Literature DB >> 21582020

N,N'-Bis[(E)-quinoxalin-2-ylmethyl-idene]-ethane-1,2-diamine.

Digna Varghese1, V Arun, Manju Sebastian, P Leeju, G Varsha, K K M Yusuff.   

Abstract

In the mol-ecule of the title compound, C(20)H(16)N(6), the central C-C bond lies on a crystallographic inversion centre. The quinoxalidine ring is nearly planar, with a maximum deviation of 0.021 (2) Å from the mean plane. The crystal structure is stabilized by inter-molecular C-H⋯N inter-actions, leading to the formation of a layer-like structure, which extends along the a axis.

Entities:  

Year:  2009        PMID: 21582020      PMCID: PMC2968406          DOI: 10.1107/S1600536809003006

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the Schiff base, see: Zolezzi et al. (1999 ▶). For the properties of Schiff base ligands, see: Gupta & Sutar (2008 ▶); Harmenberg et al. (1991 ▶); Mayadevi et al. (2003 ▶); Miller et al. (1999 ▶); Naylor et al. (1993 ▶); Sreekala & Yusuff (1994 ▶); Xavier et al. (2004 ▶); Yusuff & Sreekala (1991 ▶). For related structures, see: Habibi et al. (2006 ▶); Taylor & Kennard (1982 ▶).

Experimental

Crystal data

C20H16N6 M = 340.39 Triclinic, a = 6.888 (2) Å b = 7.381 (3) Å c = 9.638 (4) Å α = 101.674 (6)° β = 96.233 (6)° γ = 116.046 (5)° V = 420.1 (3) Å3 Z = 1 Mo Kα radiation μ = 0.09 mm−1 T = 298 (2) K 0.40 × 0.24 × 0.18 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.967, T max = 0.995 3956 measured reflections 1465 independent reflections 1239 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.164 S = 1.27 1465 reflections 118 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and/or ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809003006/fj2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809003006/fj2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H16N6Z = 1
Mr = 340.39F(000) = 178
Triclinic, P1Dx = 1.345 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.888 (2) ÅCell parameters from 1465 reflections
b = 7.381 (3) Åθ = 2.3–25.0°
c = 9.638 (4) ŵ = 0.09 mm1
α = 101.674 (6)°T = 298 K
β = 96.233 (6)°Plate, yellow
γ = 116.046 (5)°0.40 × 0.24 × 0.18 mm
V = 420.1 (3) Å3
Bruker SMART CCD area-detector diffractometer1465 independent reflections
Radiation source: fine-focus sealed tube1239 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 25.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −8→8
Tmin = 0.967, Tmax = 0.995k = −8→8
3956 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H-atom parameters constrained
S = 1.27w = 1/[σ2(Fo2) + (0.0542P)2 + 0.1572P] where P = (Fo2 + 2Fc2)/3
1465 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.13 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4604 (3)0.2446 (3)0.5782 (2)0.0439 (6)
N20.0673 (3)0.2571 (3)0.4735 (2)0.0405 (6)
N30.0679 (3)0.3587 (3)0.8476 (2)0.0425 (6)
C10.5203 (4)0.1943 (4)0.3355 (3)0.0482 (7)
H10.64880.18810.36820.058*
C20.4561 (5)0.1772 (4)0.1921 (3)0.0518 (8)
H20.54250.16080.12800.062*
C30.2624 (5)0.1841 (4)0.1406 (3)0.0522 (8)
H30.22160.17350.04290.063*
C40.1338 (4)0.2062 (4)0.2329 (3)0.0473 (7)
H40.00320.20700.19750.057*
C50.1963 (4)0.2279 (4)0.3820 (3)0.0374 (6)
C60.3918 (4)0.2210 (4)0.4334 (3)0.0381 (6)
C70.3349 (4)0.2733 (4)0.6617 (3)0.0429 (7)
H70.37640.28970.76040.051*
C80.1382 (4)0.2813 (4)0.6116 (3)0.0371 (6)
C90.0064 (4)0.3217 (4)0.7124 (3)0.0419 (6)
H9−0.12510.31980.67540.050*
C10−0.0707 (4)0.3998 (4)0.9395 (3)0.0438 (7)
H10A−0.14150.28350.98040.053*
H10B−0.18570.41330.88200.053*
U11U22U33U12U13U23
N10.0419 (12)0.0551 (14)0.0405 (12)0.0272 (11)0.0095 (10)0.0150 (10)
N20.0409 (12)0.0465 (13)0.0350 (12)0.0231 (11)0.0064 (9)0.0084 (10)
N30.0463 (13)0.0504 (13)0.0342 (12)0.0257 (11)0.0108 (9)0.0113 (10)
C10.0440 (15)0.0514 (17)0.0495 (16)0.0233 (14)0.0136 (13)0.0113 (13)
C20.0565 (18)0.0512 (17)0.0433 (16)0.0210 (14)0.0221 (13)0.0093 (13)
C30.0596 (18)0.0568 (18)0.0332 (14)0.0228 (15)0.0095 (13)0.0101 (13)
C40.0497 (16)0.0554 (18)0.0345 (14)0.0243 (14)0.0039 (12)0.0122 (12)
C50.0375 (14)0.0327 (13)0.0385 (14)0.0138 (11)0.0077 (11)0.0098 (11)
C60.0380 (13)0.0377 (14)0.0372 (13)0.0173 (12)0.0074 (11)0.0096 (11)
C70.0448 (15)0.0524 (16)0.0313 (13)0.0233 (13)0.0052 (11)0.0127 (12)
C80.0368 (13)0.0367 (14)0.0357 (14)0.0173 (11)0.0061 (11)0.0071 (11)
C90.0414 (15)0.0457 (16)0.0406 (15)0.0229 (13)0.0076 (12)0.0113 (12)
C100.0443 (15)0.0528 (17)0.0368 (14)0.0235 (13)0.0139 (11)0.0139 (12)
N1—C71.298 (3)C3—H30.9300
N1—C61.373 (3)C4—C51.410 (3)
N2—C81.315 (3)C4—H40.9300
N2—C51.369 (3)C5—C61.409 (3)
N3—C91.260 (3)C7—C81.418 (3)
N3—C101.455 (3)C7—H70.9300
C1—C21.367 (4)C8—C91.472 (3)
C1—C61.404 (3)C9—H90.9300
C1—H10.9300C10—C10i1.512 (5)
C2—C31.398 (4)C10—H10A0.9700
C2—H20.9300C10—H10B0.9700
C3—C41.357 (4)
C7—N1—C6115.8 (2)N1—C6—C1119.7 (2)
C8—N2—C5116.2 (2)N1—C6—C5120.9 (2)
C9—N3—C10117.9 (2)C1—C6—C5119.4 (2)
C2—C1—C6119.9 (3)N1—C7—C8124.0 (2)
C2—C1—H1120.1N1—C7—H7118.0
C6—C1—H1120.1C8—C7—H7118.0
C1—C2—C3121.0 (3)N2—C8—C7121.6 (2)
C1—C2—H2119.5N2—C8—C9116.9 (2)
C3—C2—H2119.5C7—C8—C9121.5 (2)
C4—C3—C2120.1 (3)N3—C9—C8121.5 (2)
C4—C3—H3120.0N3—C9—H9119.3
C2—C3—H3120.0C8—C9—H9119.3
C3—C4—C5120.7 (3)N3—C10—C10109.5 (3)
C3—C4—H4119.7N3—C10—H10A109.8
C5—C4—H4119.7C10—C10—H10A109.8
N2—C5—C6121.6 (2)N3—C10—H10B109.8
N2—C5—C4119.4 (2)C10—C10—H10B109.8
C6—C5—C4119.0 (2)H10A—C10—H10B108.2
D—H···AD—HH···AD···AD—H···A
C1—H1···N2ii0.932.733.647 (4)168
C9—H9···N1iii0.932.673.593 (3)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1⋯N2i0.932.733.647 (4)168
C9—H9⋯N1ii0.932.673.593 (3)169

Symmetry codes: (i) ; (ii) .

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