Literature DB >> 22058867

trans-Diaqua-bis-[4-carboxy-5-carboxyl-ato-2-(pyridin-1-ium-4-yl)-1H-imidazol-1-ido-κN,O]cobalt(II).

Lin Sun1, Yu Hua Huang, Ting Ting Chen, Hong Deng.   

Abstract

In the title compound, [n class="Chemical">Co(C(10)H(6)N(3)O(4))(2)(H(2)O)(2)], the Co(II) ion is coordinated by two O atoms of two water mol-ecules, two imidazole nitro-gen atoms and two carboxyl-ate O atoms of the two trans-standing chelate ligands, displaying a distorted octa-hedral coordination geometry. A three-dimensional supra-molecular framework is generated through N-H⋯O, O-H⋯N and O-H⋯O hydrogen-bonding inter-actions.

Entities:  

Year:  2011        PMID: 22058867      PMCID: PMC3200914          DOI: 10.1107/S1600536811032545

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the chemistry of N-heterocyclic carb­oxy­lic acids, see: Peng et al. (2010 ▶); Liu et al. (2005 ▶). For the applications of 2-(pyridine-4-yl)-1H-4,5-n class="Chemical">imidazole­dicarb­oxy­lic acid, see: Li, Liu et al. (2009 ▶); Sun et al. (2006 ▶); Li, Wu et al. (2009 ▶); Chen et al. (2010 ▶).

Experimental

Crystal data

[Co(C10n class="Species">H6N3O4)2(H2O)2] M = 559.32 Monoclinic, a = 7.4146 (17) Å b = 20.190 (5) Å c = 13.361 (3) Å β = 97.383 (3)° V = 1983.6 (8) Å3 Z = 4 Mo Kα radiation μ = 0.95 mm−1 T = 296 K 0.27 × 0.26 × 0.24 mm

Data collection

Bruker AXS SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.775, T max = 0.797 4997 measured reflections 1775 independent reflections 1480 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.088 S = 1.01 1775 reflections 181 parameters 3 restraints H atoms treated by a mixture of independent and n class="Chemical">constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.43 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811032545/bt5574sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811032545/bt5574Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C10H6N3O4)2(H2O)2]F(000) = 1140
Mr = 559.32Dx = 1.873 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 1775 reflections
a = 7.4146 (17) Åθ = 2.5–25.5°
b = 20.190 (5) ŵ = 0.95 mm1
c = 13.361 (3) ÅT = 296 K
β = 97.383 (3)°Block, brown
V = 1983.6 (8) Å30.27 × 0.26 × 0.24 mm
Z = 4
Bruker AXS SMART APEX CCD diffractometer1775 independent reflections
Radiation source: fine-focus sealed tube1480 reflections with I > 2σ(I)
graphiteRint = 0.032
ω scansθmax = 25.2°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→8
Tmin = 0.775, Tmax = 0.797k = −17→24
4997 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.034P)2 + 5.2791P] where P = (Fo2 + 2Fc2)/3
1775 reflections(Δ/σ)max = 0.021
181 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9792 (4)0.32925 (12)0.57368 (19)0.0187 (6)
C20.8527 (4)0.34198 (12)0.63981 (19)0.0193 (6)
C30.8791 (3)0.23737 (12)0.62348 (19)0.0178 (5)
C40.8456 (3)0.16716 (13)0.63859 (19)0.0193 (6)
C50.9082 (4)0.11718 (14)0.5791 (2)0.0257 (6)
H50.96950.12790.52480.031*
C60.8781 (4)0.05252 (15)0.6016 (2)0.0332 (7)
H60.91760.01930.56130.040*
C70.7298 (4)0.08204 (14)0.7376 (2)0.0282 (7)
H70.67020.06950.79180.034*
C80.7511 (4)0.14764 (13)0.7177 (2)0.0254 (6)
H80.70260.17950.75690.031*
C91.0837 (4)0.37354 (13)0.5147 (2)0.0234 (6)
C100.7965 (4)0.40581 (13)0.6804 (2)0.0240 (6)
Co11.25000.25000.50000.02030 (17)
N10.9989 (3)0.26264 (10)0.56502 (16)0.0176 (5)
N20.7881 (3)0.28357 (10)0.67008 (16)0.0203 (5)
N30.7934 (3)0.03578 (12)0.68026 (19)0.0290 (6)
H30.779 (4)−0.0073 (16)0.697 (2)0.035*
O11.1926 (3)0.34767 (9)0.46237 (15)0.0295 (5)
O21.0579 (3)0.43564 (9)0.51720 (17)0.0358 (5)
O30.8438 (3)0.45907 (9)0.63801 (17)0.0376 (6)
O40.7109 (3)0.40657 (10)0.75400 (16)0.0330 (5)
O1W1.1046 (3)0.21633 (13)0.36503 (16)0.0390 (6)
H1WA0.990 (2)0.2183 (19)0.356 (3)0.058*
H1WB1.139 (4)0.1901 (16)0.326 (2)0.058*
H3A0.940 (5)0.4481 (18)0.574 (3)0.058*
U11U22U33U12U13U23
C10.0225 (14)0.0126 (13)0.0219 (14)0.0016 (11)0.0061 (11)0.0013 (10)
C20.0237 (14)0.0142 (13)0.0208 (14)0.0007 (10)0.0061 (11)0.0008 (10)
C30.0203 (13)0.0141 (13)0.0197 (13)−0.0001 (10)0.0048 (10)0.0018 (10)
C40.0196 (14)0.0175 (14)0.0207 (14)−0.0002 (11)0.0019 (10)0.0022 (11)
C50.0315 (15)0.0212 (15)0.0262 (15)−0.0021 (12)0.0106 (12)0.0008 (11)
C60.0450 (18)0.0211 (15)0.0357 (18)−0.0007 (13)0.0136 (14)−0.0048 (13)
C70.0337 (17)0.0229 (15)0.0304 (16)−0.0024 (12)0.0127 (13)0.0049 (12)
C80.0307 (15)0.0193 (14)0.0285 (15)0.0002 (12)0.0124 (12)0.0002 (12)
C90.0269 (15)0.0187 (14)0.0259 (15)0.0008 (11)0.0081 (12)0.0029 (11)
C100.0260 (15)0.0192 (14)0.0280 (16)0.0015 (12)0.0076 (12)−0.0032 (11)
Co10.0246 (3)0.0161 (3)0.0218 (3)0.0021 (2)0.0090 (2)0.0006 (2)
N10.0215 (11)0.0137 (11)0.0187 (11)0.0008 (9)0.0065 (9)0.0009 (8)
N20.0229 (12)0.0159 (11)0.0235 (12)0.0006 (9)0.0079 (9)0.0007 (9)
N30.0361 (14)0.0144 (12)0.0375 (15)−0.0041 (11)0.0083 (11)0.0038 (11)
O10.0361 (12)0.0200 (10)0.0365 (12)0.0046 (9)0.0201 (9)0.0075 (9)
O20.0500 (14)0.0132 (10)0.0498 (14)0.0029 (9)0.0275 (11)0.0058 (9)
O30.0600 (15)0.0148 (10)0.0439 (13)0.0026 (10)0.0285 (11)−0.0002 (9)
O40.0425 (13)0.0223 (11)0.0383 (12)0.0023 (9)0.0211 (10)−0.0056 (9)
O1W0.0258 (11)0.0621 (17)0.0296 (12)0.0044 (11)0.0056 (10)−0.0179 (11)
C1—N11.359 (3)C8—H80.9300
C1—C21.393 (4)C9—O11.248 (3)
C1—C91.475 (4)C9—O21.269 (3)
C2—N21.354 (3)C10—O41.237 (3)
C2—C101.479 (4)C10—O31.285 (3)
C3—N21.350 (3)Co1—O1i2.0659 (19)
C3—N11.355 (3)Co1—O12.0659 (19)
C3—C41.458 (3)Co1—O1Wi2.092 (2)
C4—C81.398 (4)Co1—O1W2.092 (2)
C4—C51.400 (4)Co1—N1i2.169 (2)
C5—C61.365 (4)Co1—N12.169 (2)
C5—H50.9300N3—H30.91 (3)
C6—N31.335 (4)O2—H3A1.25 (4)
C6—H60.9300O3—H3A1.20 (4)
C7—N31.332 (4)O1W—H1WA0.841 (18)
C7—C81.364 (4)O1W—H1WB0.810 (18)
C7—H70.9300
N1—C1—C2109.0 (2)O3—C10—C2117.5 (2)
N1—C1—C9119.0 (2)O1i—Co1—O1180.00 (11)
C2—C1—C9132.0 (2)O1i—Co1—O1Wi91.89 (9)
N2—C2—C1108.8 (2)O1—Co1—O1Wi88.11 (9)
N2—C2—C10121.5 (2)O1i—Co1—O1W88.11 (9)
C1—C2—C10129.6 (2)O1—Co1—O1W91.89 (9)
N2—C3—N1114.1 (2)O1Wi—Co1—O1W180.0
N2—C3—C4120.3 (2)O1i—Co1—N1i79.89 (7)
N1—C3—C4125.6 (2)O1—Co1—N1i100.11 (7)
C8—C4—C5117.5 (2)O1Wi—Co1—N1i90.55 (8)
C8—C4—C3119.3 (2)O1W—Co1—N1i89.45 (8)
C5—C4—C3123.2 (2)O1i—Co1—N1100.11 (7)
C6—C5—C4119.2 (3)O1—Co1—N179.89 (7)
C6—C5—H5120.4O1Wi—Co1—N189.45 (8)
C4—C5—H5120.4O1W—Co1—N190.55 (8)
N3—C6—C5121.5 (3)N1i—Co1—N1180.0
N3—C6—H6119.2C3—N1—C1103.8 (2)
C5—C6—H6119.2C3—N1—Co1147.82 (17)
N3—C7—C8120.7 (3)C1—N1—Co1104.92 (16)
N3—C7—H7119.7C3—N2—C2104.3 (2)
C8—C7—H7119.7C7—N3—C6120.8 (3)
C7—C8—C4120.2 (3)C7—N3—H3118 (2)
C7—C8—H8119.9C6—N3—H3121 (2)
C4—C8—H8119.9C9—O1—Co1113.00 (17)
O1—C9—O2122.6 (2)C9—O2—H3A109.5 (17)
O1—C9—C1117.9 (2)C10—O3—H3A112.3 (17)
O2—C9—C1119.6 (2)Co1—O1W—H1WA121 (2)
O4—C10—O3122.5 (2)Co1—O1W—H1WB127 (2)
O4—C10—C2120.0 (2)H1WA—O1W—H1WB109 (3)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···N2ii0.84 (2)2.05 (2)2.889 (3)176 (4)
O1W—H1WB···O4iii0.81 (2)2.27 (2)3.046 (3)161 (4)
N3—H3···O4iv0.91 (3)1.86 (3)2.754 (3)170 (3)
O3—H3A···O21.20 (4)1.25 (4)2.451 (3)172 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯N2i0.84 (2)2.05 (2)2.889 (3)176 (4)
O1W—H1WB⋯O4ii0.81 (2)2.27 (2)3.046 (3)161 (4)
N3—H3⋯O4iii0.91 (3)1.86 (3)2.754 (3)170 (3)
O3—H3A⋯O21.20 (4)1.25 (4)2.451 (3)172 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Diaqua-bis[5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ido-κN,O]iron(II).

Authors:  Xia Li; Wei Liu; Ben-Lai Wu; Hong-Yun Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24
  2 in total

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