Literature DB >> 21582495

4-Amino-pyridinium hydrogen succinate.

Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.   

Abstract

In the title salt, C(5)H(7)N(2) (+)·C(4)H(5)O(4) (-), the asymmetric unit comprises an amino-pyridinium cation and a hydrogen succinate anion as protonation of the aromatic N atom of the 4-amino-pyridine mol-ecule has occurred. The crystal packing is stabilized by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds that lead to a two-dimensional array. Short C-H⋯O contacts are also present.

Entities:  

Year:  2009        PMID: 21582495      PMCID: PMC2968853          DOI: 10.1107/S1600536809006990

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 4-amino­pyridine, see: Judge & Bever (2006 ▶); Schwid et al. (1997 ▶); Strupp et al. (2004 ▶). For the applications of succinic acid, see: Sauer et al. (2008 ▶); Song & Lee (2006 ▶); Zeikus et al. (1999 ▶). For related structures, see: Chao & Schempp (1977 ▶); Anderson et al. (2005 ▶); Bhattacharya et al. (1994 ▶); Karle et al. (2003 ▶); Gopalan et al. (2000 ▶); Leviel et al., (1981 ▶). For stability of the temperature controller, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C5H7N2C4H5O4 M = 212.21 Monoclinic, a = 6.5443 (3) Å b = 22.2867 (11) Å c = 7.1112 (4) Å β = 114.587 (4)° V = 943.13 (8) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 100 K 0.38 × 0.14 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.956, T max = 0.991 7174 measured reflections 2176 independent reflections 1483 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.150 S = 1.06 2176 reflections 148 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.44 e Å−3 Δρmin = −0.46 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006990/tk2378sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006990/tk2378Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C4H5O4F(000) = 448
Mr = 212.21Dx = 1.494 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1804 reflections
a = 6.5443 (3) Åθ = 3.4–30.1°
b = 22.2867 (11) ŵ = 0.12 mm1
c = 7.1112 (4) ÅT = 100 K
β = 114.587 (4)°Plate, colourless
V = 943.13 (8) Å30.38 × 0.14 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer2176 independent reflections
Radiation source: fine-focus sealed tube1483 reflections with I > 2σ(I)
graphiteRint = 0.066
φ and ω scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.956, Tmax = 0.991k = −28→28
7174 measured reflectionsl = −9→8
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0786P)2] where P = (Fo2 + 2Fc2)/3
2176 reflections(Δ/σ)max = 0.001
148 parametersΔρmax = 0.44 e Å3
0 restraintsΔρmin = −0.46 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1281 (3)0.19522 (7)0.2994 (3)0.0174 (4)
O2−0.4204 (3)0.24560 (7)0.2995 (3)0.0153 (4)
O30.4285 (3)0.34855 (7)0.2828 (3)0.0176 (4)
O40.1374 (3)0.40250 (7)0.2633 (3)0.0189 (4)
N1−0.2764 (4)0.44695 (9)0.2808 (3)0.0171 (5)
N2−0.4551 (3)0.62442 (9)0.2152 (3)0.0151 (5)
C1−0.5396 (4)0.52400 (10)0.2605 (4)0.0151 (5)
H1A−0.63690.49620.27690.018*
C2−0.5929 (4)0.58295 (10)0.2401 (4)0.0155 (5)
H2A−0.72720.59530.24320.019*
C3−0.2614 (4)0.60783 (10)0.2064 (4)0.0156 (5)
H3A−0.17010.63680.18640.019*
C4−0.1974 (4)0.54940 (10)0.2261 (4)0.0159 (5)
H4A−0.06320.53870.21950.019*
C5−0.3347 (4)0.50458 (10)0.2570 (4)0.0132 (5)
C6−0.2223 (4)0.24291 (10)0.3003 (4)0.0124 (5)
C7−0.1087 (4)0.30270 (9)0.3032 (4)0.0119 (5)
H7A−0.20010.32510.17980.014*
H7B−0.10020.32570.42200.014*
C80.1262 (4)0.29562 (10)0.3127 (4)0.0124 (5)
H8A0.22300.27860.44580.015*
H8B0.12060.26740.20670.015*
C90.2288 (4)0.35388 (10)0.2832 (4)0.0136 (5)
H1O30.49010.30320.28380.016*
H1N1−0.378 (4)0.4190 (13)0.292 (4)0.020 (7)*
H1N2−0.490 (5)0.6636 (14)0.204 (4)0.027 (8)*
H2N1−0.155 (5)0.4361 (11)0.273 (4)0.013 (6)*
U11U22U33U12U13U23
O10.0163 (9)0.0058 (8)0.0317 (11)−0.0004 (6)0.0114 (8)−0.0008 (7)
O20.0120 (8)0.0061 (8)0.0294 (11)−0.0011 (6)0.0102 (8)0.0000 (6)
O30.0139 (9)0.0067 (8)0.0366 (12)0.0003 (6)0.0149 (8)0.0014 (7)
O40.0182 (9)0.0057 (8)0.0358 (12)0.0021 (6)0.0141 (8)0.0021 (7)
N10.0141 (10)0.0079 (10)0.0326 (14)0.0014 (8)0.0131 (10)0.0008 (8)
N20.0170 (11)0.0035 (10)0.0235 (13)0.0024 (7)0.0071 (9)0.0001 (8)
C10.0144 (12)0.0104 (12)0.0225 (15)−0.0008 (8)0.0096 (11)0.0020 (9)
C20.0142 (12)0.0092 (12)0.0240 (15)0.0000 (8)0.0089 (11)0.0002 (9)
C30.0139 (12)0.0131 (12)0.0204 (14)−0.0026 (9)0.0076 (11)0.0010 (10)
C40.0125 (12)0.0111 (12)0.0255 (15)−0.0021 (8)0.0093 (11)−0.0014 (9)
C50.0147 (11)0.0092 (11)0.0137 (13)−0.0011 (8)0.0038 (10)−0.0012 (9)
C60.0128 (11)0.0082 (11)0.0162 (14)−0.0009 (8)0.0060 (10)0.0000 (9)
C70.0117 (11)0.0067 (11)0.0175 (14)0.0002 (8)0.0063 (10)0.0005 (9)
C80.0115 (11)0.0063 (11)0.0205 (14)−0.0005 (8)0.0076 (10)0.0004 (9)
C90.0122 (11)0.0107 (12)0.0195 (14)−0.0002 (8)0.0081 (11)−0.0001 (9)
O1—C61.230 (3)C1—H1A0.9300
O2—C61.295 (3)C2—H2A0.9300
O3—C91.313 (3)C3—C41.357 (3)
O3—H1O31.0871C3—H3A0.9300
O4—C91.217 (3)C4—C51.420 (3)
N1—C51.331 (3)C4—H4A0.9300
N1—H1N10.94 (3)C6—C71.522 (3)
N1—H2N10.86 (3)C7—C81.519 (3)
N2—C31.347 (3)C7—H7A0.9700
N2—C21.354 (3)C7—H7B0.9700
N2—H1N20.90 (3)C8—C91.516 (3)
C1—C21.352 (3)C8—H8A0.9700
C1—C51.419 (3)C8—H8B0.9700
C9—O3—H1O3116.8N1—C5—C4122.1 (2)
C5—N1—H1N1118.3 (16)C1—C5—C4116.8 (2)
C5—N1—H2N1119.4 (17)O1—C6—O2122.88 (19)
H1N1—N1—H2N1122 (2)O1—C6—C7120.88 (19)
C3—N2—C2120.7 (2)O2—C6—C7116.24 (18)
C3—N2—H1N2118.4 (17)C8—C7—C6112.93 (18)
C2—N2—H1N2120.9 (17)C8—C7—H7A109.0
C2—C1—C5119.9 (2)C6—C7—H7A109.0
C2—C1—H1A120.1C8—C7—H7B109.0
C5—C1—H1A120.1C6—C7—H7B109.0
C1—C2—N2121.4 (2)H7A—C7—H7B107.8
C1—C2—H2A119.3C9—C8—C7113.79 (18)
N2—C2—H2A119.3C9—C8—H8A108.8
N2—C3—C4121.0 (2)C7—C8—H8A108.8
N2—C3—H3A119.5C9—C8—H8B108.8
C4—C3—H3A119.5C7—C8—H8B108.8
C3—C4—C5120.2 (2)H8A—C8—H8B107.7
C3—C4—H4A119.9O4—C9—O3121.5 (2)
C5—C4—H4A119.9O4—C9—C8123.62 (19)
N1—C5—C1121.0 (2)O3—C9—C8114.91 (18)
C5—C1—C2—N20.3 (4)C3—C4—C5—C11.5 (4)
C3—N2—C2—C11.2 (4)O1—C6—C7—C8−2.1 (3)
C2—N2—C3—C4−1.3 (4)O2—C6—C7—C8177.7 (2)
N2—C3—C4—C5−0.1 (4)C6—C7—C8—C9171.3 (2)
C2—C1—C5—N1178.7 (2)C7—C8—C9—O43.3 (3)
C2—C1—C5—C4−1.6 (4)C7—C8—C9—O3−177.5 (2)
C3—C4—C5—N1−178.8 (2)
D—H···AD—HH···AD···AD—H···A
O3—H1O3···O2i1.091.402.482 (2)176
N1—H1N1···O3ii0.94 (3)2.00 (3)2.926 (3)168 (3)
N2—H1N2···O1iii0.90 (3)2.59 (3)3.115 (3)118 (3)
N2—H1N2···O2iii0.90 (3)1.92 (3)2.810 (3)174 (3)
N1—H2N1···O40.85 (3)2.08 (3)2.934 (3)175 (2)
C1—H1A···O4ii0.932.543.440 (3)164
C2—H2A···O1iii0.932.393.041 (3)127
C3—H3A···O1iv0.932.313.222 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H1O3⋯O2i1.091.402.482 (2)176
N1—H1N1⋯O3ii0.94 (3)2.00 (3)2.926 (3)168 (3)
N2—H1N2⋯O1iii0.90 (3)2.59 (3)3.115 (3)118 (3)
N2—H1N2⋯O2iii0.90 (3)1.92 (3)2.810 (3)174 (3)
N1—H2N1⋯O40.85 (3)2.08 (3)2.934 (3)175 (2)
C1—H1A⋯O4ii0.932.543.440 (3)164
C2—H2A⋯O1iii0.932.393.041 (3)127
C3—H3A⋯O1iv0.932.313.222 (3)166

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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