| Literature DB >> 21582626 |
Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.
Abstract
In the title mol-ecule, C(16)H(19)IO(4)S, the O atom and the methyl group of the methyl-sulfinyl substituent lie on opposite sides of the plane of the benzofuran fragment. In the crystal, pairs of mol-ecules are linked by I⋯O [3.114 (3) Å] halogen bonding into centrosymmetric dimers. The crystal structure is further stabilized by weak inter-molecular C-H⋯O nonclassical hydrogen bonds.Entities:
Year: 2009 PMID: 21582626 PMCID: PMC2969007 DOI: 10.1107/S1600536809011210
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H19IO4S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 7114 reflections |
| θ = 2.4–28.3° | |
| µ = 1.99 mm−1 | |
| β = 102.334 (2)° | Block, colourless |
| 0.40 × 0.40 × 0.30 mm | |
| Bruker SMART CCD diffractometer | 3357 independent reflections |
| Radiation source: fine-focus sealed tube | 3152 reflections with |
| graphite | |
| Detector resolution: 10.0 pixels mm-1 | θmax = 26.0°, θmin = 2.4° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 9111 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H-atom parameters constrained | |
| 3357 reflections | (Δ/σ)max < 0.001 |
| 202 parameters | Δρmax = 0.56 e Å−3 |
| 0 restraints | Δρmin = −0.71 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| I | 0.98665 (2) | 0.636473 (16) | 0.87775 (2) | 0.03496 (10) | |
| S | 0.60639 (9) | 0.32117 (6) | 0.94130 (8) | 0.0275 (2) | |
| O1 | 0.4562 (2) | 0.47524 (17) | 0.6559 (2) | 0.0306 (6) | |
| O2 | 0.1263 (2) | 0.34631 (17) | 0.6994 (2) | 0.0323 (6) | |
| O3 | 0.2500 (3) | 0.43238 (19) | 0.8438 (3) | 0.0422 (7) | |
| O4 | 0.7470 (2) | 0.30422 (17) | 0.9660 (3) | 0.0360 (6) | |
| C1 | 0.5707 (3) | 0.4021 (2) | 0.8231 (3) | 0.0248 (7) | |
| C2 | 0.6445 (3) | 0.4775 (2) | 0.8026 (3) | 0.0241 (7) | |
| C3 | 0.7649 (3) | 0.5115 (2) | 0.8584 (3) | 0.0244 (7) | |
| H3 | 0.8189 | 0.4845 | 0.9296 | 0.029* | |
| C4 | 0.8018 (3) | 0.5868 (2) | 0.8045 (3) | 0.0281 (7) | |
| C5 | 0.7231 (4) | 0.6290 (2) | 0.7033 (4) | 0.0311 (8) | |
| H5 | 0.7515 | 0.6812 | 0.6713 | 0.037* | |
| C6 | 0.6029 (4) | 0.5957 (2) | 0.6480 (3) | 0.0323 (8) | |
| H6 | 0.5475 | 0.6239 | 0.5788 | 0.039* | |
| C7 | 0.5685 (3) | 0.5196 (2) | 0.6990 (3) | 0.0275 (8) | |
| C8 | 0.4610 (3) | 0.4037 (2) | 0.7323 (3) | 0.0290 (8) | |
| C9 | 0.3470 (3) | 0.3461 (3) | 0.7034 (4) | 0.0329 (9) | |
| H9A | 0.3707 | 0.2879 | 0.7398 | 0.040* | |
| H9B | 0.3185 | 0.3399 | 0.6099 | 0.040* | |
| C10 | 0.2375 (3) | 0.3817 (2) | 0.7578 (3) | 0.0285 (8) | |
| C11 | 0.0149 (4) | 0.3741 (3) | 0.7474 (4) | 0.0439 (10) | |
| H11A | 0.0056 | 0.4379 | 0.7412 | 0.053* | |
| H11B | 0.0246 | 0.3571 | 0.8379 | 0.053* | |
| C12 | −0.1006 (4) | 0.3307 (3) | 0.6670 (4) | 0.0366 (9) | |
| H12A | −0.1757 | 0.3436 | 0.7042 | 0.044* | |
| H12B | −0.0868 | 0.2672 | 0.6724 | 0.044* | |
| C13 | −0.1330 (4) | 0.3561 (3) | 0.5274 (4) | 0.0409 (10) | |
| H13 | −0.0564 | 0.3437 | 0.4905 | 0.049* | |
| C14 | −0.2427 (5) | 0.2997 (4) | 0.4585 (6) | 0.080 (2) | |
| H14A | −0.2175 | 0.2385 | 0.4684 | 0.120* | |
| H14B | −0.2631 | 0.3147 | 0.3677 | 0.120* | |
| H14C | −0.3183 | 0.3093 | 0.4949 | 0.120* | |
| C15 | −0.1639 (5) | 0.4518 (4) | 0.5093 (5) | 0.0607 (14) | |
| H15A | −0.2415 | 0.4649 | 0.5408 | 0.091* | |
| H15B | −0.1781 | 0.4664 | 0.4185 | 0.091* | |
| H15C | −0.0921 | 0.4861 | 0.5570 | 0.091* | |
| C16 | 0.5774 (4) | 0.3837 (3) | 1.0723 (4) | 0.0367 (9) | |
| H16A | 0.5952 | 0.3483 | 1.1499 | 0.055* | |
| H16B | 0.4876 | 0.4025 | 1.0546 | 0.055* | |
| H16C | 0.6335 | 0.4347 | 1.0844 | 0.055* |
| I | 0.03406 (15) | 0.03270 (15) | 0.03724 (15) | −0.01078 (10) | 0.00567 (10) | 0.00262 (11) |
| S | 0.0287 (5) | 0.0217 (4) | 0.0313 (4) | −0.0019 (3) | 0.0046 (4) | −0.0022 (3) |
| O1 | 0.0250 (13) | 0.0389 (14) | 0.0249 (12) | 0.0014 (11) | −0.0010 (10) | −0.0019 (11) |
| O2 | 0.0220 (12) | 0.0414 (15) | 0.0322 (13) | 0.0005 (11) | 0.0032 (10) | −0.0092 (11) |
| O3 | 0.0378 (16) | 0.0473 (17) | 0.0421 (16) | −0.0048 (13) | 0.0102 (13) | −0.0208 (14) |
| O4 | 0.0285 (14) | 0.0327 (14) | 0.0448 (16) | 0.0031 (11) | 0.0030 (12) | 0.0004 (12) |
| C1 | 0.0253 (17) | 0.0234 (17) | 0.0256 (17) | 0.0004 (14) | 0.0052 (14) | −0.0033 (14) |
| C2 | 0.0240 (17) | 0.0256 (17) | 0.0232 (16) | 0.0027 (14) | 0.0062 (13) | −0.0033 (13) |
| C3 | 0.0236 (17) | 0.0273 (17) | 0.0215 (16) | 0.0013 (14) | 0.0034 (13) | 0.0009 (13) |
| C4 | 0.0275 (18) | 0.0285 (18) | 0.0283 (18) | 0.0008 (15) | 0.0059 (14) | −0.0023 (15) |
| C5 | 0.038 (2) | 0.0248 (18) | 0.0326 (19) | 0.0008 (15) | 0.0128 (16) | 0.0011 (15) |
| C6 | 0.040 (2) | 0.0325 (19) | 0.0228 (17) | 0.0080 (17) | 0.0028 (15) | 0.0014 (15) |
| C7 | 0.0287 (19) | 0.0304 (18) | 0.0229 (16) | 0.0034 (15) | 0.0046 (14) | −0.0019 (14) |
| C8 | 0.0261 (18) | 0.0315 (19) | 0.0292 (18) | 0.0029 (15) | 0.0051 (14) | −0.0072 (15) |
| C9 | 0.0237 (18) | 0.035 (2) | 0.039 (2) | −0.0035 (15) | 0.0030 (16) | −0.0122 (16) |
| C10 | 0.0270 (18) | 0.0294 (18) | 0.0273 (17) | 0.0008 (15) | 0.0019 (14) | 0.0000 (15) |
| C11 | 0.030 (2) | 0.064 (3) | 0.039 (2) | 0.008 (2) | 0.0081 (17) | −0.009 (2) |
| C12 | 0.0242 (19) | 0.042 (2) | 0.045 (2) | 0.0004 (17) | 0.0108 (17) | −0.0001 (18) |
| C13 | 0.035 (2) | 0.046 (2) | 0.040 (2) | 0.0111 (19) | 0.0043 (18) | −0.0060 (19) |
| C14 | 0.048 (3) | 0.091 (5) | 0.089 (4) | 0.002 (3) | −0.014 (3) | −0.037 (4) |
| C15 | 0.059 (3) | 0.065 (3) | 0.058 (3) | 0.025 (3) | 0.014 (3) | 0.015 (3) |
| C16 | 0.049 (2) | 0.034 (2) | 0.0293 (19) | 0.0004 (18) | 0.0129 (17) | −0.0031 (16) |
| I—C4 | 2.106 (4) | C9—C10 | 1.515 (5) |
| I—O4i | 3.114 (3) | C9—H9A | 0.9900 |
| S—O4 | 1.490 (3) | C9—H9B | 0.9900 |
| S—C1 | 1.762 (4) | C11—C12 | 1.503 (6) |
| S—C16 | 1.786 (4) | C11—H11A | 0.9900 |
| O1—C8 | 1.369 (5) | C11—H11B | 0.9900 |
| O1—C7 | 1.372 (4) | C12—C13 | 1.516 (6) |
| O2—C10 | 1.335 (4) | C12—H12A | 0.9900 |
| O2—C11 | 1.457 (5) | C12—H12B | 0.9900 |
| O3—C10 | 1.195 (4) | C13—C15 | 1.517 (6) |
| C1—C8 | 1.355 (5) | C13—C14 | 1.518 (7) |
| C1—C2 | 1.448 (5) | C13—H13 | 1.0000 |
| C2—C7 | 1.390 (5) | C14—H14A | 0.9800 |
| C2—C3 | 1.398 (5) | C14—H14B | 0.9800 |
| C3—C4 | 1.391 (5) | C14—H14C | 0.9800 |
| C3—H3 | 0.9500 | C15—H15A | 0.9800 |
| C4—C5 | 1.386 (5) | C15—H15B | 0.9800 |
| C5—C6 | 1.392 (5) | C15—H15C | 0.9800 |
| C5—H5 | 0.9500 | C16—H16A | 0.9800 |
| C6—C7 | 1.379 (5) | C16—H16B | 0.9800 |
| C6—H6 | 0.9500 | C16—H16C | 0.9800 |
| C8—C9 | 1.484 (5) | ||
| C4—I—O4i | 169.4 (1) | O2—C10—C9 | 110.6 (3) |
| O4—S—C1 | 107.9 (2) | O2—C11—C12 | 107.3 (3) |
| O4—S—C16 | 107.0 (2) | O2—C11—H11A | 110.3 |
| C1—S—C16 | 97.9 (2) | C12—C11—H11A | 110.3 |
| C8—O1—C7 | 106.4 (3) | O2—C11—H11B | 110.3 |
| C10—O2—C11 | 115.1 (3) | C12—C11—H11B | 110.3 |
| C8—C1—C2 | 106.9 (3) | H11A—C11—H11B | 108.5 |
| C8—C1—S | 123.5 (3) | C11—C12—C13 | 116.0 (4) |
| C2—C1—S | 129.6 (3) | C11—C12—H12A | 108.3 |
| C7—C2—C3 | 119.6 (3) | C13—C12—H12A | 108.3 |
| C7—C2—C1 | 104.6 (3) | C11—C12—H12B | 108.3 |
| C3—C2—C1 | 135.8 (3) | C13—C12—H12B | 108.3 |
| C4—C3—C2 | 116.8 (3) | H12A—C12—H12B | 107.4 |
| C4—C3—H3 | 121.6 | C12—C13—C15 | 112.1 (4) |
| C2—C3—H3 | 121.6 | C12—C13—C14 | 108.8 (4) |
| C5—C4—C3 | 122.7 (3) | C15—C13—C14 | 111.8 (4) |
| C5—C4—I | 119.0 (3) | C12—C13—H13 | 108.0 |
| C3—C4—I | 118.3 (3) | C15—C13—H13 | 108.0 |
| C4—C5—C6 | 120.7 (3) | C14—C13—H13 | 108.0 |
| C4—C5—H5 | 119.6 | C13—C14—H14A | 109.5 |
| C6—C5—H5 | 119.6 | C13—C14—H14B | 109.5 |
| C7—C6—C5 | 116.3 (3) | H14A—C14—H14B | 109.5 |
| C7—C6—H6 | 121.8 | C13—C14—H14C | 109.5 |
| C5—C6—H6 | 121.8 | H14A—C14—H14C | 109.5 |
| O1—C7—C6 | 125.3 (3) | H14B—C14—H14C | 109.5 |
| O1—C7—C2 | 110.9 (3) | C13—C15—H15A | 109.5 |
| C6—C7—C2 | 123.8 (3) | C13—C15—H15B | 109.5 |
| C1—C8—O1 | 111.2 (3) | H15A—C15—H15B | 109.5 |
| C1—C8—C9 | 133.1 (4) | C13—C15—H15C | 109.5 |
| O1—C8—C9 | 115.7 (3) | H15A—C15—H15C | 109.5 |
| C8—C9—C10 | 111.6 (3) | H15B—C15—H15C | 109.5 |
| C8—C9—H9A | 109.3 | S—C16—H16A | 109.5 |
| C10—C9—H9A | 109.3 | S—C16—H16B | 109.5 |
| C8—C9—H9B | 109.3 | H16A—C16—H16B | 109.5 |
| C10—C9—H9B | 109.3 | S—C16—H16C | 109.5 |
| H9A—C9—H9B | 108.0 | H16A—C16—H16C | 109.5 |
| O3—C10—O2 | 124.8 (4) | H16B—C16—H16C | 109.5 |
| O3—C10—C9 | 124.5 (3) | ||
| O4—S—C1—C8 | 144.4 (3) | C3—C2—C7—O1 | 178.4 (3) |
| C16—S—C1—C8 | −104.9 (3) | C1—C2—C7—O1 | −0.3 (4) |
| O4—S—C1—C2 | −36.8 (4) | C3—C2—C7—C6 | −1.8 (5) |
| C16—S—C1—C2 | 74.0 (4) | C1—C2—C7—C6 | 179.5 (3) |
| C8—C1—C2—C7 | 1.0 (4) | C2—C1—C8—O1 | −1.3 (4) |
| S—C1—C2—C7 | −178.0 (3) | S—C1—C8—O1 | 177.8 (2) |
| C8—C1—C2—C3 | −177.4 (4) | C2—C1—C8—C9 | −179.0 (4) |
| S—C1—C2—C3 | 3.6 (6) | S—C1—C8—C9 | 0.0 (6) |
| C7—C2—C3—C4 | −0.4 (5) | C7—O1—C8—C1 | 1.1 (4) |
| C1—C2—C3—C4 | 177.7 (4) | C7—O1—C8—C9 | 179.3 (3) |
| C2—C3—C4—C5 | 2.2 (5) | C1—C8—C9—C10 | 98.3 (5) |
| C2—C3—C4—I | −176.4 (2) | O1—C8—C9—C10 | −79.4 (4) |
| O4i—I—C4—C5 | 149.4 (5) | C11—O2—C10—O3 | 0.4 (5) |
| O4i—I—C4—C3 | −31.9 (8) | C11—O2—C10—C9 | 178.1 (3) |
| C3—C4—C5—C6 | −1.9 (6) | C8—C9—C10—O3 | −21.8 (6) |
| I—C4—C5—C6 | 176.7 (3) | C8—C9—C10—O2 | 160.4 (3) |
| C4—C5—C6—C7 | −0.3 (5) | C10—O2—C11—C12 | 177.6 (3) |
| C8—O1—C7—C6 | 179.7 (3) | O2—C11—C12—C13 | −64.3 (5) |
| C8—O1—C7—C2 | −0.4 (4) | C11—C12—C13—C15 | −61.6 (5) |
| C5—C6—C7—O1 | −178.1 (3) | C11—C12—C13—C14 | 174.2 (4) |
| C5—C6—C7—C2 | 2.1 (5) |
| H··· | ||||
| C5—H5···O4ii | 0.95 | 2.41 | 3.310 (5) | 159 |
| C16—H16C···O3iii | 0.98 | 2.44 | 3.397 (5) | 167 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C5—H5⋯O4i | 0.95 | 2.41 | 3.310 (5) | 159 |
| C16—H16 | 0.98 | 2.44 | 3.397 (5) | 167 |
Symmetry codes: (i) ; (ii) .