Literature DB >> 21582263

(4S,5R,6R)-Methyl 4-hydr-oxy-4,5-iso-propyl-idenedioxy-4,5,6,7-tetra-hydro-1,2,3-triazolo[1,5-a]pyridine-3-carboxyl-ate.

Sarah F Jenkinson, Jennifer R Fenton, K Victoria Booth, George W J Fleet, David J Watkin.   

Abstract

X-ray crystallography confirmed the structure of the title triazole, C(11)H(15)N(3)O(5), formed from a single-step reaction of a sugar azide with a brominated ylid. The absolute configuration was determined by the use of d-ribose as the starting material. The six-membered ring is in a half-chair conformation. The crystal structure exists as chains of O-H⋯O hydrogen-bonded moleclues running parallel to the b axis.

Entities:  

Year:  2009        PMID: 21582263      PMCID: PMC2968499          DOI: 10.1107/S1600536809006357

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For imino sugars, see: Asano et al. (2000 ▶); Watson et al. (2001 ▶). For sugar tetra­zoles, see: Brandstetter et al. (1995 ▶); Davis et al. (1995 ▶); Ermert et al. (1991 ▶). For sugar triazoles, see: Caravano et al. (2007 ▶); Krivopalov & Shkurko (2005 ▶); Krulle et al. (1997 ▶); Marco-Contelles & Rodriguez-Fernandez (2001 ▶, 2002 ▶); Oikonomakos (2002 ▶); Tatsuta et al. (1996 ▶). For related literature, see: Görbitz (1999 ▶); Larson (1970 ▶).

Experimental

Crystal data

C11H15N3O5 M = 269.26 Monoclinic, a = 8.0587 (3) Å b = 7.3797 (3) Å c = 10.9785 (5) Å β = 96.2740 (18)° V = 648.99 (5) Å3 Z = 2 Mo Kα radiation μ = 0.11 mm−1 T = 150 K 0.60 × 0.15 × 0.03 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997 ▶) T min = 0.82, T max = 1.00 (expected range = 0.817–0.997) 9525 measured reflections 1595 independent reflections 1219 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.082 S = 0.96 1595 reflections 173 parameters 1 restraint H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.31 e Å−3 Data collection: COLLECT (Nonius, 2001 ▶).; cell refinement: DENZO/SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003 ▶); molecular graphics: CAMERON (Watkin et al., 1996 ▶); software used to prepare material for publication: CRYSTALS. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809006357/lh2778sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809006357/lh2778Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H15N3O5F(000) = 284
Mr = 269.26Dx = 1.378 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1565 reflections
a = 8.0587 (3) Åθ = 5–27°
b = 7.3797 (3) ŵ = 0.11 mm1
c = 10.9785 (5) ÅT = 150 K
β = 96.2740 (18)°Plate, colourless
V = 648.99 (5) Å30.60 × 0.15 × 0.03 mm
Z = 2
Nonius KappaCCD diffractometer1219 reflections with I > 2σ(I)
graphiteRint = 0.059
ω scansθmax = 27.5°, θmin = 5.2°
Absorption correction: multi-scan (DENZO/SCALEPACK; Otwinowski & Minor, 1997)h = −10→10
Tmin = 0.82, Tmax = 1.00k = −9→9
9525 measured reflectionsl = −14→14
1595 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037 Method = Modified Sheldrick w = 1/[σ2(F2) + (0.04P)2 + 0.06P], where P = [max(Fo2,0) + 2Fc2]/3
wR(F2) = 0.082(Δ/σ)max = 0.0001
S = 0.97Δρmax = 0.30 e Å3
1595 reflectionsΔρmin = −0.31 e Å3
173 parametersExtinction correction: Larson (1970), Equation 22
1 restraintExtinction coefficient: 120 (30)
Primary atom site location: structure-invariant direct methods
xyzUiso*/Ueq
O10.2044 (2)0.3385 (2)0.12370 (17)0.0348
C20.3680 (3)0.2921 (3)0.0939 (2)0.0259
C30.4700 (3)0.4559 (3)0.14365 (19)0.0263
O40.3535 (2)0.6018 (2)0.12971 (16)0.0369
C50.1853 (3)0.5296 (3)0.1071 (3)0.0371
C60.1173 (3)0.5757 (4)−0.0230 (3)0.0481
C70.0820 (4)0.5983 (5)0.2022 (3)0.0711
C80.5404 (3)0.4306 (3)0.27502 (19)0.0274
N90.5115 (2)0.2809 (3)0.33823 (15)0.0314
N100.5960 (3)0.2829 (4)0.45255 (16)0.0404
N110.6780 (2)0.4367 (3)0.46271 (17)0.0393
C120.6470 (3)0.5312 (3)0.35555 (19)0.0301
C130.7152 (3)0.7105 (4)0.3339 (2)0.0347
O140.6759 (2)0.7985 (3)0.24224 (16)0.0410
O150.8253 (2)0.7650 (3)0.42672 (17)0.0493
C160.8993 (4)0.9424 (5)0.4125 (3)0.0619
C170.4111 (3)0.1253 (4)0.2922 (2)0.0340
C180.4225 (3)0.1151 (3)0.1552 (2)0.0282
O190.3191 (2)−0.0250 (2)0.10143 (15)0.0345
H210.37160.28230.00300.0326*
H310.56280.48000.09230.0335*
H620.12130.7081−0.03060.0684*
H610.00130.5339−0.03900.0679*
H630.18730.5166−0.07910.0683*
H720.07600.72960.19460.1122*
H71−0.02940.54660.18980.1121*
H730.13670.56580.28260.1119*
H1630.99990.95060.47000.0913*
H1620.92840.95530.32940.0911*
H1610.81931.03530.43040.0913*
H1720.29300.14230.30740.0432*
H1710.45920.01510.33270.0435*
H1810.54170.09150.14250.0336*
H1910.3489−0.13270.11660.0521*
U11U22U33U12U13U23
O10.0270 (8)0.0198 (9)0.0582 (11)0.0004 (7)0.0067 (7)0.0020 (7)
C20.0241 (11)0.0212 (11)0.0325 (11)0.0008 (10)0.0032 (8)−0.0010 (11)
C30.0298 (11)0.0224 (12)0.0259 (11)0.0021 (10)−0.0007 (9)0.0011 (10)
O40.0340 (9)0.0205 (9)0.0524 (11)0.0020 (8)−0.0125 (7)−0.0004 (8)
C50.0267 (12)0.0178 (12)0.0658 (17)0.0013 (10)0.0007 (11)−0.0001 (12)
C60.0357 (13)0.0268 (14)0.0762 (19)−0.0026 (12)−0.0191 (13)0.0064 (14)
C70.075 (2)0.041 (2)0.105 (3)0.0097 (18)0.0425 (19)−0.0053 (19)
C80.0270 (11)0.0247 (12)0.0305 (11)0.0084 (11)0.0040 (9)−0.0028 (11)
N90.0372 (10)0.0314 (11)0.0256 (9)0.0035 (10)0.0040 (8)0.0024 (9)
N100.0491 (12)0.0475 (14)0.0241 (9)0.0073 (12)0.0023 (8)0.0009 (11)
N110.0427 (11)0.0465 (14)0.0279 (10)0.0110 (12)−0.0003 (8)−0.0067 (11)
C120.0294 (11)0.0315 (14)0.0283 (12)0.0091 (10)−0.0011 (9)−0.0061 (11)
C130.0262 (11)0.0346 (14)0.0413 (14)0.0068 (11)−0.0055 (10)−0.0129 (12)
O140.0382 (9)0.0298 (10)0.0524 (11)0.0004 (9)−0.0062 (8)−0.0029 (10)
O150.0406 (10)0.0451 (13)0.0576 (11)0.0030 (9)−0.0157 (8)−0.0195 (10)
C160.0454 (15)0.0440 (19)0.091 (2)−0.0055 (16)−0.0167 (14)−0.0262 (18)
C170.0404 (13)0.0262 (13)0.0366 (13)0.0005 (11)0.0099 (10)0.0045 (11)
C180.0313 (11)0.0196 (12)0.0335 (12)0.0020 (10)0.0030 (9)0.0005 (10)
O190.0413 (9)0.0137 (8)0.0481 (10)0.0003 (7)0.0036 (7)−0.0011 (7)
O1—C21.434 (3)C8—C121.380 (3)
O1—C51.429 (3)N9—N101.361 (3)
C2—C31.529 (3)N9—C171.463 (3)
C2—C181.512 (3)N10—N111.312 (3)
C2—H211.004N11—C121.367 (3)
C3—O41.426 (3)C12—C131.462 (4)
C3—C81.503 (3)C13—O141.211 (3)
C3—H311.000C13—O151.338 (3)
O4—C51.452 (3)O15—C161.454 (4)
C5—C61.512 (4)C16—H1630.973
C5—C71.494 (4)C16—H1620.971
C6—H620.981C16—H1610.976
C6—H610.982C17—C181.519 (3)
C6—H630.982C17—H1720.992
C7—H720.973C17—H1710.986
C7—H710.971C18—O191.416 (3)
C7—H730.973C18—H1811.001
C8—N91.339 (3)O19—H1910.842
C2—O1—C5107.18 (19)C3—C8—C12133.8 (2)
O1—C2—C3101.66 (18)N9—C8—C12104.07 (19)
O1—C2—C18109.52 (18)C8—N9—N10111.8 (2)
C3—C2—C18113.92 (17)C8—N9—C17126.16 (18)
O1—C2—H21111.8N10—N9—C17122.0 (2)
C3—C2—H21109.8N9—N10—N11106.53 (19)
C18—C2—H21110.0N10—N11—C12108.96 (19)
C2—C3—O4103.68 (16)C8—C12—N11108.7 (2)
C2—C3—C8112.1 (2)C8—C12—C13127.0 (2)
O4—C3—C8111.83 (18)N11—C12—C13124.4 (2)
C2—C3—H31110.2C12—C13—O14123.5 (2)
O4—C3—H31109.2C12—C13—O15112.2 (2)
C8—C3—H31109.6O14—C13—O15124.3 (3)
C3—O4—C5109.44 (17)C13—O15—C16115.8 (2)
O4—C5—O1104.75 (19)O15—C16—H163108.0
O4—C5—C6108.3 (2)O15—C16—H162109.4
O1—C5—C6111.5 (2)H163—C16—H162109.5
O4—C5—C7109.7 (2)O15—C16—H161108.8
O1—C5—C7107.8 (2)H163—C16—H161110.4
C6—C5—C7114.3 (2)H162—C16—H161110.6
C5—C6—H62107.0N9—C17—C18106.86 (19)
C5—C6—H61109.7N9—C17—H172110.3
H62—C6—H61109.7C18—C17—H172109.6
C5—C6—H63108.6N9—C17—H171108.5
H62—C6—H63111.3C18—C17—H171110.0
H61—C6—H63110.4H172—C17—H171111.4
C5—C7—H72107.7C17—C18—C2110.60 (19)
C5—C7—H71110.2C17—C18—O19110.65 (19)
H72—C7—H71110.0C2—C18—O19108.43 (17)
C5—C7—H73108.6C17—C18—H181108.0
H72—C7—H73109.7C2—C18—H181108.9
H71—C7—H73110.5O19—C18—H181110.2
C3—C8—N9122.1 (2)C18—O19—H191117.7
D—H···AD—HH···AD···AD—H···A
C3—H31···O19i1.002.423.339 (4)152
C16—H161···N10ii0.982.593.567 (4)174
O19—H191···O4iii0.841.962.782 (4)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O19—H191⋯O4i0.841.962.782 (4)163

Symmetry code: (i) .

  5 in total

Review 1.  Polyhydroxylated alkaloids -- natural occurrence and therapeutic applications.

Authors:  A A Watson; G W Fleet; N Asano; R J Molyneux; R J Nash
Journal:  Phytochemistry       Date:  2001-02       Impact factor: 4.072

Review 2.  Glycogen phosphorylase as a molecular target for type 2 diabetes therapy.

Authors:  Nikos G Oikonomakos
Journal:  Curr Protein Pept Sci       Date:  2002-12       Impact factor: 3.272

3.  Synthesis and glycosidase inhibitory activities of nagstatin triazole analogs.

Authors:  K Tatsuta; Y Ikeda; S Miura
Journal:  J Antibiot (Tokyo)       Date:  1996-08       Impact factor: 2.649

4.  Free-radical cyclizations onto differently substituted 1,2,3-triazoles installed in sugar templates.

Authors:  J Marco-Contelles; M Rodríguez-Fernández
Journal:  J Org Chem       Date:  2001-06-01       Impact factor: 4.354

5.  What is the best crystal size for collection of X-ray data? Refinement of the structure of glycyl-L-serine based on data from a very large crystal.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01
  5 in total

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