Literature DB >> 21588565

trans-Diaqua-bis-[5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ido-κN,O]zinc(II).

Xia Li, Ling-Zhi Du, Ben-Lai Wu, Hong-Yun Zhang.   

Abstract

In the title complex, [Zn(C(10)H(6)N(3)O(4))(2)(H(2)O)(2)], the Zn(II) atom is located on a twofold rotation axis and is coordinated by two trans-positioned N,O-bidentate and zwitterionic 5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ide (H(2)PIDC(-)) ligands and two water mol-ecules, defining a distorted octa-hedral environment. The complete solid-state structure can be described as a three-dimensional supra-molecular framework, stabilized by extensive hydrogen-bonding inter-actions involving the coordinated water mol-ecules, uncoordin-ated imidazole N atom, protonated pyridine N and carboxyl-ate O atoms of the H(2)PIDC(-) ligands.

Entities:  

Year:  2010        PMID: 21588565      PMCID: PMC3007913          DOI: 10.1107/S1600536810031855

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Li, Liu et al. (2009 ▶); Li, Wu et al. (2009 ▶). For the preparation of 2-(pyridin-4-yl)-1H-imidazole-4,5-dicarb­oxy­lic acid, see: Sun et al. (2006 ▶).

Experimental

Crystal data

[Zn(C10H6N3O4)2(H2O)2] M = 565.76 Monoclinic, a = 7.4138 (9) Å b = 20.204 (3) Å c = 13.4778 (17) Å β = 97.008 (1)° V = 2003.7 (4) Å3 Z = 4 Mo Kα radiation μ = 1.31 mm−1 T = 173 K 0.27 × 0.17 × 0.10 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2000 ▶) T min = 0.754, T max = 0.878 9235 measured reflections 2488 independent reflections 1957 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.090 S = 1.04 2488 reflections 178 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrystalClear (Rigaku, 2000 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810031855/jh2196sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031855/jh2196Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C10H6N3O4)2(H2O)2]F(000) = 1152
Mr = 565.76Dx = 1.875 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 7.4138 (9) Åθ = 2.5–28.3°
b = 20.204 (3) ŵ = 1.31 mm1
c = 13.4778 (17) ÅT = 173 K
β = 97.008 (1)°Block, colorless
V = 2003.7 (4) Å30.27 × 0.17 × 0.10 mm
Z = 4
Rigaku Mercury CCD diffractometer2488 independent reflections
Radiation source: fine-focus sealed tube1957 reflections with I > 2σ(I)
graphiteRint = 0.031
ω scanθmax = 28.3°, θmin = 2.5°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2000)h = −9→9
Tmin = 0.754, Tmax = 0.878k = −26→26
9235 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0453P)2 + 2.1588P] where P = (Fo2 + 2Fc2)/3
2488 reflections(Δ/σ)max < 0.001
178 parametersΔρmax = 0.34 e Å3
1 restraintΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.25000.25000.50000.02158 (12)
O10.1031 (3)0.21527 (11)0.36331 (14)0.0405 (5)
N1−0.0003 (2)0.26283 (8)0.56460 (13)0.0181 (3)
C10.0872 (3)0.37351 (10)0.51444 (16)0.0230 (4)
O20.1956 (2)0.34788 (7)0.46161 (13)0.0296 (4)
N2−0.2095 (2)0.28420 (8)0.67035 (13)0.0204 (4)
C2−0.2007 (3)0.40644 (10)0.68011 (17)0.0239 (4)
O30.0612 (2)0.43586 (7)0.51721 (13)0.0355 (4)
N3−0.2067 (3)0.03644 (9)0.68078 (15)0.0283 (4)
H3−0.2203−0.00560.69530.034*
C3−0.0184 (3)0.32960 (9)0.57348 (15)0.0184 (4)
O4−0.1528 (3)0.46001 (7)0.63823 (14)0.0368 (4)
C4−0.1451 (3)0.34251 (9)0.63948 (15)0.0192 (4)
O5−0.2869 (2)0.40756 (8)0.75300 (12)0.0322 (4)
C5−0.1194 (3)0.23786 (9)0.62332 (15)0.0184 (4)
C6−0.1542 (3)0.16745 (9)0.63892 (15)0.0180 (4)
C7−0.2469 (3)0.14843 (10)0.71861 (17)0.0250 (5)
H7−0.29490.18110.75870.030*
C8−0.2687 (3)0.08256 (11)0.73901 (17)0.0278 (5)
H8−0.32790.06980.79460.033*
C9−0.1247 (3)0.05237 (11)0.60116 (18)0.0311 (5)
H9−0.08660.01840.55970.037*
C10−0.0947 (3)0.11772 (10)0.57857 (17)0.0251 (5)
H10−0.03430.12880.52260.030*
H1B−0.008 (4)0.2148 (13)0.353 (2)0.030*
H1A0.135 (4)0.1903 (13)0.324 (2)0.030*
H4A−0.080 (3)0.4538 (12)0.5916 (16)0.030*
U11U22U33U12U13U23
Zn10.0248 (2)0.01734 (18)0.0245 (2)0.00358 (13)0.01053 (13)0.00102 (13)
O10.0245 (9)0.0669 (14)0.0305 (10)0.0044 (9)0.0054 (8)−0.0200 (9)
N10.0208 (8)0.0139 (8)0.0206 (8)0.0008 (6)0.0066 (7)0.0011 (6)
C10.0266 (11)0.0175 (10)0.0261 (11)0.0015 (8)0.0088 (9)0.0026 (8)
O20.0361 (9)0.0201 (7)0.0366 (9)0.0046 (7)0.0203 (7)0.0067 (7)
N20.0216 (9)0.0161 (8)0.0250 (9)−0.0002 (7)0.0085 (7)−0.0004 (7)
C20.0263 (11)0.0184 (10)0.0280 (11)0.0016 (8)0.0077 (9)−0.0012 (8)
O30.0493 (11)0.0144 (7)0.0482 (11)0.0022 (7)0.0275 (9)0.0071 (7)
N30.0356 (11)0.0140 (8)0.0359 (11)−0.0042 (7)0.0074 (8)0.0035 (7)
C30.0209 (10)0.0140 (9)0.0212 (10)0.0006 (7)0.0063 (8)0.0004 (7)
O40.0576 (12)0.0155 (7)0.0430 (10)0.0036 (7)0.0291 (9)−0.0001 (7)
C40.0222 (10)0.0144 (9)0.0220 (10)0.0007 (7)0.0062 (8)0.0013 (7)
O50.0417 (10)0.0220 (8)0.0370 (9)0.0018 (7)0.0215 (8)−0.0053 (7)
C50.0204 (10)0.0153 (9)0.0199 (10)−0.0008 (7)0.0045 (8)0.0015 (7)
C60.0186 (10)0.0145 (9)0.0213 (10)−0.0013 (7)0.0034 (8)0.0016 (7)
C70.0309 (12)0.0183 (10)0.0275 (11)−0.0017 (8)0.0101 (9)−0.0008 (8)
C80.0324 (12)0.0239 (11)0.0287 (12)−0.0055 (9)0.0109 (10)0.0054 (9)
C90.0411 (14)0.0190 (10)0.0353 (13)−0.0016 (9)0.0137 (10)−0.0037 (9)
C100.0312 (12)0.0195 (10)0.0266 (11)−0.0023 (8)0.0115 (9)−0.0011 (8)
Zn1—O22.0713 (15)C2—O41.290 (3)
Zn1—O2i2.0713 (15)C2—C41.481 (3)
Zn1—O12.1407 (18)N3—C91.336 (3)
Zn1—O1i2.1407 (18)N3—C81.335 (3)
Zn1—N1i2.1592 (17)N3—H30.8800
Zn1—N12.1592 (17)C3—C41.395 (3)
O1—H1B0.82 (3)O4—H4A0.885 (16)
O1—H1A0.78 (3)C5—C61.466 (2)
N1—C51.353 (3)C6—C71.398 (3)
N1—C31.362 (2)C6—C101.397 (3)
C1—O21.249 (3)C7—C81.372 (3)
C1—O31.276 (2)C7—H70.9500
C1—C31.478 (3)C8—H80.9500
N2—C51.352 (3)C9—C101.379 (3)
N2—C41.355 (2)C9—H90.9500
C2—O51.236 (3)C10—H100.9500
O2—Zn1—O2i180.0C9—N3—C8121.80 (19)
O2—Zn1—O192.00 (8)C9—N3—H3119.1
O2i—Zn1—O188.00 (8)C8—N3—H3119.1
O2—Zn1—O1i88.00 (8)N1—C3—C4108.82 (17)
O2i—Zn1—O1i92.00 (8)N1—C3—C1118.85 (17)
O1—Zn1—O1i180.0C4—C3—C1132.32 (18)
O2—Zn1—N1i99.47 (6)C2—O4—H4A114.6 (16)
O2i—Zn1—N1i80.53 (6)N2—C4—C3108.85 (17)
O1—Zn1—N1i89.17 (7)N2—C4—C2121.34 (18)
O1i—Zn1—N1i90.83 (7)C3—C4—C2129.67 (18)
O2—Zn1—N180.53 (6)N1—C5—N2114.27 (17)
O2i—Zn1—N199.47 (6)N1—C5—C6125.79 (18)
O1—Zn1—N190.83 (7)N2—C5—C6119.94 (18)
O1i—Zn1—N189.17 (7)C7—C6—C10117.99 (18)
N1i—Zn1—N1180.0C7—C6—C5119.26 (18)
Zn1—O1—H1B123.2 (19)C10—C6—C5122.73 (18)
Zn1—O1—H1A129 (2)C8—C7—C6120.1 (2)
H1B—O1—H1A105 (3)C8—C7—H7120.0
C5—N1—C3103.85 (16)C6—C7—H7120.0
C5—N1—Zn1147.69 (13)N3—C8—C7120.1 (2)
C3—N1—Zn1104.67 (12)N3—C8—H8119.9
O2—C1—O3122.40 (19)C7—C8—H8119.9
O2—C1—C3118.55 (18)N3—C9—C10120.6 (2)
O3—C1—C3119.02 (18)N3—C9—H9119.7
C1—O2—Zn1111.87 (13)C10—C9—H9119.7
C5—N2—C4104.20 (17)C9—C10—C6119.3 (2)
O5—C2—O4121.93 (19)C9—C10—H10120.4
O5—C2—C4120.28 (19)C6—C10—H10120.4
O4—C2—C4117.77 (19)
O2—Zn1—N1—C5−170.7 (3)N1—C3—C4—N2−1.3 (2)
O2i—Zn1—N1—C59.3 (3)C1—C3—C4—N2177.0 (2)
O1—Zn1—N1—C597.4 (3)N1—C3—C4—C2174.4 (2)
O1i—Zn1—N1—C5−82.6 (3)C1—C3—C4—C2−7.3 (4)
N1i—Zn1—N1—C537 (16)O5—C2—C4—N210.2 (3)
O2—Zn1—N1—C3−19.40 (13)O4—C2—C4—N2−171.3 (2)
O2i—Zn1—N1—C3160.60 (13)O5—C2—C4—C3−165.1 (2)
O1—Zn1—N1—C3−111.28 (14)O4—C2—C4—C313.5 (4)
O1i—Zn1—N1—C368.72 (14)C3—N1—C5—N2−1.2 (2)
N1i—Zn1—N1—C3−171 (100)Zn1—N1—C5—N2150.2 (2)
O3—C1—O2—Zn1166.35 (18)C3—N1—C5—C6179.3 (2)
C3—C1—O2—Zn1−15.4 (3)Zn1—N1—C5—C6−29.3 (4)
O2i—Zn1—O2—C124 (100)C4—N2—C5—N10.4 (2)
O1—Zn1—O2—C1110.06 (17)C4—N2—C5—C6179.97 (19)
O1i—Zn1—O2—C1−69.94 (17)N1—C5—C6—C7164.9 (2)
N1i—Zn1—O2—C1−160.45 (16)N2—C5—C6—C7−14.7 (3)
N1—Zn1—O2—C119.55 (16)N1—C5—C6—C10−13.6 (3)
C5—N1—C3—C41.5 (2)N2—C5—C6—C10166.9 (2)
Zn1—N1—C3—C4−163.20 (14)C10—C6—C7—C83.5 (3)
C5—N1—C3—C1−177.10 (19)C5—C6—C7—C8−175.1 (2)
Zn1—N1—C3—C118.2 (2)C9—N3—C8—C7−0.8 (4)
O2—C1—C3—N1−3.1 (3)C6—C7—C8—N3−2.2 (3)
O3—C1—C3—N1175.2 (2)C8—N3—C9—C102.6 (4)
O2—C1—C3—C4178.8 (2)N3—C9—C10—C6−1.2 (4)
O3—C1—C3—C4−3.0 (4)C7—C6—C10—C9−1.8 (3)
C5—N2—C4—C30.6 (2)C5—C6—C10—C9176.7 (2)
C5—N2—C4—C2−175.55 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1B···N2ii0.82 (3)2.08 (3)2.898 (3)178 (3)
N3—H3···O5iii0.881.892.755 (2)169.
O4—H4A···O30.89 (2)1.58 (2)2.459 (2)173 (3)
Table 1

Selected bond lengths (Å)

Zn1—O22.0713 (15)
Zn1—O12.1407 (18)
Zn1—N12.1592 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1B⋯N2i0.82 (3)2.08 (3)2.898 (3)178 (3)
N3—H3⋯O5ii0.881.892.755 (2)169
O4—H4A⋯O30.89 (2)1.58 (2)2.459 (2)173 (3)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Diaqua-bis[5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ido-κN,O]iron(II).

Authors:  Xia Li; Wei Liu; Ben-Lai Wu; Hong-Yun Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24
  2 in total

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