Literature DB >> 21201104

4-(2,4-Dichlorophenyl)-2-(1H-indol-3-yl)-6-methoxypyridine-3,5-dicarbonitrile.

P Ramesh, A Subbiahpandi, P Thirumurugan, P T Perumal, M N Ponnuswamy.   

Abstract

In the title compound, C(22)H(12)Cl(2)N(4)O, the indole ring system and the benzene ring form dihedral angles of 21.18 (7)° and 68.43 (8)°, respectively, with the pyridine ring. The meth-oxy group is coplanar with the pyridine ring. In the crystal structure N-H⋯N inter-molecular hydrogen bonds link the mol-ecules into C(10) chains running along [011]. Intramolec-ular C-H⋯N hydrogen bonds are also observed.

Entities:  

Year:  2008        PMID: 21201104      PMCID: PMC2959379          DOI: 10.1107/S1600536808027670

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: James et al. (1991 ▶); Kobayashi et al. (1991 ▶); Rajeswaran et al. (1999 ▶). For graph-set analysis of hydrogen-bonding patterns, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C22H12Cl2N4O M = 419.26 Triclinic, a = 9.5394 (2) Å b = 10.0358 (2) Å c = 11.1739 (3) Å α = 111.994 (1)° β = 97.303 (1)° γ = 93.715 (1)° V = 976.46 (4) Å3 Z = 2 Mo Kα radiation μ = 0.35 mm−1 T = 298 (2) K 0.58 × 0.40 × 0.28 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.821, T max = 0.907 10781 measured reflections 3401 independent reflections 3019 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.096 S = 1.05 3401 reflections 267 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, (1997 ▶)); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808027670/ci2655sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808027670/ci2655Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H12Cl2N4OZ = 2
Mr = 419.26F(000) = 428
Triclinic, P1Dx = 1.426 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.5394 (2) ÅCell parameters from 2563 reflections
b = 10.0358 (2) Åθ = 2.2–25.0°
c = 11.1739 (3) ŵ = 0.35 mm1
α = 111.994 (1)°T = 298 K
β = 97.303 (1)°Block, yellow
γ = 93.715 (1)°0.58 × 0.40 × 0.28 mm
V = 976.46 (4) Å3
Bruker APEXII CCD area-detector diffractometer3401 independent reflections
Radiation source: fine-focus sealed tube3019 reflections with I > 2σ(I)
graphiteRint = 0.019
ω and φ scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −11→11
Tmin = 0.821, Tmax = 0.907k = −11→10
10781 measured reflectionsl = −11→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.096H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0487P)2 + 0.3783P] where P = (Fo2 + 2Fc2)/3
3401 reflections(Δ/σ)max = 0.005
267 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.20213 (5)0.05813 (6)0.06721 (6)0.06710 (19)
Cl20.18710 (5)0.43669 (6)0.01921 (5)0.05569 (16)
O10.71041 (12)0.47517 (13)0.22771 (11)0.0440 (3)
N10.60609 (13)0.63393 (14)0.38834 (12)0.0322 (3)
C20.49048 (16)0.66990 (16)0.44682 (14)0.0294 (3)
C30.36036 (15)0.57682 (16)0.39683 (14)0.0293 (3)
C40.34811 (16)0.45252 (16)0.28224 (14)0.0294 (3)
C50.46814 (16)0.42069 (17)0.22319 (15)0.0332 (4)
C60.59570 (16)0.51473 (17)0.28335 (15)0.0327 (3)
C70.51214 (16)0.80627 (17)0.55884 (15)0.0322 (3)
C80.62593 (17)0.92294 (16)0.58897 (15)0.0332 (3)
C90.73824 (19)0.94826 (18)0.52844 (17)0.0417 (4)
H90.75190.88010.44860.050*
C100.8286 (2)1.0759 (2)0.5888 (2)0.0505 (5)
H100.90421.09270.54930.061*
C110.8089 (2)1.18028 (19)0.7078 (2)0.0516 (5)
H110.87191.26510.74640.062*
C120.6985 (2)1.16004 (19)0.76875 (18)0.0474 (4)
H120.68431.23000.84740.057*
C130.60840 (18)1.03058 (18)0.70822 (16)0.0380 (4)
N140.49146 (17)0.98300 (16)0.74801 (15)0.0456 (4)
H140.462 (2)1.023 (2)0.818 (2)0.057 (6)*
C150.43425 (18)0.85081 (18)0.66041 (16)0.0399 (4)
H150.35440.79740.66710.048*
C160.23671 (17)0.61040 (17)0.45772 (15)0.0349 (4)
N170.13813 (16)0.63647 (17)0.50645 (16)0.0519 (4)
C180.21094 (15)0.35534 (16)0.22670 (14)0.0302 (3)
C190.15904 (18)0.27834 (18)0.29551 (16)0.0380 (4)
H190.21000.28920.37590.046*
C200.03299 (19)0.18576 (19)0.24684 (18)0.0441 (4)
H200.00020.13350.29320.053*
C21−0.04298 (17)0.17221 (18)0.12898 (18)0.0427 (4)
C220.00404 (17)0.24803 (19)0.05835 (17)0.0425 (4)
H22−0.04850.2383−0.02110.051*
C230.13088 (17)0.33881 (17)0.10799 (15)0.0353 (4)
C240.46601 (17)0.29503 (19)0.10682 (16)0.0404 (4)
N250.46376 (18)0.19450 (19)0.01436 (16)0.0597 (5)
C260.84527 (18)0.5613 (2)0.29323 (18)0.0490 (5)
H26A0.84350.65640.29200.073*
H26B0.92010.51620.24910.073*
H26C0.86190.56870.38220.073*
U11U22U33U12U13U23
Cl10.0368 (3)0.0635 (3)0.0759 (4)−0.0164 (2)0.0051 (2)0.0037 (3)
Cl20.0581 (3)0.0665 (3)0.0449 (3)−0.0046 (2)−0.0027 (2)0.0297 (2)
O10.0292 (6)0.0475 (7)0.0372 (6)0.0012 (5)0.0101 (5)−0.0049 (5)
N10.0281 (7)0.0327 (7)0.0266 (7)0.0013 (5)0.0038 (5)0.0017 (5)
C20.0310 (8)0.0295 (7)0.0237 (7)0.0045 (6)0.0040 (6)0.0058 (6)
C30.0292 (8)0.0296 (8)0.0248 (7)0.0043 (6)0.0047 (6)0.0053 (6)
C40.0286 (8)0.0301 (8)0.0251 (7)0.0030 (6)0.0010 (6)0.0069 (6)
C50.0318 (8)0.0322 (8)0.0261 (8)0.0027 (6)0.0044 (6)0.0008 (6)
C60.0292 (8)0.0354 (8)0.0272 (8)0.0033 (6)0.0059 (6)0.0049 (6)
C70.0315 (8)0.0308 (8)0.0264 (8)0.0031 (6)0.0025 (6)0.0031 (6)
C80.0358 (8)0.0287 (8)0.0286 (8)0.0041 (6)0.0000 (6)0.0056 (6)
C90.0469 (10)0.0356 (9)0.0391 (9)0.0028 (7)0.0097 (8)0.0099 (7)
C100.0497 (11)0.0440 (10)0.0567 (12)−0.0032 (8)0.0108 (9)0.0190 (9)
C110.0547 (11)0.0342 (9)0.0547 (12)−0.0084 (8)−0.0026 (9)0.0104 (8)
C120.0556 (11)0.0327 (9)0.0384 (10)−0.0009 (8)−0.0011 (8)0.0002 (7)
C130.0412 (9)0.0329 (8)0.0309 (8)0.0031 (7)0.0012 (7)0.0040 (7)
N140.0491 (9)0.0395 (8)0.0308 (8)0.0010 (7)0.0124 (7)−0.0071 (6)
C150.0384 (9)0.0378 (9)0.0308 (8)−0.0009 (7)0.0071 (7)−0.0006 (7)
C160.0324 (8)0.0324 (8)0.0305 (8)−0.0003 (6)0.0045 (7)0.0027 (6)
N170.0397 (8)0.0519 (9)0.0508 (9)0.0006 (7)0.0172 (7)0.0026 (7)
C180.0278 (8)0.0282 (7)0.0275 (8)0.0042 (6)0.0051 (6)0.0026 (6)
C190.0364 (9)0.0393 (9)0.0333 (9)0.0022 (7)0.0036 (7)0.0097 (7)
C200.0415 (9)0.0404 (9)0.0474 (10)−0.0012 (7)0.0133 (8)0.0126 (8)
C210.0287 (8)0.0380 (9)0.0464 (10)−0.0009 (7)0.0060 (7)0.0001 (7)
C220.0326 (9)0.0467 (10)0.0352 (9)0.0020 (7)−0.0033 (7)0.0045 (8)
C230.0339 (8)0.0361 (8)0.0297 (8)0.0039 (6)0.0029 (6)0.0067 (7)
C240.0306 (8)0.0408 (9)0.0350 (9)−0.0004 (7)0.0067 (7)−0.0017 (8)
N250.0475 (9)0.0546 (10)0.0464 (10)−0.0016 (7)0.0124 (7)−0.0152 (8)
C260.0291 (9)0.0586 (11)0.0441 (10)−0.0027 (8)0.0088 (7)0.0032 (8)
Cl1—C211.7345 (16)C11—C121.369 (3)
Cl2—C231.7418 (17)C11—H110.93
O1—C61.3363 (19)C12—C131.390 (2)
O1—C261.443 (2)C12—H120.93
N1—C61.3119 (19)C13—N141.373 (2)
N1—C21.3533 (19)N14—C151.347 (2)
C2—C31.417 (2)N14—H140.83 (2)
C2—C71.448 (2)C15—H150.93
C3—C41.399 (2)C16—N171.142 (2)
C3—C161.432 (2)C18—C191.388 (2)
C4—C51.389 (2)C18—C231.390 (2)
C4—C181.491 (2)C19—C201.384 (2)
C5—C61.411 (2)C19—H190.93
C5—C241.429 (2)C20—C211.374 (3)
C7—C151.385 (2)C20—H200.93
C7—C81.452 (2)C21—C221.378 (3)
C8—C91.396 (2)C22—C231.382 (2)
C8—C131.404 (2)C22—H220.93
C9—C101.378 (2)C24—N251.139 (2)
C9—H90.93C26—H26A0.96
C10—C111.395 (3)C26—H26B0.96
C10—H100.93C26—H26C0.96
C6—O1—C26117.54 (12)N14—C13—C12129.16 (16)
C6—N1—C2119.61 (13)N14—C13—C8107.90 (14)
N1—C2—C3119.97 (13)C12—C13—C8122.94 (16)
N1—C2—C7115.10 (13)C15—N14—C13109.99 (14)
C3—C2—C7124.94 (13)C15—N14—H14122.7 (15)
C4—C3—C2120.27 (13)C13—N14—H14127.0 (15)
C4—C3—C16118.28 (13)N14—C15—C7109.82 (15)
C2—C3—C16121.39 (13)N14—C15—H15125.1
C5—C4—C3118.09 (14)C7—C15—H15125.1
C5—C4—C18120.99 (13)N17—C16—C3179.60 (19)
C3—C4—C18120.91 (13)C19—C18—C23117.88 (14)
C4—C5—C6118.03 (13)C19—C18—C4119.46 (14)
C4—C5—C24121.96 (14)C23—C18—C4122.65 (14)
C6—C5—C24119.99 (14)C20—C19—C18121.33 (16)
N1—C6—O1120.15 (13)C20—C19—H19119.3
N1—C6—C5123.88 (14)C18—C19—H19119.3
O1—C6—C5115.97 (13)C21—C20—C19119.01 (17)
C15—C7—C2128.05 (15)C21—C20—H20120.5
C15—C7—C8106.02 (13)C19—C20—H20120.5
C2—C7—C8125.90 (14)C20—C21—C22121.45 (15)
C9—C8—C13118.23 (15)C20—C21—Cl1119.68 (15)
C9—C8—C7135.50 (14)C22—C21—Cl1118.87 (14)
C13—C8—C7106.27 (14)C21—C22—C23118.65 (16)
C10—C9—C8118.98 (16)C21—C22—H22120.7
C10—C9—H9120.5C23—C22—H22120.7
C8—C9—H9120.5C22—C23—C18121.66 (16)
C9—C10—C11121.41 (18)C22—C23—Cl2118.11 (13)
C9—C10—H10119.3C18—C23—Cl2120.21 (12)
C11—C10—H10119.3N25—C24—C5179.6 (2)
C12—C11—C10121.15 (17)O1—C26—H26A109.5
C12—C11—H11119.4O1—C26—H26B109.5
C10—C11—H11119.4H26A—C26—H26B109.5
C11—C12—C13117.28 (16)O1—C26—H26C109.5
C11—C12—H12121.4H26A—C26—H26C109.5
C13—C12—H12121.4H26B—C26—H26C109.5
C6—N1—C2—C31.9 (2)C8—C9—C10—C11−0.8 (3)
C6—N1—C2—C7−177.70 (14)C9—C10—C11—C12−0.3 (3)
N1—C2—C3—C4−4.2 (2)C10—C11—C12—C130.9 (3)
C7—C2—C3—C4175.33 (14)C11—C12—C13—N14179.70 (19)
N1—C2—C3—C16178.90 (14)C11—C12—C13—C8−0.5 (3)
C7—C2—C3—C16−1.6 (2)C9—C8—C13—N14179.26 (15)
C2—C3—C4—C52.7 (2)C7—C8—C13—N14−0.18 (19)
C16—C3—C4—C5179.73 (15)C9—C8—C13—C12−0.6 (3)
C2—C3—C4—C18−178.57 (14)C7—C8—C13—C12179.97 (16)
C16—C3—C4—C18−1.6 (2)C12—C13—N14—C15179.98 (19)
C3—C4—C5—C60.8 (2)C8—C13—N14—C150.1 (2)
C18—C4—C5—C6−177.91 (14)C13—N14—C15—C70.0 (2)
C3—C4—C5—C24179.19 (15)C2—C7—C15—N14177.82 (16)
C18—C4—C5—C240.5 (2)C8—C7—C15—N14−0.1 (2)
C2—N1—C6—O1−177.39 (14)C5—C4—C18—C19112.23 (18)
C2—N1—C6—C51.9 (2)C3—C4—C18—C19−66.4 (2)
C26—O1—C6—N14.9 (2)C5—C4—C18—C23−68.3 (2)
C26—O1—C6—C5−174.42 (16)C3—C4—C18—C23113.05 (17)
C4—C5—C6—N1−3.3 (3)C23—C18—C19—C201.2 (2)
C24—C5—C6—N1178.32 (16)C4—C18—C19—C20−179.29 (15)
C4—C5—C6—O1176.04 (15)C18—C19—C20—C21−1.1 (3)
C24—C5—C6—O1−2.4 (2)C19—C20—C21—C220.3 (3)
N1—C2—C7—C15−158.09 (17)C19—C20—C21—Cl1−179.34 (13)
C3—C2—C7—C1522.4 (3)C20—C21—C22—C230.3 (3)
N1—C2—C7—C819.4 (2)Cl1—C21—C22—C23179.99 (12)
C3—C2—C7—C8−160.10 (15)C21—C22—C23—C18−0.2 (2)
C15—C7—C8—C9−179.15 (19)C21—C22—C23—Cl2−178.73 (13)
C2—C7—C8—C92.9 (3)C19—C18—C23—C22−0.5 (2)
C15—C7—C8—C130.16 (18)C4—C18—C23—C22179.96 (14)
C2—C7—C8—C13−177.80 (15)C19—C18—C23—Cl2177.97 (12)
C13—C8—C9—C101.2 (3)C4—C18—C23—Cl2−1.5 (2)
C7—C8—C9—C10−179.58 (18)
D—H···AD—HH···AD···AD—H···A
C9—H9···N10.932.563.045 (2)113
C15—H15···N170.932.563.282 (2)135
N14—H14···N25i0.83 (2)2.22 (2)2.996 (2)156 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9⋯N10.932.563.045 (2)113
C15—H15⋯N170.932.563.282 (2)135
N14—H14⋯N25i0.83 (2)2.22 (2)2.996 (2)156 (2)

Symmetry code: (i) .

  2 in total

1.  Two new brominated tyrosine derivatives from the sponge Druinella (= Psammaplysilla) purpurea.

Authors:  D M James; H B Kunze; D J Faulkner
Journal:  J Nat Prod       Date:  1991 Jul-Aug       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total
  1 in total

1.  2-(1H-indol-3-ylcarbon-yl)acetonitrile.

Authors:  P Ramesh; A Subbiahpandi; P Thirumurugan; Paramasivan T Perumal; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-04
  1 in total

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