Literature DB >> 21582626

3-Methyl-butyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title mol-ecule, C(16)H(19)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. In the crystal, pairs of mol-ecules are linked by I⋯O [3.114 (3) Å] halogen bonding into centrosymmetric dimers. The crystal structure is further stabilized by weak inter-molecular C-H⋯O nonclassical hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582626      PMCID: PMC2969007          DOI: 10.1107/S1600536809011210

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of similar alkyl 2-(5-iodo-3-methyl­sulfinyl-1-benzofuran-2-yl)acetate derivatives, see Choi et al. (2009a ▶,b ▶). For a review of halogen bonding, see Politzer et al. (2007 ▶).

Experimental

Crystal data

C16H19IO4S M = 434.27 Monoclinic, a = 10.6726 (9) Å b = 15.423 (1) Å c = 10.7343 (9) Å β = 102.334 (2)° V = 1726.1 (2) Å3 Z = 4 Mo Kα radiation μ = 1.99 mm−1 T = 173 K 0.40 × 0.40 × 0.30 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.503, T max = 0.587 (expected range = 0.472–0.550) 9111 measured reflections 3357 independent reflections 3152 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.079 S = 1.23 3357 reflections 202 parameters H-atom parameters constrained Δρmax = 0.56 e Å−3 Δρmin = −0.71 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011210/cv2534sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011210/cv2534Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H19IO4SF(000) = 864
Mr = 434.27Dx = 1.671 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 7114 reflections
a = 10.6726 (9) Åθ = 2.4–28.3°
b = 15.423 (1) ŵ = 1.99 mm1
c = 10.7343 (9) ÅT = 173 K
β = 102.334 (2)°Block, colourless
V = 1726.1 (2) Å30.40 × 0.40 × 0.30 mm
Z = 4
Bruker SMART CCD diffractometer3357 independent reflections
Radiation source: fine-focus sealed tube3152 reflections with I > 2σ(I)
graphiteRint = 0.026
Detector resolution: 10.0 pixels mm-1θmax = 26.0°, θmin = 2.4°
φ and ω scansh = −13→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)k = −12→19
Tmin = 0.503, Tmax = 0.587l = −12→13
9111 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: difference Fourier map
wR(F2) = 0.079H-atom parameters constrained
S = 1.23w = 1/[σ2(Fo2) + (0.0195P)2 + 3.2932P] where P = (Fo2 + 2Fc2)/3
3357 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.71 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
I0.98665 (2)0.636473 (16)0.87775 (2)0.03496 (10)
S0.60639 (9)0.32117 (6)0.94130 (8)0.0275 (2)
O10.4562 (2)0.47524 (17)0.6559 (2)0.0306 (6)
O20.1263 (2)0.34631 (17)0.6994 (2)0.0323 (6)
O30.2500 (3)0.43238 (19)0.8438 (3)0.0422 (7)
O40.7470 (2)0.30422 (17)0.9660 (3)0.0360 (6)
C10.5707 (3)0.4021 (2)0.8231 (3)0.0248 (7)
C20.6445 (3)0.4775 (2)0.8026 (3)0.0241 (7)
C30.7649 (3)0.5115 (2)0.8584 (3)0.0244 (7)
H30.81890.48450.92960.029*
C40.8018 (3)0.5868 (2)0.8045 (3)0.0281 (7)
C50.7231 (4)0.6290 (2)0.7033 (4)0.0311 (8)
H50.75150.68120.67130.037*
C60.6029 (4)0.5957 (2)0.6480 (3)0.0323 (8)
H60.54750.62390.57880.039*
C70.5685 (3)0.5196 (2)0.6990 (3)0.0275 (8)
C80.4610 (3)0.4037 (2)0.7323 (3)0.0290 (8)
C90.3470 (3)0.3461 (3)0.7034 (4)0.0329 (9)
H9A0.37070.28790.73980.040*
H9B0.31850.33990.60990.040*
C100.2375 (3)0.3817 (2)0.7578 (3)0.0285 (8)
C110.0149 (4)0.3741 (3)0.7474 (4)0.0439 (10)
H11A0.00560.43790.74120.053*
H11B0.02460.35710.83790.053*
C12−0.1006 (4)0.3307 (3)0.6670 (4)0.0366 (9)
H12A−0.17570.34360.70420.044*
H12B−0.08680.26720.67240.044*
C13−0.1330 (4)0.3561 (3)0.5274 (4)0.0409 (10)
H13−0.05640.34370.49050.049*
C14−0.2427 (5)0.2997 (4)0.4585 (6)0.080 (2)
H14A−0.21750.23850.46840.120*
H14B−0.26310.31470.36770.120*
H14C−0.31830.30930.49490.120*
C15−0.1639 (5)0.4518 (4)0.5093 (5)0.0607 (14)
H15A−0.24150.46490.54080.091*
H15B−0.17810.46640.41850.091*
H15C−0.09210.48610.55700.091*
C160.5774 (4)0.3837 (3)1.0723 (4)0.0367 (9)
H16A0.59520.34831.14990.055*
H16B0.48760.40251.05460.055*
H16C0.63350.43471.08440.055*
U11U22U33U12U13U23
I0.03406 (15)0.03270 (15)0.03724 (15)−0.01078 (10)0.00567 (10)0.00262 (11)
S0.0287 (5)0.0217 (4)0.0313 (4)−0.0019 (3)0.0046 (4)−0.0022 (3)
O10.0250 (13)0.0389 (14)0.0249 (12)0.0014 (11)−0.0010 (10)−0.0019 (11)
O20.0220 (12)0.0414 (15)0.0322 (13)0.0005 (11)0.0032 (10)−0.0092 (11)
O30.0378 (16)0.0473 (17)0.0421 (16)−0.0048 (13)0.0102 (13)−0.0208 (14)
O40.0285 (14)0.0327 (14)0.0448 (16)0.0031 (11)0.0030 (12)0.0004 (12)
C10.0253 (17)0.0234 (17)0.0256 (17)0.0004 (14)0.0052 (14)−0.0033 (14)
C20.0240 (17)0.0256 (17)0.0232 (16)0.0027 (14)0.0062 (13)−0.0033 (13)
C30.0236 (17)0.0273 (17)0.0215 (16)0.0013 (14)0.0034 (13)0.0009 (13)
C40.0275 (18)0.0285 (18)0.0283 (18)0.0008 (15)0.0059 (14)−0.0023 (15)
C50.038 (2)0.0248 (18)0.0326 (19)0.0008 (15)0.0128 (16)0.0011 (15)
C60.040 (2)0.0325 (19)0.0228 (17)0.0080 (17)0.0028 (15)0.0014 (15)
C70.0287 (19)0.0304 (18)0.0229 (16)0.0034 (15)0.0046 (14)−0.0019 (14)
C80.0261 (18)0.0315 (19)0.0292 (18)0.0029 (15)0.0051 (14)−0.0072 (15)
C90.0237 (18)0.035 (2)0.039 (2)−0.0035 (15)0.0030 (16)−0.0122 (16)
C100.0270 (18)0.0294 (18)0.0273 (17)0.0008 (15)0.0019 (14)0.0000 (15)
C110.030 (2)0.064 (3)0.039 (2)0.008 (2)0.0081 (17)−0.009 (2)
C120.0242 (19)0.042 (2)0.045 (2)0.0004 (17)0.0108 (17)−0.0001 (18)
C130.035 (2)0.046 (2)0.040 (2)0.0111 (19)0.0043 (18)−0.0060 (19)
C140.048 (3)0.091 (5)0.089 (4)0.002 (3)−0.014 (3)−0.037 (4)
C150.059 (3)0.065 (3)0.058 (3)0.025 (3)0.014 (3)0.015 (3)
C160.049 (2)0.034 (2)0.0293 (19)0.0004 (18)0.0129 (17)−0.0031 (16)
I—C42.106 (4)C9—C101.515 (5)
I—O4i3.114 (3)C9—H9A0.9900
S—O41.490 (3)C9—H9B0.9900
S—C11.762 (4)C11—C121.503 (6)
S—C161.786 (4)C11—H11A0.9900
O1—C81.369 (5)C11—H11B0.9900
O1—C71.372 (4)C12—C131.516 (6)
O2—C101.335 (4)C12—H12A0.9900
O2—C111.457 (5)C12—H12B0.9900
O3—C101.195 (4)C13—C151.517 (6)
C1—C81.355 (5)C13—C141.518 (7)
C1—C21.448 (5)C13—H131.0000
C2—C71.390 (5)C14—H14A0.9800
C2—C31.398 (5)C14—H14B0.9800
C3—C41.391 (5)C14—H14C0.9800
C3—H30.9500C15—H15A0.9800
C4—C51.386 (5)C15—H15B0.9800
C5—C61.392 (5)C15—H15C0.9800
C5—H50.9500C16—H16A0.9800
C6—C71.379 (5)C16—H16B0.9800
C6—H60.9500C16—H16C0.9800
C8—C91.484 (5)
C4—I—O4i169.4 (1)O2—C10—C9110.6 (3)
O4—S—C1107.9 (2)O2—C11—C12107.3 (3)
O4—S—C16107.0 (2)O2—C11—H11A110.3
C1—S—C1697.9 (2)C12—C11—H11A110.3
C8—O1—C7106.4 (3)O2—C11—H11B110.3
C10—O2—C11115.1 (3)C12—C11—H11B110.3
C8—C1—C2106.9 (3)H11A—C11—H11B108.5
C8—C1—S123.5 (3)C11—C12—C13116.0 (4)
C2—C1—S129.6 (3)C11—C12—H12A108.3
C7—C2—C3119.6 (3)C13—C12—H12A108.3
C7—C2—C1104.6 (3)C11—C12—H12B108.3
C3—C2—C1135.8 (3)C13—C12—H12B108.3
C4—C3—C2116.8 (3)H12A—C12—H12B107.4
C4—C3—H3121.6C12—C13—C15112.1 (4)
C2—C3—H3121.6C12—C13—C14108.8 (4)
C5—C4—C3122.7 (3)C15—C13—C14111.8 (4)
C5—C4—I119.0 (3)C12—C13—H13108.0
C3—C4—I118.3 (3)C15—C13—H13108.0
C4—C5—C6120.7 (3)C14—C13—H13108.0
C4—C5—H5119.6C13—C14—H14A109.5
C6—C5—H5119.6C13—C14—H14B109.5
C7—C6—C5116.3 (3)H14A—C14—H14B109.5
C7—C6—H6121.8C13—C14—H14C109.5
C5—C6—H6121.8H14A—C14—H14C109.5
O1—C7—C6125.3 (3)H14B—C14—H14C109.5
O1—C7—C2110.9 (3)C13—C15—H15A109.5
C6—C7—C2123.8 (3)C13—C15—H15B109.5
C1—C8—O1111.2 (3)H15A—C15—H15B109.5
C1—C8—C9133.1 (4)C13—C15—H15C109.5
O1—C8—C9115.7 (3)H15A—C15—H15C109.5
C8—C9—C10111.6 (3)H15B—C15—H15C109.5
C8—C9—H9A109.3S—C16—H16A109.5
C10—C9—H9A109.3S—C16—H16B109.5
C8—C9—H9B109.3H16A—C16—H16B109.5
C10—C9—H9B109.3S—C16—H16C109.5
H9A—C9—H9B108.0H16A—C16—H16C109.5
O3—C10—O2124.8 (4)H16B—C16—H16C109.5
O3—C10—C9124.5 (3)
O4—S—C1—C8144.4 (3)C3—C2—C7—O1178.4 (3)
C16—S—C1—C8−104.9 (3)C1—C2—C7—O1−0.3 (4)
O4—S—C1—C2−36.8 (4)C3—C2—C7—C6−1.8 (5)
C16—S—C1—C274.0 (4)C1—C2—C7—C6179.5 (3)
C8—C1—C2—C71.0 (4)C2—C1—C8—O1−1.3 (4)
S—C1—C2—C7−178.0 (3)S—C1—C8—O1177.8 (2)
C8—C1—C2—C3−177.4 (4)C2—C1—C8—C9−179.0 (4)
S—C1—C2—C33.6 (6)S—C1—C8—C90.0 (6)
C7—C2—C3—C4−0.4 (5)C7—O1—C8—C11.1 (4)
C1—C2—C3—C4177.7 (4)C7—O1—C8—C9179.3 (3)
C2—C3—C4—C52.2 (5)C1—C8—C9—C1098.3 (5)
C2—C3—C4—I−176.4 (2)O1—C8—C9—C10−79.4 (4)
O4i—I—C4—C5149.4 (5)C11—O2—C10—O30.4 (5)
O4i—I—C4—C3−31.9 (8)C11—O2—C10—C9178.1 (3)
C3—C4—C5—C6−1.9 (6)C8—C9—C10—O3−21.8 (6)
I—C4—C5—C6176.7 (3)C8—C9—C10—O2160.4 (3)
C4—C5—C6—C7−0.3 (5)C10—O2—C11—C12177.6 (3)
C8—O1—C7—C6179.7 (3)O2—C11—C12—C13−64.3 (5)
C8—O1—C7—C2−0.4 (4)C11—C12—C13—C15−61.6 (5)
C5—C6—C7—O1−178.1 (3)C11—C12—C13—C14174.2 (4)
C5—C6—C7—C22.1 (5)
D—H···AD—HH···AD···AD—H···A
C5—H5···O4ii0.952.413.310 (5)159
C16—H16C···O3iii0.982.443.397 (5)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C5—H5⋯O4i0.952.413.310 (5)159
C16—H16C⋯O3ii0.982.443.397 (5)167

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An overview of halogen bonding.

Authors:  Peter Politzer; Pat Lane; Monica C Concha; Yuguang Ma; Jane S Murray
Journal:  J Mol Model       Date:  2006-09-30       Impact factor: 1.810

3.  Propyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17

4.  Butyl 2-(5-iodo-3-methyl-sulfinyl-1-benzofuran-2-yl)acetate.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08
  4 in total

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