| Literature DB >> 21588565 |
Xia Li, Ling-Zhi Du, Ben-Lai Wu, Hong-Yun Zhang.
Abstract
In the title complex, [Zn(C(10)H(6)N(3)O(4))(2)(H(2)O)(2)], the Zn(II) atom is located on a twofold rotation axis and is coordinated by two trans-positioned N,O-bidentate and zwitterionic 5-carb-oxy-4-carboxyl-ato-2-(4-pyridinio)-1H-imidazol-1-ide (H(2)PIDC(-)) ligands and two water mol-ecules, defining a distorted octa-hedral environment. The complete solid-state structure can be described as a three-dimensional supra-molecular framework, stabilized by extensive hydrogen-bonding inter-actions involving the coordinated water mol-ecules, uncoordin-ated imidazole N atom, protonated pyridine N and carboxyl-ate O atoms of the H(2)PIDC(-) ligands.Entities:
Year: 2010 PMID: 21588565 PMCID: PMC3007913 DOI: 10.1107/S1600536810031855
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Zn(C10H6N3O4)2(H2O)2] | |
| Monoclinic, | Mo |
| θ = 2.5–28.3° | |
| µ = 1.31 mm−1 | |
| β = 97.008 (1)° | Block, colorless |
| 0.27 × 0.17 × 0.10 mm | |
| Rigaku Mercury CCD diffractometer | 2488 independent reflections |
| Radiation source: fine-focus sealed tube | 1957 reflections with |
| graphite | |
| ω scan | θmax = 28.3°, θmin = 2.5° |
| Absorption correction: multi-scan ( | |
| 9235 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2488 reflections | (Δ/σ)max < 0.001 |
| 178 parameters | Δρmax = 0.34 e Å−3 |
| 1 restraint | Δρmin = −0.37 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Zn1 | 0.2500 | 0.2500 | 0.5000 | 0.02158 (12) | |
| O1 | 0.1031 (3) | 0.21527 (11) | 0.36331 (14) | 0.0405 (5) | |
| N1 | −0.0003 (2) | 0.26283 (8) | 0.56460 (13) | 0.0181 (3) | |
| C1 | 0.0872 (3) | 0.37351 (10) | 0.51444 (16) | 0.0230 (4) | |
| O2 | 0.1956 (2) | 0.34788 (7) | 0.46161 (13) | 0.0296 (4) | |
| N2 | −0.2095 (2) | 0.28420 (8) | 0.67035 (13) | 0.0204 (4) | |
| C2 | −0.2007 (3) | 0.40644 (10) | 0.68011 (17) | 0.0239 (4) | |
| O3 | 0.0612 (2) | 0.43586 (7) | 0.51721 (13) | 0.0355 (4) | |
| N3 | −0.2067 (3) | 0.03644 (9) | 0.68078 (15) | 0.0283 (4) | |
| H3 | −0.2203 | −0.0056 | 0.6953 | 0.034* | |
| C3 | −0.0184 (3) | 0.32960 (9) | 0.57348 (15) | 0.0184 (4) | |
| O4 | −0.1528 (3) | 0.46001 (7) | 0.63823 (14) | 0.0368 (4) | |
| C4 | −0.1451 (3) | 0.34251 (9) | 0.63948 (15) | 0.0192 (4) | |
| O5 | −0.2869 (2) | 0.40756 (8) | 0.75300 (12) | 0.0322 (4) | |
| C5 | −0.1194 (3) | 0.23786 (9) | 0.62332 (15) | 0.0184 (4) | |
| C6 | −0.1542 (3) | 0.16745 (9) | 0.63892 (15) | 0.0180 (4) | |
| C7 | −0.2469 (3) | 0.14843 (10) | 0.71861 (17) | 0.0250 (5) | |
| H7 | −0.2949 | 0.1811 | 0.7587 | 0.030* | |
| C8 | −0.2687 (3) | 0.08256 (11) | 0.73901 (17) | 0.0278 (5) | |
| H8 | −0.3279 | 0.0698 | 0.7946 | 0.033* | |
| C9 | −0.1247 (3) | 0.05237 (11) | 0.60116 (18) | 0.0311 (5) | |
| H9 | −0.0866 | 0.0184 | 0.5597 | 0.037* | |
| C10 | −0.0947 (3) | 0.11772 (10) | 0.57857 (17) | 0.0251 (5) | |
| H10 | −0.0343 | 0.1288 | 0.5226 | 0.030* | |
| H1B | −0.008 (4) | 0.2148 (13) | 0.353 (2) | 0.030* | |
| H1A | 0.135 (4) | 0.1903 (13) | 0.324 (2) | 0.030* | |
| H4A | −0.080 (3) | 0.4538 (12) | 0.5916 (16) | 0.030* |
| Zn1 | 0.0248 (2) | 0.01734 (18) | 0.0245 (2) | 0.00358 (13) | 0.01053 (13) | 0.00102 (13) |
| O1 | 0.0245 (9) | 0.0669 (14) | 0.0305 (10) | 0.0044 (9) | 0.0054 (8) | −0.0200 (9) |
| N1 | 0.0208 (8) | 0.0139 (8) | 0.0206 (8) | 0.0008 (6) | 0.0066 (7) | 0.0011 (6) |
| C1 | 0.0266 (11) | 0.0175 (10) | 0.0261 (11) | 0.0015 (8) | 0.0088 (9) | 0.0026 (8) |
| O2 | 0.0361 (9) | 0.0201 (7) | 0.0366 (9) | 0.0046 (7) | 0.0203 (7) | 0.0067 (7) |
| N2 | 0.0216 (9) | 0.0161 (8) | 0.0250 (9) | −0.0002 (7) | 0.0085 (7) | −0.0004 (7) |
| C2 | 0.0263 (11) | 0.0184 (10) | 0.0280 (11) | 0.0016 (8) | 0.0077 (9) | −0.0012 (8) |
| O3 | 0.0493 (11) | 0.0144 (7) | 0.0482 (11) | 0.0022 (7) | 0.0275 (9) | 0.0071 (7) |
| N3 | 0.0356 (11) | 0.0140 (8) | 0.0359 (11) | −0.0042 (7) | 0.0074 (8) | 0.0035 (7) |
| C3 | 0.0209 (10) | 0.0140 (9) | 0.0212 (10) | 0.0006 (7) | 0.0063 (8) | 0.0004 (7) |
| O4 | 0.0576 (12) | 0.0155 (7) | 0.0430 (10) | 0.0036 (7) | 0.0291 (9) | −0.0001 (7) |
| C4 | 0.0222 (10) | 0.0144 (9) | 0.0220 (10) | 0.0007 (7) | 0.0062 (8) | 0.0013 (7) |
| O5 | 0.0417 (10) | 0.0220 (8) | 0.0370 (9) | 0.0018 (7) | 0.0215 (8) | −0.0053 (7) |
| C5 | 0.0204 (10) | 0.0153 (9) | 0.0199 (10) | −0.0008 (7) | 0.0045 (8) | 0.0015 (7) |
| C6 | 0.0186 (10) | 0.0145 (9) | 0.0213 (10) | −0.0013 (7) | 0.0034 (8) | 0.0016 (7) |
| C7 | 0.0309 (12) | 0.0183 (10) | 0.0275 (11) | −0.0017 (8) | 0.0101 (9) | −0.0008 (8) |
| C8 | 0.0324 (12) | 0.0239 (11) | 0.0287 (12) | −0.0055 (9) | 0.0109 (10) | 0.0054 (9) |
| C9 | 0.0411 (14) | 0.0190 (10) | 0.0353 (13) | −0.0016 (9) | 0.0137 (10) | −0.0037 (9) |
| C10 | 0.0312 (12) | 0.0195 (10) | 0.0266 (11) | −0.0023 (8) | 0.0115 (9) | −0.0011 (8) |
| Zn1—O2 | 2.0713 (15) | C2—O4 | 1.290 (3) |
| Zn1—O2i | 2.0713 (15) | C2—C4 | 1.481 (3) |
| Zn1—O1 | 2.1407 (18) | N3—C9 | 1.336 (3) |
| Zn1—O1i | 2.1407 (18) | N3—C8 | 1.335 (3) |
| Zn1—N1i | 2.1592 (17) | N3—H3 | 0.8800 |
| Zn1—N1 | 2.1592 (17) | C3—C4 | 1.395 (3) |
| O1—H1B | 0.82 (3) | O4—H4A | 0.885 (16) |
| O1—H1A | 0.78 (3) | C5—C6 | 1.466 (2) |
| N1—C5 | 1.353 (3) | C6—C7 | 1.398 (3) |
| N1—C3 | 1.362 (2) | C6—C10 | 1.397 (3) |
| C1—O2 | 1.249 (3) | C7—C8 | 1.372 (3) |
| C1—O3 | 1.276 (2) | C7—H7 | 0.9500 |
| C1—C3 | 1.478 (3) | C8—H8 | 0.9500 |
| N2—C5 | 1.352 (3) | C9—C10 | 1.379 (3) |
| N2—C4 | 1.355 (2) | C9—H9 | 0.9500 |
| C2—O5 | 1.236 (3) | C10—H10 | 0.9500 |
| O2—Zn1—O2i | 180.0 | C9—N3—C8 | 121.80 (19) |
| O2—Zn1—O1 | 92.00 (8) | C9—N3—H3 | 119.1 |
| O2i—Zn1—O1 | 88.00 (8) | C8—N3—H3 | 119.1 |
| O2—Zn1—O1i | 88.00 (8) | N1—C3—C4 | 108.82 (17) |
| O2i—Zn1—O1i | 92.00 (8) | N1—C3—C1 | 118.85 (17) |
| O1—Zn1—O1i | 180.0 | C4—C3—C1 | 132.32 (18) |
| O2—Zn1—N1i | 99.47 (6) | C2—O4—H4A | 114.6 (16) |
| O2i—Zn1—N1i | 80.53 (6) | N2—C4—C3 | 108.85 (17) |
| O1—Zn1—N1i | 89.17 (7) | N2—C4—C2 | 121.34 (18) |
| O1i—Zn1—N1i | 90.83 (7) | C3—C4—C2 | 129.67 (18) |
| O2—Zn1—N1 | 80.53 (6) | N1—C5—N2 | 114.27 (17) |
| O2i—Zn1—N1 | 99.47 (6) | N1—C5—C6 | 125.79 (18) |
| O1—Zn1—N1 | 90.83 (7) | N2—C5—C6 | 119.94 (18) |
| O1i—Zn1—N1 | 89.17 (7) | C7—C6—C10 | 117.99 (18) |
| N1i—Zn1—N1 | 180.0 | C7—C6—C5 | 119.26 (18) |
| Zn1—O1—H1B | 123.2 (19) | C10—C6—C5 | 122.73 (18) |
| Zn1—O1—H1A | 129 (2) | C8—C7—C6 | 120.1 (2) |
| H1B—O1—H1A | 105 (3) | C8—C7—H7 | 120.0 |
| C5—N1—C3 | 103.85 (16) | C6—C7—H7 | 120.0 |
| C5—N1—Zn1 | 147.69 (13) | N3—C8—C7 | 120.1 (2) |
| C3—N1—Zn1 | 104.67 (12) | N3—C8—H8 | 119.9 |
| O2—C1—O3 | 122.40 (19) | C7—C8—H8 | 119.9 |
| O2—C1—C3 | 118.55 (18) | N3—C9—C10 | 120.6 (2) |
| O3—C1—C3 | 119.02 (18) | N3—C9—H9 | 119.7 |
| C1—O2—Zn1 | 111.87 (13) | C10—C9—H9 | 119.7 |
| C5—N2—C4 | 104.20 (17) | C9—C10—C6 | 119.3 (2) |
| O5—C2—O4 | 121.93 (19) | C9—C10—H10 | 120.4 |
| O5—C2—C4 | 120.28 (19) | C6—C10—H10 | 120.4 |
| O4—C2—C4 | 117.77 (19) | ||
| O2—Zn1—N1—C5 | −170.7 (3) | N1—C3—C4—N2 | −1.3 (2) |
| O2i—Zn1—N1—C5 | 9.3 (3) | C1—C3—C4—N2 | 177.0 (2) |
| O1—Zn1—N1—C5 | 97.4 (3) | N1—C3—C4—C2 | 174.4 (2) |
| O1i—Zn1—N1—C5 | −82.6 (3) | C1—C3—C4—C2 | −7.3 (4) |
| N1i—Zn1—N1—C5 | 37 (16) | O5—C2—C4—N2 | 10.2 (3) |
| O2—Zn1—N1—C3 | −19.40 (13) | O4—C2—C4—N2 | −171.3 (2) |
| O2i—Zn1—N1—C3 | 160.60 (13) | O5—C2—C4—C3 | −165.1 (2) |
| O1—Zn1—N1—C3 | −111.28 (14) | O4—C2—C4—C3 | 13.5 (4) |
| O1i—Zn1—N1—C3 | 68.72 (14) | C3—N1—C5—N2 | −1.2 (2) |
| N1i—Zn1—N1—C3 | −171 (100) | Zn1—N1—C5—N2 | 150.2 (2) |
| O3—C1—O2—Zn1 | 166.35 (18) | C3—N1—C5—C6 | 179.3 (2) |
| C3—C1—O2—Zn1 | −15.4 (3) | Zn1—N1—C5—C6 | −29.3 (4) |
| O2i—Zn1—O2—C1 | 24 (100) | C4—N2—C5—N1 | 0.4 (2) |
| O1—Zn1—O2—C1 | 110.06 (17) | C4—N2—C5—C6 | 179.97 (19) |
| O1i—Zn1—O2—C1 | −69.94 (17) | N1—C5—C6—C7 | 164.9 (2) |
| N1i—Zn1—O2—C1 | −160.45 (16) | N2—C5—C6—C7 | −14.7 (3) |
| N1—Zn1—O2—C1 | 19.55 (16) | N1—C5—C6—C10 | −13.6 (3) |
| C5—N1—C3—C4 | 1.5 (2) | N2—C5—C6—C10 | 166.9 (2) |
| Zn1—N1—C3—C4 | −163.20 (14) | C10—C6—C7—C8 | 3.5 (3) |
| C5—N1—C3—C1 | −177.10 (19) | C5—C6—C7—C8 | −175.1 (2) |
| Zn1—N1—C3—C1 | 18.2 (2) | C9—N3—C8—C7 | −0.8 (4) |
| O2—C1—C3—N1 | −3.1 (3) | C6—C7—C8—N3 | −2.2 (3) |
| O3—C1—C3—N1 | 175.2 (2) | C8—N3—C9—C10 | 2.6 (4) |
| O2—C1—C3—C4 | 178.8 (2) | N3—C9—C10—C6 | −1.2 (4) |
| O3—C1—C3—C4 | −3.0 (4) | C7—C6—C10—C9 | −1.8 (3) |
| C5—N2—C4—C3 | 0.6 (2) | C5—C6—C10—C9 | 176.7 (2) |
| C5—N2—C4—C2 | −175.55 (19) |
| H··· | ||||
| O1—H1B···N2ii | 0.82 (3) | 2.08 (3) | 2.898 (3) | 178 (3) |
| N3—H3···O5iii | 0.88 | 1.89 | 2.755 (2) | 169. |
| O4—H4A···O3 | 0.89 (2) | 1.58 (2) | 2.459 (2) | 173 (3) |
Selected bond lengths (Å)
| Zn1—O2 | 2.0713 (15) |
| Zn1—O1 | 2.1407 (18) |
| Zn1—N1 | 2.1592 (17) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.82 (3) | 2.08 (3) | 2.898 (3) | 178 (3) |
| N3—H3⋯O5ii | 0.88 | 1.89 | 2.755 (2) | 169 |
| O4—H4 | 0.89 (2) | 1.58 (2) | 2.459 (2) | 173 (3) |
Symmetry codes: (i) ; (ii) .