.0352 (5)
N1−0.00912 (6)0.21688 (19)0.40741 (10)0.0203 (3)
N2−0.01854 (7)0.2842 (2)0.56415 (10)0.0236 (3)
N30.21933 (7)0.1542 (2)0.63905 (12)0.0341 (4)
H30.26080.13970.66770.051*
C10.19580 (9)0.1005 (3)0.54346 (14)0.0334 (4)
H10.22370.04640.50790.040*
C20.18128 (9)0.2296 (3)0.69186 (14)0.0360 (5)
H20.19940.26530.75950.043*
C30.11686 (9)0.2556 (3)0.64969 (13)0.0308 (4)
H3A0.09030.30920.68770.037*
C40.13117 (8)0.1242 (3)0.49733 (13)0.0281 (4)
H40.11440.08710.42960.034*
C50.09009 (8)0.2030 (2)0.55010 (12)0.0220 (3)
C60.02077 (8)0.2333 (2)0.50603 (12)0.0210 (3)
C7−0.07755 (8)0.3048 (2)0.49880 (12)0.0215 (3)
C8−0.13379 (8)0.3626 (3)0.53665 (13)0.0272 (4)
C9−0.07183 (7)0.2631 (2)0.40239 (12)0.0205 (3)
C10−0.11994 (8)0.2578 (2)0.30365 (12)0.0244 (4)
O70.00000.4810 (3)0.25000.0340 (4)
H6−0.0101 (12)−0.153 (3)0.1969 (18)0.051*
H70.0223 (11)0.530 (4)0.2972 (17)0.051*
U11U22U33U12U13U23
Fe10.01809 (17)0.0276 (2)0.01644 (17)0.0000.00460 (12)0.000
O10.0218 (6)0.0513 (8)0.0176 (6)−0.0004 (6)0.0017 (5)−0.0067 (5)
O20.0155 (6)0.0730 (11)0.0251 (7)0.0076 (6)−0.0012 (5)−0.0053 (6)
O30.0198 (6)0.0712 (10)0.0312 (7)0.0084 (6)0.0071 (5)−0.0069 (7)
O40.0391 (8)0.0752 (11)0.0249 (7)0.0073 (8)0.0144 (6)−0.0062 (7)
O60.0571 (13)0.0273 (10)0.0212 (9)0.0000.0096 (9)0.000
N10.0154 (6)0.0279 (7)0.0162 (6)0.0011 (5)0.0016 (5)0.0006 (5)
N20.0188 (7)0.0338 (8)0.0170 (7)−0.0013 (6)0.0023 (5)0.0005 (6)
N30.0156 (7)0.0524 (10)0.0296 (8)0.0029 (7)−0.0026 (6)0.0055 (7)
C10.0236 (9)0.0457 (11)0.0315 (10)0.0055 (8)0.0079 (7)0.0021 (8)
C20.0238 (9)0.0558 (13)0.0231 (9)−0.0022 (8)−0.0038 (7)−0.0021 (8)
C30.0217 (9)0.0473 (11)0.0215 (9)−0.0002 (8)0.0022 (7)−0.0035 (8)
C40.0224 (8)0.0391 (10)0.0212 (8)0.0019 (7)0.0025 (7)0.0008 (7)
C50.0173 (8)0.0277 (9)0.0190 (8)−0.0009 (6)0.0013 (6)0.0039 (6)
C60.0179 (8)0.0274 (8)0.0161 (7)−0.0003 (6)0.0015 (6)0.0017 (6)
C70.0179 (7)0.0285 (9)0.0177 (7)−0.0015 (6)0.0035 (6)−0.0004 (6)
C80.0230 (8)0.0360 (10)0.0235 (8)−0.0004 (7)0.0080 (7)−0.0019 (7)
C90.0151 (7)0.0280 (8)0.0174 (8)0.0003 (6)0.0020 (6)0.0005 (6)
C100.0173 (8)0.0347 (9)0.0189 (8)−0.0013 (7)0.0004 (6)−0.0005 (7)
O70.0447 (12)0.0303 (10)0.0206 (9)0.000−0.0033 (8)0.000
Fe1—O62.081 (2)N3—C21.341 (3)
Fe1—O12.1087 (13)N3—C11.344 (2)
Fe1—O1i2.1087 (13)N3—H30.8793
Fe1—O72.121 (2)C1—C41.376 (2)
Fe1—N12.2311 (14)C1—H10.9500
Fe1—N1i2.2311 (14)C2—C31.364 (3)
O1—C101.251 (2)C2—H20.9500
O2—C101.268 (2)C3—C51.400 (2)
O3—C81.318 (2)C3—H3A0.9500
O3—H3B0.9857C4—C51.399 (2)
O4—C81.210 (2)C4—H40.9500
O6—H60.86 (2)C5—C61.467 (2)
N1—C61.351 (2)C7—C91.398 (2)
N1—C91.366 (2)C7—C81.488 (2)
N2—C61.352 (2)C9—C101.482 (2)
N2—C71.358 (2)O7—H70.79 (2)
O6—Fe1—O192.45 (4)N3—C2—C3120.77 (17)
O6—Fe1—O1i92.45 (4)N3—C2—H2119.6
O1—Fe1—O1i175.09 (8)C3—C2—H2119.6
O6—Fe1—O7180.0C2—C3—C5119.65 (18)
O1—Fe1—O787.55 (4)C2—C3—H3A120.2
O1i—Fe1—O787.55 (4)C5—C3—H3A120.2
O6—Fe1—N194.36 (4)C1—C4—C5120.01 (16)
O1—Fe1—N177.89 (5)C1—C4—H4120.0
O1i—Fe1—N1101.73 (6)C5—C4—H4120.0
O7—Fe1—N185.64 (4)C4—C5—C3118.05 (15)
O6—Fe1—N1i94.36 (4)C4—C5—C6123.22 (15)
O1—Fe1—N1i101.73 (6)C3—C5—C6118.73 (15)
O1i—Fe1—N1i77.89 (5)N1—C6—N2114.46 (14)
O7—Fe1—N1i85.64 (4)N1—C6—C5124.85 (15)
N1—Fe1—N1i171.27 (7)N2—C6—C5120.68 (14)
C10—O1—Fe1115.47 (11)N2—C7—C9108.34 (14)
C8—O3—H3B114.1N2—C7—C8119.69 (14)
Fe1—O6—H6124.1 (17)C9—C7—C8131.97 (15)
C6—N1—C9103.60 (13)O4—C8—O3120.70 (17)
C6—N1—Fe1147.96 (11)O4—C8—C7122.08 (16)
C9—N1—Fe1107.20 (10)O3—C8—C7117.21 (15)
C6—N2—C7104.46 (13)N1—C9—C7109.12 (14)
C2—N3—C1121.75 (16)N1—C9—C10118.80 (14)
C2—N3—H3119.1C7—C9—C10132.06 (15)
C1—N3—H3119.2O1—C10—O2123.61 (15)
N3—C1—C4119.76 (17)O1—C10—C9118.02 (15)
N3—C1—H1120.1O2—C10—C9118.37 (15)
C4—C1—H1120.1Fe1—O7—H7117.2 (19)
O6—Fe1—O1—C10108.54 (13)C7—N2—C6—N1−0.9 (2)
O1i—Fe1—O1—C10−71.46 (13)C7—N2—C6—C5178.14 (15)
O7—Fe1—O1—C10−71.46 (13)C4—C5—C6—N1−11.1 (3)
N1—Fe1—O1—C1014.60 (13)C3—C5—C6—N1168.70 (17)
N1i—Fe1—O1—C10−156.48 (13)C4—C5—C6—N2169.95 (17)
O6—Fe1—N1—C692.7 (2)C3—C5—C6—N2−10.3 (3)
O1—Fe1—N1—C6−175.7 (2)C6—N2—C7—C90.63 (19)
O1i—Fe1—N1—C6−0.7 (2)C6—N2—C7—C8−179.49 (16)
O7—Fe1—N1—C6−87.3 (2)N2—C7—C8—O4−2.2 (3)
N1i—Fe1—N1—C6−87.3 (2)C9—C7—C8—O4177.7 (2)
O6—Fe1—N1—C9−103.82 (10)N2—C7—C8—O3176.82 (16)
O1—Fe1—N1—C9−12.24 (11)C9—C7—C8—O3−3.3 (3)
O1i—Fe1—N1—C9162.76 (11)C6—N1—C9—C7−0.38 (18)
O7—Fe1—N1—C976.18 (10)Fe1—N1—C9—C7−171.43 (11)
N1i—Fe1—N1—C976.18 (10)C6—N1—C9—C10−179.12 (15)
C2—N3—C1—C40.6 (3)Fe1—N1—C9—C109.83 (18)
C1—N3—C2—C3−0.4 (3)N2—C7—C9—N1−0.2 (2)
N3—C2—C3—C50.0 (3)C8—C7—C9—N1179.98 (17)
N3—C1—C4—C5−0.4 (3)N2—C7—C9—C10178.35 (17)
C1—C4—C5—C30.0 (3)C8—C7—C9—C10−1.5 (3)
C1—C4—C5—C6179.77 (17)Fe1—O1—C10—O2166.15 (15)
C2—C3—C5—C40.2 (3)Fe1—O1—C10—C9−13.9 (2)
C2—C3—C5—C6−179.60 (18)N1—C9—C10—O11.9 (2)
C9—N1—C6—N20.84 (19)C7—C9—C10—O1−176.46 (18)
Fe1—N1—C6—N2164.57 (16)N1—C9—C10—O2−178.12 (16)
C9—N1—C6—C5−178.20 (16)C7—C9—C10—O23.5 (3)
Fe1—N1—C6—C5−14.5 (3)
D—H···AD—HH···AD···AD—H···A
O6—H6···N2ii0.86 (2)2.04 (2)2.8806 (18)169 (3)
N3—H3···O2iii0.881.992.707 (2)138
O3—H3B···O20.991.532.4959 (19)166
Table 1

Selected bond lengths (Å)

Fe1—O62.081 (2)
Fe1—O12.1087 (13)
Fe1—O72.121 (2)
Fe1—N12.2311 (14)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6⋯N2i0.86 (2)2.04 (2)2.8806 (18)169 (3)
N3—H3⋯O2ii0.881.992.707 (2)138
O3—H3B⋯O20.991.532.4959 (19)166

Symmetry codes: (i) ; (ii) .

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4.  A short history of SHELX.

Authors:  George M Sheldrick
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5.  Novel binding of beryllium to dicarboxyimidazole-based model compounds and polymers.

Authors:  Paul G Plieger; Deborah S Ehler; Brandy L Duran; Tammy P Taylor; Kevin D John; Timothy S Keizer; T Mark McCleskey; Anthony K Burrell; Jeffrey W Kampf; Thomas Haase; Paul G Rasmussen; Jennifer Karr
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6.  Isolation of the first ferromagnetically coupled Mn(III/IV) complex.

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  6 in total
  3 in total

1.  trans-Diaqua-bis-[5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ido-κN,O]zinc(II).

Authors:  Xia Li; Ling-Zhi Du; Ben-Lai Wu; Hong-Yun Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28

2.  Zwitterionic 4-carb-oxy-2-(1-methyl-pyridin-1-ium-4-yl)-1H-imidazole-5-carboxyl-ate.

Authors:  Dao-Sen Liu; Jun-Guo Fang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

3.  trans-Diaqua-bis-[4-carboxy-5-carboxyl-ato-2-(pyridin-1-ium-4-yl)-1H-imidazol-1-ido-κN,O]cobalt(II).

Authors:  Lin Sun; Yu Hua Huang; Ting Ting Chen; Hong Deng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-17
  3 in total

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