Literature DB >> 21582120

2-(1H-indol-3-ylcarbon-yl)acetonitrile.

P Ramesh, A Subbiahpandi, P Thirumurugan, Paramasivan T Perumal, M N Ponnuswamy.   

Abstract

The title compound, C(11)H(8)N(2)O, crystallizes with two crystallographically independent mol-ecules in the asymmetric unit which are approximately perpendicular to each other [79.97 (6)°]. The indole ring system is planar [r.m.s. deviation = 0.010 (1) Å]. The crystal structure is stabilized by inter-molecular C-H⋯N and N-H⋯O inter-actions.

Entities:  

Year:  2009        PMID: 21582120      PMCID: PMC2968615          DOI: 10.1107/S1600536809001342

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of indole derivatives as bioactive drugs, see: Stevenson et al. (2000 ▶). For their biological properties, see: Harris & Uhle (1960 ▶); Ho et al. (1986 ▶). For their high aldose reductase inhibitory activity, see: Rajeswaran et al. (1999 ▶). For a related structure, see: Ramesh et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H8N2O M = 184.19 Triclinic, a = 7.3439 (2) Å b = 7.3534 (2) Å c = 18.2475 (5) Å α = 83.402 (2)° β = 78.890 (2)° γ = 73.501 (1)° V = 925.23 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 (2) K 0.30 × 0.30 × 0.20 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.974, T max = 0.983 18838 measured reflections 3253 independent reflections 2717 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.100 S = 1.06 3253 reflections 253 parameters H-atom parameters constrained Δρmax = 0.12 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001342/bt2839sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001342/bt2839Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8N2OZ = 4
Mr = 184.19F(000) = 384
Triclinic, P1Dx = 1.322 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3439 (2) ÅCell parameters from 3554 reflections
b = 7.3534 (2) Åθ = 1.1–25.0°
c = 18.2475 (5) ŵ = 0.09 mm1
α = 83.402 (2)°T = 293 K
β = 78.890 (2)°Block, colourless
γ = 73.501 (1)°0.30 × 0.30 × 0.20 mm
V = 925.23 (4) Å3
Bruker Kappa APEXII area-detector diffractometer3253 independent reflections
Radiation source: fine-focus sealed tube2717 reflections with I > 2σ(I)
graphiteRint = 0.025
ω and φ scansθmax = 25.0°, θmin = 1.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −7→8
Tmin = 0.974, Tmax = 0.983k = −8→8
18838 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0404P)2 + 0.2437P] where P = (Fo2 + 2Fc2)/3
3253 reflections(Δ/σ)max = 0.008
253 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.13478 (16)0.2464 (2)1.01403 (7)0.0659 (4)
O1'0.76317 (17)0.33368 (14)0.47980 (6)0.0543 (3)
N10.7573 (2)0.2397 (2)1.00692 (9)0.0619 (4)
H10.86780.23141.01830.074*
N1'0.77718 (19)−0.28849 (17)0.48288 (7)0.0479 (3)
H1'0.7932−0.40240.47090.057*
C20.6023 (2)0.2202 (2)1.05570 (11)0.0567 (4)
H20.59770.19561.10710.068*
C2'0.8188 (2)−0.1468 (2)0.43593 (9)0.0441 (4)
H2'0.8689−0.15670.38530.053*
C30.4501 (2)0.2418 (2)1.01850 (9)0.0475 (4)
C3'0.7768 (2)0.01550 (19)0.47349 (8)0.0385 (3)
C40.5195 (2)0.2786 (2)0.94094 (9)0.0478 (4)
C4'0.7012 (2)−0.03211 (19)0.54959 (8)0.0389 (3)
C5'0.6267 (2)0.0675 (2)0.61400 (9)0.0479 (4)
H5'0.62140.19560.61330.058*
C50.4391 (2)0.3141 (2)0.87583 (10)0.0565 (4)
H50.31070.31750.87770.068*
C6'0.5613 (3)−0.0269 (2)0.67853 (9)0.0569 (4)
H6'0.50980.03890.72160.068*
C60.5521 (3)0.3437 (3)0.80899 (11)0.0678 (5)
H60.49910.36870.76530.081*
C7'0.5702 (3)−0.2187 (2)0.68090 (10)0.0583 (4)
H7'0.5269−0.27920.72570.070*
C70.7456 (3)0.3370 (3)0.80531 (13)0.0742 (6)
H70.81950.35590.75910.089*
C8'0.6417 (2)−0.3200 (2)0.61849 (10)0.0527 (4)
H8'0.6475−0.44830.61990.063*
C80.8287 (3)0.3032 (3)0.86844 (13)0.0684 (5)
H80.95740.29930.86600.082*
C90.7140 (2)0.2751 (2)0.93550 (11)0.0540 (4)
C9'0.7049 (2)−0.2241 (2)0.55332 (8)0.0419 (3)
C100.2612 (2)0.2273 (2)1.05110 (9)0.0482 (4)
C10'0.8024 (2)0.19645 (19)0.44251 (8)0.0396 (3)
C11'0.8851 (2)0.2118 (2)0.35992 (8)0.0455 (4)
H11A1.02100.14510.35240.055*
H11B0.82140.15050.33220.055*
C110.2210 (2)0.1842 (3)1.13506 (9)0.0562 (4)
H11C0.30720.06281.14800.067*
H11D0.24740.28091.16020.067*
C120.0245 (3)0.1779 (3)1.16141 (9)0.0605 (5)
C12'0.8620 (2)0.4067 (2)0.33086 (9)0.0513 (4)
N13−0.1297 (3)0.1725 (3)1.18193 (9)0.0878 (6)
N13'0.8429 (3)0.5597 (2)0.30820 (9)0.0806 (5)
U11U22U33U12U13U23
O10.0436 (6)0.1027 (10)0.0585 (7)−0.0291 (6)−0.0166 (6)0.0039 (7)
O1'0.0829 (8)0.0340 (6)0.0491 (6)−0.0248 (5)−0.0035 (6)−0.0054 (5)
N10.0409 (8)0.0647 (9)0.0868 (11)−0.0155 (7)−0.0217 (8)−0.0100 (8)
N1'0.0611 (8)0.0298 (6)0.0566 (8)−0.0163 (6)−0.0112 (6)−0.0059 (6)
C20.0469 (9)0.0597 (10)0.0689 (11)−0.0150 (8)−0.0187 (8)−0.0087 (8)
C2'0.0521 (9)0.0379 (8)0.0453 (8)−0.0158 (6)−0.0082 (7)−0.0056 (6)
C30.0412 (8)0.0451 (9)0.0602 (10)−0.0126 (7)−0.0144 (7)−0.0072 (7)
C3'0.0432 (8)0.0323 (7)0.0435 (8)−0.0136 (6)−0.0109 (6)−0.0027 (6)
C40.0420 (8)0.0367 (8)0.0674 (11)−0.0124 (6)−0.0128 (7)−0.0038 (7)
C4'0.0409 (8)0.0333 (7)0.0461 (8)−0.0130 (6)−0.0123 (6)−0.0011 (6)
C5'0.0566 (9)0.0388 (8)0.0501 (9)−0.0144 (7)−0.0095 (7)−0.0043 (7)
C50.0509 (9)0.0527 (10)0.0689 (11)−0.0184 (8)−0.0160 (8)0.0048 (8)
C6'0.0671 (11)0.0573 (10)0.0458 (9)−0.0172 (8)−0.0067 (8)−0.0043 (8)
C60.0761 (13)0.0590 (11)0.0706 (13)−0.0260 (9)−0.0147 (10)0.0103 (9)
C7'0.0656 (11)0.0587 (11)0.0514 (10)−0.0237 (8)−0.0092 (8)0.0103 (8)
C70.0741 (13)0.0641 (12)0.0810 (14)−0.0287 (10)0.0052 (11)0.0041 (10)
C8'0.0611 (10)0.0385 (8)0.0623 (11)−0.0213 (7)−0.0151 (8)0.0093 (7)
C80.0486 (10)0.0584 (11)0.0983 (16)−0.0215 (8)−0.0032 (10)−0.0021 (10)
C90.0424 (9)0.0429 (9)0.0794 (12)−0.0144 (7)−0.0114 (8)−0.0055 (8)
C9'0.0443 (8)0.0348 (7)0.0498 (9)−0.0136 (6)−0.0119 (7)−0.0016 (6)
C100.0438 (8)0.0472 (9)0.0576 (10)−0.0131 (7)−0.0148 (7)−0.0065 (7)
C10'0.0432 (8)0.0347 (7)0.0446 (8)−0.0140 (6)−0.0106 (6)−0.0026 (6)
C11'0.0512 (9)0.0421 (8)0.0451 (9)−0.0155 (7)−0.0081 (7)−0.0026 (7)
C110.0554 (10)0.0621 (10)0.0551 (10)−0.0163 (8)−0.0154 (8)−0.0085 (8)
C120.0591 (12)0.0765 (12)0.0430 (9)−0.0117 (9)−0.0078 (8)−0.0100 (8)
C12'0.0641 (10)0.0487 (10)0.0432 (9)−0.0227 (8)−0.0044 (8)0.0001 (7)
N130.0640 (11)0.1429 (18)0.0513 (10)−0.0231 (11)−0.0009 (8)−0.0111 (10)
N13'0.1215 (15)0.0564 (10)0.0620 (10)−0.0331 (10)−0.0029 (10)0.0065 (8)
O1—C101.2190 (18)C5—H50.9300
O1'—C10'1.2173 (17)C6'—C7'1.389 (2)
N1—C21.335 (2)C6'—H6'0.9300
N1—C91.379 (2)C6—C71.396 (3)
N1—H10.8600C6—H60.9300
N1'—C2'1.3372 (19)C7'—C8'1.367 (2)
N1'—C9'1.3755 (19)C7'—H7'0.9300
N1'—H1'0.8600C7—C81.371 (3)
C2—C31.379 (2)C7—H70.9300
C2—H20.9300C8'—C9'1.381 (2)
C2'—C3'1.373 (2)C8'—H8'0.9300
C2'—H2'0.9300C8—C91.376 (3)
C3—C101.429 (2)C8—H80.9300
C3—C41.431 (2)C10—C111.517 (2)
C3'—C10'1.4331 (19)C10'—C11'1.516 (2)
C3'—C4'1.436 (2)C11'—C12'1.445 (2)
C4—C51.393 (2)C11'—H11A0.9700
C4—C91.406 (2)C11'—H11B0.9700
C4'—C5'1.393 (2)C11—C121.443 (3)
C4'—C9'1.3987 (19)C11—H11C0.9700
C5'—C6'1.372 (2)C11—H11D0.9700
C5'—H5'0.9300C12—N131.133 (2)
C5—C61.369 (3)C12'—N13'1.132 (2)
C2—N1—C9109.94 (14)C8'—C7'—H7'119.4
C2—N1—H1125.0C6'—C7'—H7'119.4
C9—N1—H1125.0C8—C7—C6121.35 (19)
C2'—N1'—C9'109.56 (12)C8—C7—H7119.3
C2'—N1'—H1'125.2C6—C7—H7119.3
C9'—N1'—H1'125.2C7'—C8'—C9'117.34 (15)
N1—C2—C3109.81 (16)C7'—C8'—H8'121.3
N1—C2—H2125.1C9'—C8'—H8'121.3
C3—C2—H2125.1C7—C8—C9117.29 (18)
N1'—C2'—C3'110.07 (14)C7—C8—H8121.4
N1'—C2'—H2'125.0C9—C8—H8121.4
C3'—C2'—H2'125.0C8—C9—N1130.03 (16)
C2—C3—C10126.55 (16)C8—C9—C4122.72 (17)
C2—C3—C4106.56 (14)N1—C9—C4107.25 (15)
C10—C3—C4126.89 (14)N1'—C9'—C8'129.55 (14)
C2'—C3'—C10'126.66 (14)N1'—C9'—C4'107.66 (13)
C2'—C3'—C4'106.34 (12)C8'—C9'—C4'122.78 (14)
C10'—C3'—C4'126.99 (13)O1—C10—C3122.51 (15)
C5—C4—C9118.60 (16)O1—C10—C11119.87 (15)
C5—C4—C3134.95 (15)C3—C10—C11117.61 (13)
C9—C4—C3106.45 (14)O1'—C10'—C3'122.74 (13)
C5'—C4'—C9'118.54 (13)O1'—C10'—C11'120.06 (13)
C5'—C4'—C3'135.07 (13)C3'—C10'—C11'117.20 (12)
C9'—C4'—C3'106.36 (12)C12'—C11'—C10'112.33 (13)
C6'—C5'—C4'118.70 (14)C12'—C11'—H11A109.1
C6'—C5'—H5'120.6C10'—C11'—H11A109.1
C4'—C5'—H5'120.6C12'—C11'—H11B109.1
C6—C5—C4118.94 (17)C10'—C11'—H11B109.1
C6—C5—H5120.5H11A—C11'—H11B107.9
C4—C5—H5120.5C12—C11—C10112.34 (14)
C5'—C6'—C7'121.46 (16)C12—C11—H11C109.1
C5'—C6'—H6'119.3C10—C11—H11C109.1
C7'—C6'—H6'119.3C12—C11—H11D109.1
C5—C6—C7121.09 (19)C10—C11—H11D109.1
C5—C6—H6119.5H11C—C11—H11D107.9
C7—C6—H6119.5N13—C12—C11179.8 (2)
C8'—C7'—C6'121.15 (16)N13'—C12'—C11'179.6 (2)
C9—N1—C2—C30.0 (2)C2—N1—C9—C40.35 (18)
C9'—N1'—C2'—C3'0.34 (17)C5—C4—C9—C8−0.7 (2)
N1—C2—C3—C10178.76 (15)C3—C4—C9—C8179.28 (15)
N1—C2—C3—C4−0.41 (19)C5—C4—C9—N1179.39 (14)
N1'—C2'—C3'—C10'179.69 (14)C3—C4—C9—N1−0.59 (17)
N1'—C2'—C3'—C4'−0.69 (17)C2'—N1'—C9'—C8'179.31 (16)
C2—C3—C4—C5−179.36 (17)C2'—N1'—C9'—C4'0.18 (17)
C10—C3—C4—C51.5 (3)C7'—C8'—C9'—N1'−177.93 (15)
C2—C3—C4—C90.61 (17)C7'—C8'—C9'—C4'1.1 (2)
C10—C3—C4—C9−178.56 (15)C5'—C4'—C9'—N1'177.78 (13)
C2'—C3'—C4'—C5'−177.20 (16)C3'—C4'—C9'—N1'−0.59 (16)
C10'—C3'—C4'—C5'2.4 (3)C5'—C4'—C9'—C8'−1.4 (2)
C2'—C3'—C4'—C9'0.78 (16)C3'—C4'—C9'—C8'−179.80 (14)
C10'—C3'—C4'—C9'−179.60 (14)C2—C3—C10—O1−179.17 (16)
C9'—C4'—C5'—C6'0.4 (2)C4—C3—C10—O1−0.2 (3)
C3'—C4'—C5'—C6'178.23 (16)C2—C3—C10—C110.1 (2)
C9—C4—C5—C60.2 (2)C4—C3—C10—C11179.09 (15)
C3—C4—C5—C6−179.88 (17)C2'—C3'—C10'—O1'−179.31 (15)
C4'—C5'—C6'—C7'0.8 (3)C4'—C3'—C10'—O1'1.1 (2)
C4—C5—C6—C70.6 (3)C2'—C3'—C10'—C11'−0.3 (2)
C5'—C6'—C7'—C8'−1.2 (3)C4'—C3'—C10'—C11'−179.83 (13)
C5—C6—C7—C8−0.9 (3)O1'—C10'—C11'—C12'−14.8 (2)
C6'—C7'—C8'—C9'0.2 (3)C3'—C10'—C11'—C12'166.12 (13)
C6—C7—C8—C90.3 (3)O1—C10—C11—C12−2.2 (2)
C7—C8—C9—N1−179.67 (17)C3—C10—C11—C12178.56 (15)
C7—C8—C9—C40.5 (3)C10—C11—C12—N1351 (88)
C2—N1—C9—C8−179.50 (18)C10'—C11'—C12'—N13'−58 (25)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.861.982.8146 (18)163
C2—H2···N13i0.932.593.236 (2)127
N1'—H1'···O1'ii0.862.002.8166 (15)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.861.982.8146 (18)163
C2—H2⋯N13i0.932.593.236 (2)127
N1′—H1′⋯O1′ii0.862.002.8166 (15)158

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-Aryl tryptamines: selective high-affinity antagonists for the h5-HT2A receptor.

Authors:  G I Stevenson; A L Smith; S Lewis; S G Michie; J G Neduvelil; S Patel; R Marwood; S Patel; J L Castro
Journal:  Bioorg Med Chem Lett       Date:  2000-12-18       Impact factor: 2.823

3.  4-(2,4-Dichlorophenyl)-2-(1H-indol-3-yl)-6-methoxypyridine-3,5-dicarbonitrile.

Authors:  P Ramesh; A Subbiahpandi; P Thirumurugan; P T Perumal; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.