Literature DB >> 21579178

4,4'-Bipyridine-2,2'-(1,2-phenylene-dioxy)diacetic acid-water (1/1/1).

Feng-Quan Bu, Ying Wu, Ling Ye, Peng Yan.   

Abstract

In the title 1:1:1 adduct, C(10)H(8)N(2)·C(10)H(10)O(6)·H(2)O, the dihedral angle between the rings of the 4,4-bipyridine molecule is 10.981 (8)°. In the crystal, O-H⋯O and O-H⋯N hydrogen bonds link the mol-ecules into a zigzag chain structure.

Entities:  

Year:  2010        PMID: 21579178      PMCID: PMC2979216          DOI: 10.1107/S1600536810013905

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 1,2-phenyl­enedi(oxyacetic acid), see: Mirci (1990 ▶). For related structures, see: Soleimannejad et al. (2009 ▶); Yu et al. (2006 ▶). For hydrogen-bonding motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C10H8N2·C10H10O6·H2O M = 400.38 Monoclinic, a = 11.566 (5) Å b = 9.712 (5) Å c = 16.810 (7) Å β = 90.81 (2)° V = 1888.2 (15) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 291 K 0.20 × 0.18 × 0.12 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.979, T max = 0.987 18105 measured reflections 4306 independent reflections 2654 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.113 S = 0.97 4306 reflections 262 parameters H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: RAPID-AUTO (Rigaku, 1998 ▶); cell refinement: RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810013905/dn2556sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810013905/dn2556Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H8N2·C10H10O6·H2OF(000) = 840
Mr = 400.38Dx = 1.408 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 11161 reflections
a = 11.566 (5) Åθ = 3.0–27.5°
b = 9.712 (5) ŵ = 0.11 mm1
c = 16.810 (7) ÅT = 291 K
β = 90.81 (2)°Rod, colorless
V = 1888.2 (15) Å30.20 × 0.18 × 0.12 mm
Z = 4
Rigaku R-AXIS RAPID diffractometer4306 independent reflections
Radiation source: fine-focus sealed tube2654 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scanθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −15→14
Tmin = 0.979, Tmax = 0.987k = −12→12
18105 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.113H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0647P)2] where P = (Fo2 + 2Fc2)/3
4306 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.60888 (10)0.06435 (13)0.44070 (7)0.0574 (3)
C10.59235 (13)−0.04189 (17)0.39244 (9)0.0616 (4)
H10.5467−0.02930.34700.074*
C20.63933 (12)−0.16976 (16)0.40627 (8)0.0588 (4)
H20.6265−0.24060.37000.071*
C30.70588 (11)−0.19349 (14)0.47429 (8)0.0462 (3)
C40.72238 (12)−0.08127 (15)0.52468 (9)0.0574 (4)
H40.7662−0.09100.57120.069*
C50.67402 (13)0.04364 (16)0.50574 (9)0.0613 (4)
H50.68730.11750.53990.074*
C60.75714 (11)−0.33068 (14)0.49263 (8)0.0460 (3)
C70.72463 (14)−0.44768 (16)0.45093 (9)0.0662 (4)
H70.6697−0.44160.41010.079*
C80.77316 (14)−0.57246 (17)0.46966 (10)0.0672 (4)
H80.7498−0.64930.44060.081*
C90.88302 (13)−0.47824 (16)0.56821 (9)0.0609 (4)
H90.9375−0.48790.60910.073*
C100.83819 (12)−0.34962 (15)0.55282 (9)0.0579 (4)
H100.8626−0.27480.58320.069*
C110.27722 (11)0.59624 (14)0.26783 (7)0.0458 (3)
C120.32396 (13)0.71838 (15)0.29545 (8)0.0554 (4)
H120.38950.71670.32820.066*
C130.27396 (13)0.84376 (16)0.27477 (9)0.0597 (4)
H130.30610.92560.29350.072*
C140.17787 (14)0.84657 (15)0.22704 (9)0.0594 (4)
H140.14420.93050.21350.071*
C150.12991 (12)0.72505 (14)0.19859 (9)0.0561 (4)
H150.06440.72820.16590.067*
C160.17855 (11)0.59898 (13)0.21839 (8)0.0460 (3)
C170.04541 (11)0.47710 (14)0.13642 (8)0.0495 (3)
H17A0.06940.52760.08970.059*
H17B−0.02080.52390.15870.059*
C180.01249 (11)0.33352 (14)0.11347 (8)0.0479 (3)
C190.41863 (12)0.46231 (15)0.33609 (8)0.0542 (4)
H19A0.40010.50440.38670.065*
H19B0.48180.51350.31300.065*
C200.45447 (12)0.31491 (16)0.34906 (9)0.0548 (4)
N20.85154 (10)−0.58951 (13)0.52696 (7)0.0564 (3)
O10.13736 (8)0.47386 (9)0.19334 (6)0.0545 (3)
O20.05129 (9)0.23016 (10)0.14397 (6)0.0597 (3)
O3−0.06491 (9)0.33379 (10)0.05595 (6)0.0651 (3)
H23−0.08670.25120.04810.098*
O40.32100 (8)0.46709 (9)0.28462 (6)0.0531 (3)
O50.42135 (9)0.21927 (11)0.30849 (7)0.0710 (3)
O60.52702 (9)0.30628 (11)0.40864 (6)0.0709 (3)
H240.55060.22510.41850.106*
O70.17765 (9)0.17334 (11)0.28219 (6)0.0712 (3)
H210.24720.20120.28040.107*
H220.14660.20930.24100.107*
U11U22U33U12U13U23
N10.0485 (7)0.0614 (8)0.0619 (7)0.0020 (6)−0.0057 (6)0.0183 (6)
C10.0563 (9)0.0752 (11)0.0530 (9)0.0049 (8)−0.0126 (7)0.0131 (8)
C20.0600 (9)0.0681 (10)0.0477 (8)0.0021 (7)−0.0126 (7)0.0027 (7)
C30.0390 (7)0.0545 (8)0.0450 (7)−0.0045 (6)−0.0039 (6)0.0072 (6)
C40.0596 (9)0.0545 (9)0.0576 (9)−0.0024 (7)−0.0206 (7)0.0064 (7)
C50.0631 (9)0.0544 (9)0.0659 (10)−0.0012 (7)−0.0148 (8)0.0071 (7)
C60.0416 (7)0.0524 (8)0.0438 (7)−0.0029 (6)−0.0028 (6)0.0038 (6)
C70.0703 (10)0.0606 (10)0.0669 (10)0.0008 (8)−0.0296 (8)−0.0013 (7)
C80.0746 (11)0.0555 (9)0.0707 (10)−0.0005 (8)−0.0216 (9)−0.0062 (8)
C90.0601 (9)0.0614 (10)0.0605 (9)0.0063 (7)−0.0208 (7)−0.0002 (7)
C100.0591 (8)0.0562 (9)0.0578 (9)0.0015 (7)−0.0184 (7)−0.0038 (7)
C110.0460 (7)0.0424 (7)0.0491 (8)0.0020 (6)−0.0019 (6)0.0038 (6)
C120.0569 (8)0.0524 (8)0.0564 (9)−0.0040 (7)−0.0123 (7)−0.0008 (7)
C130.0711 (10)0.0460 (8)0.0619 (9)−0.0055 (7)−0.0024 (8)−0.0063 (7)
C140.0701 (9)0.0429 (8)0.0653 (9)0.0085 (7)−0.0010 (8)−0.0015 (7)
C150.0536 (8)0.0473 (8)0.0673 (9)0.0062 (6)−0.0098 (7)−0.0008 (7)
C160.0434 (7)0.0412 (7)0.0532 (8)0.0010 (6)−0.0036 (6)−0.0006 (6)
C170.0436 (7)0.0486 (8)0.0559 (8)0.0043 (6)−0.0107 (6)0.0010 (6)
C180.0419 (7)0.0512 (8)0.0504 (8)0.0016 (6)−0.0037 (6)0.0006 (6)
C190.0486 (8)0.0563 (9)0.0572 (8)−0.0028 (6)−0.0138 (7)0.0076 (7)
C200.0420 (7)0.0605 (9)0.0615 (9)−0.0020 (7)−0.0072 (7)0.0113 (7)
N20.0542 (7)0.0556 (7)0.0592 (7)0.0048 (6)−0.0051 (6)0.0036 (6)
O10.0508 (5)0.0404 (5)0.0718 (6)0.0025 (4)−0.0210 (5)−0.0003 (4)
O20.0639 (6)0.0475 (6)0.0672 (7)0.0036 (5)−0.0183 (5)0.0005 (5)
O30.0661 (6)0.0540 (6)0.0743 (7)−0.0046 (5)−0.0293 (6)0.0030 (5)
O40.0492 (5)0.0462 (6)0.0635 (6)0.0002 (4)−0.0167 (4)0.0052 (4)
O50.0635 (7)0.0599 (7)0.0888 (8)0.0060 (5)−0.0230 (6)−0.0003 (6)
O60.0665 (7)0.0639 (7)0.0812 (8)0.0023 (5)−0.0319 (6)0.0154 (6)
O70.0797 (7)0.0581 (7)0.0750 (7)−0.0155 (5)−0.0260 (6)0.0135 (5)
N1—C11.325 (2)C12—H120.9300
N1—C51.3342 (18)C13—C141.362 (2)
C1—C21.374 (2)C13—H130.9300
C1—H10.9300C14—C151.386 (2)
C2—C31.3885 (18)C14—H140.9300
C2—H20.9300C15—C161.3861 (19)
C3—C41.392 (2)C15—H150.9300
C3—C61.489 (2)C16—O11.3695 (16)
C4—C51.371 (2)C17—O11.4208 (15)
C4—H40.9300C17—C181.495 (2)
C5—H50.9300C17—H17A0.9700
C6—C101.3818 (18)C17—H17B0.9700
C6—C71.384 (2)C18—O21.2105 (16)
C7—C81.370 (2)C18—O31.3083 (16)
C7—H70.9300C19—O41.4136 (15)
C8—N21.3237 (18)C19—C201.505 (2)
C8—H80.9300C19—H19A0.9700
C9—N21.3320 (19)C19—H19B0.9700
C9—C101.376 (2)C20—O51.2113 (18)
C9—H90.9300C20—O61.3002 (16)
C10—H100.9300O3—H230.8499
C11—O41.3803 (17)O6—H240.8500
C11—C121.3812 (19)O7—H210.8499
C11—C161.4025 (18)O7—H220.8501
C12—C131.390 (2)
C1—N1—C5117.34 (13)C14—C13—C12119.87 (13)
N1—C1—C2123.17 (12)C14—C13—H13120.1
N1—C1—H1118.4C12—C13—H13120.1
C2—C1—H1118.4C13—C14—C15120.36 (13)
C1—C2—C3120.17 (14)C13—C14—H14119.8
C1—C2—H2119.9C15—C14—H14119.8
C3—C2—H2119.9C16—C15—C14120.67 (13)
C2—C3—C4116.16 (13)C16—C15—H15119.7
C2—C3—C6122.24 (13)C14—C15—H15119.7
C4—C3—C6121.60 (11)O1—C16—C15124.87 (11)
C5—C4—C3119.96 (12)O1—C16—C11116.23 (11)
C5—C4—H4120.0C15—C16—C11118.90 (12)
C3—C4—H4120.0O1—C17—C18109.80 (10)
N1—C5—C4123.18 (14)O1—C17—H17A109.7
N1—C5—H5118.4C18—C17—H17A109.7
C4—C5—H5118.4O1—C17—H17B109.7
C10—C6—C7115.98 (13)C18—C17—H17B109.7
C10—C6—C3122.33 (12)H17A—C17—H17B108.2
C7—C6—C3121.68 (12)O2—C18—O3124.09 (13)
C8—C7—C6120.14 (13)O2—C18—C17124.94 (12)
C8—C7—H7119.9O3—C18—C17110.98 (11)
C6—C7—H7119.9O4—C19—C20109.62 (11)
N2—C8—C7123.49 (14)O4—C19—H19A109.7
N2—C8—H8118.3C20—C19—H19A109.7
C7—C8—H8118.3O4—C19—H19B109.7
N2—C9—C10122.64 (12)C20—C19—H19B109.7
N2—C9—H9118.7H19A—C19—H19B108.2
C10—C9—H9118.7O5—C20—O6125.43 (14)
C9—C10—C6120.57 (13)O5—C20—C19124.30 (12)
C9—C10—H10119.7O6—C20—C19110.26 (13)
C6—C10—H10119.7C8—N2—C9117.18 (13)
O4—C11—C12124.82 (11)C16—O1—C17116.18 (10)
O4—C11—C16115.56 (11)C18—O3—H23108.1
C12—C11—C16119.61 (11)C11—O4—C19116.26 (10)
C11—C12—C13120.59 (12)C20—O6—H24114.3
C11—C12—H12119.7H21—O7—H22103.2
C13—C12—H12119.7
D—H···AD—HH···AD···AD—H···A
O3—H23···N2i0.851.762.6051 (19)173
O6—H24···N10.851.742.5871 (19)176
O7—H21···O50.852.072.8817 (19)160
O7—H22···O20.851.972.7826 (17)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H23⋯N2i0.851.762.6051 (19)173
O6—H24⋯N10.851.742.5871 (19)176
O7—H21⋯O50.852.072.8817 (19)160
O7—H22⋯O20.851.972.7826 (17)161

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  4,4'-Bipyridine-2-hydroxy-propane-1,2,3-tricarboxylic acid (3/2).

Authors:  Janet Soleimannejad; Hossein Aghabozorg; Shokoh Najafi; Mina Nasibipour; Jafar Attar Gharamaleki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-18
  3 in total

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