Literature DB >> 21582217

(E)-2-[(2-Hydroxy-ethyl)iminiometh-yl]-6-methoxy-phenolate.

Guo-Xia Tan, Xi-Cheng Liu.   

Abstract

The title Schiff base compound, C(10)H(13)NO(3), obtained by the reaction of 2-hydr-oxy-3-methoxy-benzaldehyde and 2-amino-ethanol in methanol solution, crystallizes in a zwitterionic form, in which the mol-ecule adopts a trans configuration about the central C=N bond. An intra-molecular N-H⋯O hydrogen bond occurs. In the crystal structure, mol-ecules are linked into chains by inter-molecular O-H⋯O hydrogen bonding.

Entities:  

Year:  2009        PMID: 21582217      PMCID: PMC2968608          DOI: 10.1107/S1600536809005297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Cui et al. (1999 ▶); Dong et al. (2007 ▶); Li et al. (2005 ▶); Ng (2008 ▶); Oshio et al. (2003 ▶); Sun et al. (2006 ▶). For reference structural data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C10H13NO3 M = 195.21 Orthorhombic, a = 14.148 (6) Å b = 6.587 (3) Å c = 10.760 (4) Å V = 1002.8 (7) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.30 × 0.30 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.974, T max = 0.991 7345 measured reflections 1041 independent reflections 923 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.084 S = 1.07 1041 reflections 127 parameters 1 restraint H-atom parameters constrained Δρmax = 0.09 e Å−3 Δρmin = −0.15 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809005297/hb2911sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005297/hb2911Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H13NO3F(000) = 416
Mr = 195.21Dx = 1.293 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 1828 reflections
a = 14.148 (6) Åθ = 2.9–20.4°
b = 6.587 (3) ŵ = 0.10 mm1
c = 10.760 (4) ÅT = 295 K
V = 1002.8 (7) Å3Block, yellow
Z = 40.30 × 0.30 × 0.12 mm
Bruker APEX CCD diffractometer1041 independent reflections
Radiation source: fine-focus sealed tube923 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 26.0°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −17→17
Tmin = 0.974, Tmax = 0.991k = −8→8
7345 measured reflectionsl = −12→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.084H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0473P)2 + 0.0337P] where P = (Fo2 + 2Fc2)/3
1041 reflections(Δ/σ)max < 0.001
127 parametersΔρmax = 0.09 e Å3
1 restraintΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.53278 (16)0.7444 (3)0.0860 (2)0.0408 (5)
C20.57651 (16)0.9338 (3)0.0535 (2)0.0451 (6)
C30.69788 (18)1.1717 (4)0.1022 (3)0.0718 (9)
H3A0.65191.27630.11640.108*
H3B0.72071.18070.01830.108*
H3C0.74971.18850.15880.108*
C40.5396 (2)1.0535 (4)−0.0390 (3)0.0557 (7)
H40.56801.1776−0.05660.067*
C50.4599 (2)0.9927 (5)−0.1078 (3)0.0625 (8)
H50.43661.0750−0.17100.075*
C60.41744 (18)0.8135 (4)−0.0814 (3)0.0570 (7)
H60.36550.7718−0.12780.068*
C70.45145 (15)0.6891 (4)0.0160 (2)0.0436 (5)
C80.39971 (16)0.5130 (4)0.0485 (2)0.0460 (6)
H80.34790.4790−0.00060.055*
C90.36073 (17)0.2262 (4)0.1804 (3)0.0535 (6)
H9A0.40050.10910.19610.064*
H9B0.31730.19150.11400.064*
C100.30532 (16)0.2758 (4)0.2962 (3)0.0529 (6)
H10A0.27170.15530.32320.064*
H10B0.34900.31370.36170.064*
N10.41934 (14)0.3958 (3)0.1415 (2)0.0478 (5)
H10.47010.41990.18290.057*
O10.56592 (11)0.6322 (2)0.17429 (18)0.0486 (4)
O20.65545 (11)0.9784 (3)0.1213 (2)0.0564 (5)
O30.23996 (12)0.4345 (2)0.2785 (2)0.0584 (5)
H30.19460.39240.23870.088*
U11U22U33U12U13U23
C10.0358 (11)0.0387 (12)0.0478 (13)0.0046 (9)0.0063 (10)−0.0074 (11)
C20.0393 (12)0.0407 (13)0.0553 (16)0.0030 (10)0.0127 (11)−0.0106 (12)
C30.0623 (17)0.0421 (15)0.111 (3)−0.0143 (14)0.0175 (19)−0.0154 (16)
C40.0608 (17)0.0435 (14)0.0629 (17)0.0038 (13)0.0206 (15)0.0050 (13)
C50.0670 (18)0.0703 (19)0.0502 (16)0.0090 (15)0.0064 (14)0.0132 (15)
C60.0507 (14)0.0726 (18)0.0477 (15)0.0022 (13)−0.0017 (12)0.0014 (14)
C70.0378 (12)0.0484 (13)0.0445 (13)0.0014 (11)0.0028 (10)−0.0071 (12)
C80.0341 (12)0.0521 (14)0.0520 (14)0.0004 (10)−0.0026 (11)−0.0117 (12)
C90.0420 (13)0.0424 (13)0.0760 (18)−0.0020 (10)−0.0002 (14)0.0002 (13)
C100.0422 (12)0.0533 (15)0.0633 (16)0.0033 (11)−0.0071 (12)0.0138 (13)
N10.0354 (10)0.0481 (12)0.0600 (14)−0.0036 (9)−0.0025 (9)−0.0050 (11)
O10.0400 (8)0.0440 (9)0.0619 (11)−0.0040 (7)−0.0082 (8)0.0003 (9)
O20.0436 (9)0.0433 (9)0.0822 (14)−0.0083 (8)0.0020 (9)−0.0062 (9)
O30.0410 (9)0.0591 (10)0.0750 (13)0.0088 (9)−0.0069 (9)−0.0038 (10)
C1—O11.291 (3)C6—H60.9300
C1—C71.423 (3)C7—C81.416 (3)
C1—C21.436 (3)C8—N11.294 (3)
C2—O21.366 (3)C8—H80.9300
C2—C41.373 (4)C9—N11.453 (3)
C3—O21.422 (3)C9—C101.508 (4)
C3—H3A0.9600C9—H9A0.9700
C3—H3B0.9600C9—H9B0.9700
C3—H3C0.9600C10—O31.409 (3)
C4—C51.407 (4)C10—H10A0.9700
C4—H40.9300C10—H10B0.9700
C5—C61.355 (4)N1—H10.8600
C5—H50.9300O3—H30.8200
C6—C71.415 (4)
O1—C1—C7122.5 (2)C6—C7—C1121.3 (2)
O1—C1—C2121.3 (2)C8—C7—C1119.8 (2)
C7—C1—C2116.2 (2)N1—C8—C7124.6 (2)
O2—C2—C4125.1 (2)N1—C8—H8117.7
O2—C2—C1114.1 (2)C7—C8—H8117.7
C4—C2—C1120.8 (2)N1—C9—C10111.6 (2)
O2—C3—H3A109.5N1—C9—H9A109.3
O2—C3—H3B109.5C10—C9—H9A109.3
H3A—C3—H3B109.5N1—C9—H9B109.3
O2—C3—H3C109.5C10—C9—H9B109.3
H3A—C3—H3C109.5H9A—C9—H9B108.0
H3B—C3—H3C109.5O3—C10—C9113.0 (2)
C2—C4—C5121.5 (2)O3—C10—H10A109.0
C2—C4—H4119.2C9—C10—H10A109.0
C5—C4—H4119.2O3—C10—H10B109.0
C6—C5—C4119.5 (3)C9—C10—H10B109.0
C6—C5—H5120.2H10A—C10—H10B107.8
C4—C5—H5120.2C8—N1—C9124.0 (2)
C5—C6—C7120.6 (3)C8—N1—H1118.0
C5—C6—H6119.7C9—N1—H1118.0
C7—C6—H6119.7C2—O2—C3117.4 (2)
C6—C7—C8118.8 (2)C10—O3—H3109.5
O1—C1—C2—O21.6 (3)C2—C1—C7—C61.1 (3)
C7—C1—C2—O2−178.65 (19)O1—C1—C7—C84.8 (3)
O1—C1—C2—C4−178.8 (2)C2—C1—C7—C8−175.0 (2)
C7—C1—C2—C41.0 (3)C6—C7—C8—N1−174.5 (2)
O2—C2—C4—C5177.5 (2)C1—C7—C8—N11.8 (3)
C1—C2—C4—C5−2.1 (3)N1—C9—C10—O363.7 (3)
C2—C4—C5—C61.0 (4)C7—C8—N1—C9174.2 (2)
C4—C5—C6—C71.2 (4)C10—C9—N1—C8−104.5 (3)
C5—C6—C7—C8174.0 (2)C4—C2—O2—C35.8 (3)
C5—C6—C7—C1−2.2 (4)C1—C2—O2—C3−174.6 (2)
O1—C1—C7—C6−179.1 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.861.952.617 (2)134
O3—H3···O1i0.821.952.741 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O10.861.952.617 (2)134
O3—H3⋯O1i0.821.952.741 (3)161

Symmetry code: (i) .

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