| Literature DB >> 21582495 |
Hoong-Kun Fun, Jain John, Samuel Robinson Jebas, T Balasubramanian.
Abstract
In the title salt, C(5)H(7)N(2) (+)·C(4)H(5)O(4) (-), the asymmetric unit comprises an amino-pyridinium cation and a hydrogen succinate anion as protonation of the aromatic N atom of the 4-amino-pyridine mol-ecule has occurred. The crystal packing is stabilized by inter-molecular O-H⋯O and N-H⋯O hydrogen bonds that lead to a two-dimensional array. Short C-H⋯O contacts are also present.Entities:
Year: 2009 PMID: 21582495 PMCID: PMC2968853 DOI: 10.1107/S1600536809006990
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H7N2+·C4H5O4− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1804 reflections |
| θ = 3.4–30.1° | |
| µ = 0.12 mm−1 | |
| β = 114.587 (4)° | Plate, colourless |
| 0.38 × 0.14 × 0.08 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 2176 independent reflections |
| Radiation source: fine-focus sealed tube | 1483 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 3.3° |
| Absorption correction: multi-scan ( | |
| 7174 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2176 reflections | (Δ/σ)max = 0.001 |
| 148 parameters | Δρmax = 0.44 e Å−3 |
| 0 restraints | Δρmin = −0.46 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | −0.1281 (3) | 0.19522 (7) | 0.2994 (3) | 0.0174 (4) | |
| O2 | −0.4204 (3) | 0.24560 (7) | 0.2995 (3) | 0.0153 (4) | |
| O3 | 0.4285 (3) | 0.34855 (7) | 0.2828 (3) | 0.0176 (4) | |
| O4 | 0.1374 (3) | 0.40250 (7) | 0.2633 (3) | 0.0189 (4) | |
| N1 | −0.2764 (4) | 0.44695 (9) | 0.2808 (3) | 0.0171 (5) | |
| N2 | −0.4551 (3) | 0.62442 (9) | 0.2152 (3) | 0.0151 (5) | |
| C1 | −0.5396 (4) | 0.52400 (10) | 0.2605 (4) | 0.0151 (5) | |
| H1A | −0.6369 | 0.4962 | 0.2769 | 0.018* | |
| C2 | −0.5929 (4) | 0.58295 (10) | 0.2401 (4) | 0.0155 (5) | |
| H2A | −0.7272 | 0.5953 | 0.2432 | 0.019* | |
| C3 | −0.2614 (4) | 0.60783 (10) | 0.2064 (4) | 0.0156 (5) | |
| H3A | −0.1701 | 0.6368 | 0.1864 | 0.019* | |
| C4 | −0.1974 (4) | 0.54940 (10) | 0.2261 (4) | 0.0159 (5) | |
| H4A | −0.0632 | 0.5387 | 0.2195 | 0.019* | |
| C5 | −0.3347 (4) | 0.50458 (10) | 0.2570 (4) | 0.0132 (5) | |
| C6 | −0.2223 (4) | 0.24291 (10) | 0.3003 (4) | 0.0124 (5) | |
| C7 | −0.1087 (4) | 0.30270 (9) | 0.3032 (4) | 0.0119 (5) | |
| H7A | −0.2001 | 0.3251 | 0.1798 | 0.014* | |
| H7B | −0.1002 | 0.3257 | 0.4220 | 0.014* | |
| C8 | 0.1262 (4) | 0.29562 (10) | 0.3127 (4) | 0.0124 (5) | |
| H8A | 0.2230 | 0.2786 | 0.4458 | 0.015* | |
| H8B | 0.1206 | 0.2674 | 0.2067 | 0.015* | |
| C9 | 0.2288 (4) | 0.35388 (10) | 0.2832 (4) | 0.0136 (5) | |
| H1O3 | 0.4901 | 0.3032 | 0.2838 | 0.016* | |
| H1N1 | −0.378 (4) | 0.4190 (13) | 0.292 (4) | 0.020 (7)* | |
| H1N2 | −0.490 (5) | 0.6636 (14) | 0.204 (4) | 0.027 (8)* | |
| H2N1 | −0.155 (5) | 0.4361 (11) | 0.273 (4) | 0.013 (6)* |
| O1 | 0.0163 (9) | 0.0058 (8) | 0.0317 (11) | −0.0004 (6) | 0.0114 (8) | −0.0008 (7) |
| O2 | 0.0120 (8) | 0.0061 (8) | 0.0294 (11) | −0.0011 (6) | 0.0102 (8) | 0.0000 (6) |
| O3 | 0.0139 (9) | 0.0067 (8) | 0.0366 (12) | 0.0003 (6) | 0.0149 (8) | 0.0014 (7) |
| O4 | 0.0182 (9) | 0.0057 (8) | 0.0358 (12) | 0.0021 (6) | 0.0141 (8) | 0.0021 (7) |
| N1 | 0.0141 (10) | 0.0079 (10) | 0.0326 (14) | 0.0014 (8) | 0.0131 (10) | 0.0008 (8) |
| N2 | 0.0170 (11) | 0.0035 (10) | 0.0235 (13) | 0.0024 (7) | 0.0071 (9) | 0.0001 (8) |
| C1 | 0.0144 (12) | 0.0104 (12) | 0.0225 (15) | −0.0008 (8) | 0.0096 (11) | 0.0020 (9) |
| C2 | 0.0142 (12) | 0.0092 (12) | 0.0240 (15) | 0.0000 (8) | 0.0089 (11) | 0.0002 (9) |
| C3 | 0.0139 (12) | 0.0131 (12) | 0.0204 (14) | −0.0026 (9) | 0.0076 (11) | 0.0010 (10) |
| C4 | 0.0125 (12) | 0.0111 (12) | 0.0255 (15) | −0.0021 (8) | 0.0093 (11) | −0.0014 (9) |
| C5 | 0.0147 (11) | 0.0092 (11) | 0.0137 (13) | −0.0011 (8) | 0.0038 (10) | −0.0012 (9) |
| C6 | 0.0128 (11) | 0.0082 (11) | 0.0162 (14) | −0.0009 (8) | 0.0060 (10) | 0.0000 (9) |
| C7 | 0.0117 (11) | 0.0067 (11) | 0.0175 (14) | 0.0002 (8) | 0.0063 (10) | 0.0005 (9) |
| C8 | 0.0115 (11) | 0.0063 (11) | 0.0205 (14) | −0.0005 (8) | 0.0076 (10) | 0.0004 (9) |
| C9 | 0.0122 (11) | 0.0107 (12) | 0.0195 (14) | −0.0002 (8) | 0.0081 (11) | −0.0001 (9) |
| O1—C6 | 1.230 (3) | C1—H1A | 0.9300 |
| O2—C6 | 1.295 (3) | C2—H2A | 0.9300 |
| O3—C9 | 1.313 (3) | C3—C4 | 1.357 (3) |
| O3—H1O3 | 1.0871 | C3—H3A | 0.9300 |
| O4—C9 | 1.217 (3) | C4—C5 | 1.420 (3) |
| N1—C5 | 1.331 (3) | C4—H4A | 0.9300 |
| N1—H1N1 | 0.94 (3) | C6—C7 | 1.522 (3) |
| N1—H2N1 | 0.86 (3) | C7—C8 | 1.519 (3) |
| N2—C3 | 1.347 (3) | C7—H7A | 0.9700 |
| N2—C2 | 1.354 (3) | C7—H7B | 0.9700 |
| N2—H1N2 | 0.90 (3) | C8—C9 | 1.516 (3) |
| C1—C2 | 1.352 (3) | C8—H8A | 0.9700 |
| C1—C5 | 1.419 (3) | C8—H8B | 0.9700 |
| C9—O3—H1O3 | 116.8 | N1—C5—C4 | 122.1 (2) |
| C5—N1—H1N1 | 118.3 (16) | C1—C5—C4 | 116.8 (2) |
| C5—N1—H2N1 | 119.4 (17) | O1—C6—O2 | 122.88 (19) |
| H1N1—N1—H2N1 | 122 (2) | O1—C6—C7 | 120.88 (19) |
| C3—N2—C2 | 120.7 (2) | O2—C6—C7 | 116.24 (18) |
| C3—N2—H1N2 | 118.4 (17) | C8—C7—C6 | 112.93 (18) |
| C2—N2—H1N2 | 120.9 (17) | C8—C7—H7A | 109.0 |
| C2—C1—C5 | 119.9 (2) | C6—C7—H7A | 109.0 |
| C2—C1—H1A | 120.1 | C8—C7—H7B | 109.0 |
| C5—C1—H1A | 120.1 | C6—C7—H7B | 109.0 |
| C1—C2—N2 | 121.4 (2) | H7A—C7—H7B | 107.8 |
| C1—C2—H2A | 119.3 | C9—C8—C7 | 113.79 (18) |
| N2—C2—H2A | 119.3 | C9—C8—H8A | 108.8 |
| N2—C3—C4 | 121.0 (2) | C7—C8—H8A | 108.8 |
| N2—C3—H3A | 119.5 | C9—C8—H8B | 108.8 |
| C4—C3—H3A | 119.5 | C7—C8—H8B | 108.8 |
| C3—C4—C5 | 120.2 (2) | H8A—C8—H8B | 107.7 |
| C3—C4—H4A | 119.9 | O4—C9—O3 | 121.5 (2) |
| C5—C4—H4A | 119.9 | O4—C9—C8 | 123.62 (19) |
| N1—C5—C1 | 121.0 (2) | O3—C9—C8 | 114.91 (18) |
| C5—C1—C2—N2 | 0.3 (4) | C3—C4—C5—C1 | 1.5 (4) |
| C3—N2—C2—C1 | 1.2 (4) | O1—C6—C7—C8 | −2.1 (3) |
| C2—N2—C3—C4 | −1.3 (4) | O2—C6—C7—C8 | 177.7 (2) |
| N2—C3—C4—C5 | −0.1 (4) | C6—C7—C8—C9 | 171.3 (2) |
| C2—C1—C5—N1 | 178.7 (2) | C7—C8—C9—O4 | 3.3 (3) |
| C2—C1—C5—C4 | −1.6 (4) | C7—C8—C9—O3 | −177.5 (2) |
| C3—C4—C5—N1 | −178.8 (2) |
| H··· | ||||
| O3—H1O3···O2i | 1.09 | 1.40 | 2.482 (2) | 176 |
| N1—H1N1···O3ii | 0.94 (3) | 2.00 (3) | 2.926 (3) | 168 (3) |
| N2—H1N2···O1iii | 0.90 (3) | 2.59 (3) | 3.115 (3) | 118 (3) |
| N2—H1N2···O2iii | 0.90 (3) | 1.92 (3) | 2.810 (3) | 174 (3) |
| N1—H2N1···O4 | 0.85 (3) | 2.08 (3) | 2.934 (3) | 175 (2) |
| C1—H1A···O4ii | 0.93 | 2.54 | 3.440 (3) | 164 |
| C2—H2A···O1iii | 0.93 | 2.39 | 3.041 (3) | 127 |
| C3—H3A···O1iv | 0.93 | 2.31 | 3.222 (3) | 166 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O3—H1 | 1.09 | 1.40 | 2.482 (2) | 176 |
| N1—H1 | 0.94 (3) | 2.00 (3) | 2.926 (3) | 168 (3) |
| N2—H1 | 0.90 (3) | 2.59 (3) | 3.115 (3) | 118 (3) |
| N2—H1 | 0.90 (3) | 1.92 (3) | 2.810 (3) | 174 (3) |
| N1—H2 | 0.85 (3) | 2.08 (3) | 2.934 (3) | 175 (2) |
| C1—H1 | 0.93 | 2.54 | 3.440 (3) | 164 |
| C2—H2 | 0.93 | 2.39 | 3.041 (3) | 127 |
| C3—H3 | 0.93 | 2.31 | 3.222 (3) | 166 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .