| Literature DB >> 21582263 |
Sarah F Jenkinson, Jennifer R Fenton, K Victoria Booth, George W J Fleet, David J Watkin.
Abstract
X-ray crystallography confirmed the structure of the title triazole, C(11)H(15)N(3)O(5), formed from a single-step reaction of a sugar azide with a brominated ylid. The absolute configuration was determined by the use of d-ribose as the starting material. The six-membered ring is in a half-chair conformation. The crystal structure exists as chains of O-H⋯O hydrogen-bonded moleclues running parallel to the b axis.Entities:
Year: 2009 PMID: 21582263 PMCID: PMC2968499 DOI: 10.1107/S1600536809006357
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H15N3O5 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1565 reflections |
| θ = 5–27° | |
| µ = 0.11 mm−1 | |
| β = 96.2740 (18)° | Plate, colourless |
| 0.60 × 0.15 × 0.03 mm | |
| Nonius KappaCCD diffractometer | 1219 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 5.2° |
| Absorption correction: multi-scan ( | |
| 9525 measured reflections | |
| 1595 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| Method = Modified Sheldrick
| |
| (Δ/σ)max = 0.0001 | |
| Δρmax = 0.30 e Å−3 | |
| 1595 reflections | Δρmin = −0.31 e Å−3 |
| 173 parameters | Extinction correction: Larson (1970), Equation 22 |
| 1 restraint | Extinction coefficient: 120 (30) |
| Primary atom site location: structure-invariant direct methods |
| O1 | 0.2044 (2) | 0.3385 (2) | 0.12370 (17) | 0.0348 | |
| C2 | 0.3680 (3) | 0.2921 (3) | 0.0939 (2) | 0.0259 | |
| C3 | 0.4700 (3) | 0.4559 (3) | 0.14365 (19) | 0.0263 | |
| O4 | 0.3535 (2) | 0.6018 (2) | 0.12971 (16) | 0.0369 | |
| C5 | 0.1853 (3) | 0.5296 (3) | 0.1071 (3) | 0.0371 | |
| C6 | 0.1173 (3) | 0.5757 (4) | −0.0230 (3) | 0.0481 | |
| C7 | 0.0820 (4) | 0.5983 (5) | 0.2022 (3) | 0.0711 | |
| C8 | 0.5404 (3) | 0.4306 (3) | 0.27502 (19) | 0.0274 | |
| N9 | 0.5115 (2) | 0.2809 (3) | 0.33823 (15) | 0.0314 | |
| N10 | 0.5960 (3) | 0.2829 (4) | 0.45255 (16) | 0.0404 | |
| N11 | 0.6780 (2) | 0.4367 (3) | 0.46271 (17) | 0.0393 | |
| C12 | 0.6470 (3) | 0.5312 (3) | 0.35555 (19) | 0.0301 | |
| C13 | 0.7152 (3) | 0.7105 (4) | 0.3339 (2) | 0.0347 | |
| O14 | 0.6759 (2) | 0.7985 (3) | 0.24224 (16) | 0.0410 | |
| O15 | 0.8253 (2) | 0.7650 (3) | 0.42672 (17) | 0.0493 | |
| C16 | 0.8993 (4) | 0.9424 (5) | 0.4125 (3) | 0.0619 | |
| C17 | 0.4111 (3) | 0.1253 (4) | 0.2922 (2) | 0.0340 | |
| C18 | 0.4225 (3) | 0.1151 (3) | 0.1552 (2) | 0.0282 | |
| O19 | 0.3191 (2) | −0.0250 (2) | 0.10143 (15) | 0.0345 | |
| H21 | 0.3716 | 0.2823 | 0.0030 | 0.0326* | |
| H31 | 0.5628 | 0.4800 | 0.0923 | 0.0335* | |
| H62 | 0.1213 | 0.7081 | −0.0306 | 0.0684* | |
| H61 | 0.0013 | 0.5339 | −0.0390 | 0.0679* | |
| H63 | 0.1873 | 0.5166 | −0.0791 | 0.0683* | |
| H72 | 0.0760 | 0.7296 | 0.1946 | 0.1122* | |
| H71 | −0.0294 | 0.5466 | 0.1898 | 0.1121* | |
| H73 | 0.1367 | 0.5658 | 0.2826 | 0.1119* | |
| H163 | 0.9999 | 0.9506 | 0.4700 | 0.0913* | |
| H162 | 0.9284 | 0.9553 | 0.3294 | 0.0911* | |
| H161 | 0.8193 | 1.0353 | 0.4304 | 0.0913* | |
| H172 | 0.2930 | 0.1423 | 0.3074 | 0.0432* | |
| H171 | 0.4592 | 0.0151 | 0.3327 | 0.0435* | |
| H181 | 0.5417 | 0.0915 | 0.1425 | 0.0336* | |
| H191 | 0.3489 | −0.1327 | 0.1166 | 0.0521* |
| O1 | 0.0270 (8) | 0.0198 (9) | 0.0582 (11) | 0.0004 (7) | 0.0067 (7) | 0.0020 (7) |
| C2 | 0.0241 (11) | 0.0212 (11) | 0.0325 (11) | 0.0008 (10) | 0.0032 (8) | −0.0010 (11) |
| C3 | 0.0298 (11) | 0.0224 (12) | 0.0259 (11) | 0.0021 (10) | −0.0007 (9) | 0.0011 (10) |
| O4 | 0.0340 (9) | 0.0205 (9) | 0.0524 (11) | 0.0020 (8) | −0.0125 (7) | −0.0004 (8) |
| C5 | 0.0267 (12) | 0.0178 (12) | 0.0658 (17) | 0.0013 (10) | 0.0007 (11) | −0.0001 (12) |
| C6 | 0.0357 (13) | 0.0268 (14) | 0.0762 (19) | −0.0026 (12) | −0.0191 (13) | 0.0064 (14) |
| C7 | 0.075 (2) | 0.041 (2) | 0.105 (3) | 0.0097 (18) | 0.0425 (19) | −0.0053 (19) |
| C8 | 0.0270 (11) | 0.0247 (12) | 0.0305 (11) | 0.0084 (11) | 0.0040 (9) | −0.0028 (11) |
| N9 | 0.0372 (10) | 0.0314 (11) | 0.0256 (9) | 0.0035 (10) | 0.0040 (8) | 0.0024 (9) |
| N10 | 0.0491 (12) | 0.0475 (14) | 0.0241 (9) | 0.0073 (12) | 0.0023 (8) | 0.0009 (11) |
| N11 | 0.0427 (11) | 0.0465 (14) | 0.0279 (10) | 0.0110 (12) | −0.0003 (8) | −0.0067 (11) |
| C12 | 0.0294 (11) | 0.0315 (14) | 0.0283 (12) | 0.0091 (10) | −0.0011 (9) | −0.0061 (11) |
| C13 | 0.0262 (11) | 0.0346 (14) | 0.0413 (14) | 0.0068 (11) | −0.0055 (10) | −0.0129 (12) |
| O14 | 0.0382 (9) | 0.0298 (10) | 0.0524 (11) | 0.0004 (9) | −0.0062 (8) | −0.0029 (10) |
| O15 | 0.0406 (10) | 0.0451 (13) | 0.0576 (11) | 0.0030 (9) | −0.0157 (8) | −0.0195 (10) |
| C16 | 0.0454 (15) | 0.0440 (19) | 0.091 (2) | −0.0055 (16) | −0.0167 (14) | −0.0262 (18) |
| C17 | 0.0404 (13) | 0.0262 (13) | 0.0366 (13) | 0.0005 (11) | 0.0099 (10) | 0.0045 (11) |
| C18 | 0.0313 (11) | 0.0196 (12) | 0.0335 (12) | 0.0020 (10) | 0.0030 (9) | 0.0005 (10) |
| O19 | 0.0413 (9) | 0.0137 (8) | 0.0481 (10) | 0.0003 (7) | 0.0036 (7) | −0.0011 (7) |
| O1—C2 | 1.434 (3) | C8—C12 | 1.380 (3) |
| O1—C5 | 1.429 (3) | N9—N10 | 1.361 (3) |
| C2—C3 | 1.529 (3) | N9—C17 | 1.463 (3) |
| C2—C18 | 1.512 (3) | N10—N11 | 1.312 (3) |
| C2—H21 | 1.004 | N11—C12 | 1.367 (3) |
| C3—O4 | 1.426 (3) | C12—C13 | 1.462 (4) |
| C3—C8 | 1.503 (3) | C13—O14 | 1.211 (3) |
| C3—H31 | 1.000 | C13—O15 | 1.338 (3) |
| O4—C5 | 1.452 (3) | O15—C16 | 1.454 (4) |
| C5—C6 | 1.512 (4) | C16—H163 | 0.973 |
| C5—C7 | 1.494 (4) | C16—H162 | 0.971 |
| C6—H62 | 0.981 | C16—H161 | 0.976 |
| C6—H61 | 0.982 | C17—C18 | 1.519 (3) |
| C6—H63 | 0.982 | C17—H172 | 0.992 |
| C7—H72 | 0.973 | C17—H171 | 0.986 |
| C7—H71 | 0.971 | C18—O19 | 1.416 (3) |
| C7—H73 | 0.973 | C18—H181 | 1.001 |
| C8—N9 | 1.339 (3) | O19—H191 | 0.842 |
| C2—O1—C5 | 107.18 (19) | C3—C8—C12 | 133.8 (2) |
| O1—C2—C3 | 101.66 (18) | N9—C8—C12 | 104.07 (19) |
| O1—C2—C18 | 109.52 (18) | C8—N9—N10 | 111.8 (2) |
| C3—C2—C18 | 113.92 (17) | C8—N9—C17 | 126.16 (18) |
| O1—C2—H21 | 111.8 | N10—N9—C17 | 122.0 (2) |
| C3—C2—H21 | 109.8 | N9—N10—N11 | 106.53 (19) |
| C18—C2—H21 | 110.0 | N10—N11—C12 | 108.96 (19) |
| C2—C3—O4 | 103.68 (16) | C8—C12—N11 | 108.7 (2) |
| C2—C3—C8 | 112.1 (2) | C8—C12—C13 | 127.0 (2) |
| O4—C3—C8 | 111.83 (18) | N11—C12—C13 | 124.4 (2) |
| C2—C3—H31 | 110.2 | C12—C13—O14 | 123.5 (2) |
| O4—C3—H31 | 109.2 | C12—C13—O15 | 112.2 (2) |
| C8—C3—H31 | 109.6 | O14—C13—O15 | 124.3 (3) |
| C3—O4—C5 | 109.44 (17) | C13—O15—C16 | 115.8 (2) |
| O4—C5—O1 | 104.75 (19) | O15—C16—H163 | 108.0 |
| O4—C5—C6 | 108.3 (2) | O15—C16—H162 | 109.4 |
| O1—C5—C6 | 111.5 (2) | H163—C16—H162 | 109.5 |
| O4—C5—C7 | 109.7 (2) | O15—C16—H161 | 108.8 |
| O1—C5—C7 | 107.8 (2) | H163—C16—H161 | 110.4 |
| C6—C5—C7 | 114.3 (2) | H162—C16—H161 | 110.6 |
| C5—C6—H62 | 107.0 | N9—C17—C18 | 106.86 (19) |
| C5—C6—H61 | 109.7 | N9—C17—H172 | 110.3 |
| H62—C6—H61 | 109.7 | C18—C17—H172 | 109.6 |
| C5—C6—H63 | 108.6 | N9—C17—H171 | 108.5 |
| H62—C6—H63 | 111.3 | C18—C17—H171 | 110.0 |
| H61—C6—H63 | 110.4 | H172—C17—H171 | 111.4 |
| C5—C7—H72 | 107.7 | C17—C18—C2 | 110.60 (19) |
| C5—C7—H71 | 110.2 | C17—C18—O19 | 110.65 (19) |
| H72—C7—H71 | 110.0 | C2—C18—O19 | 108.43 (17) |
| C5—C7—H73 | 108.6 | C17—C18—H181 | 108.0 |
| H72—C7—H73 | 109.7 | C2—C18—H181 | 108.9 |
| H71—C7—H73 | 110.5 | O19—C18—H181 | 110.2 |
| C3—C8—N9 | 122.1 (2) | C18—O19—H191 | 117.7 |
| H··· | ||||
| C3—H31···O19i | 1.00 | 2.42 | 3.339 (4) | 152 |
| C16—H161···N10ii | 0.98 | 2.59 | 3.567 (4) | 174 |
| O19—H191···O4iii | 0.84 | 1.96 | 2.782 (4) | 163 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O19—H191⋯O4i | 0.84 | 1.96 | 2.782 (4) | 163 |
Symmetry code: (i) .