Literature DB >> 21582621

(Z)-2-Amino-3-[(E)-benzyl-ideneamino]but-2-enedinitrile.

G Varsha1, V Arun, Manju Sebastian, P Leeju, Digna Varghese, K K M Yusuff.   

Abstract

The asymmetric unit of the title compound, C(11)H(8)N(4), contains two independent mol-ecules. In the crystal structure, inter-molecular N-H⋯N hydrogen bonds link mol-ecules into ribbons extended in the [100] direction.

Entities:  

Year:  2009        PMID: 21582621      PMCID: PMC2968917          DOI: 10.1107/S1600536809010873

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For some properties of Schiff base ligands, see: Arun, Robinson et al. (2009 ▶); Arun, Sridevi et al. (2009 ▶). For related structures, see: MacLachlan et al. (1996 ▶); Mague & Eduok (2000 ▶); Varghese et al. (2009 ▶).

Experimental

Crystal data

C11H8N4 M = 196.21 Monoclinic, a = 6.9569 (19) Å b = 22.796 (6) Å c = 13.516 (4) Å β = 100.983 (5)° V = 2104.2 (10) Å3 Z = 8 Mo Kα radiation radiation μ = 0.08 mm−1 T = 298 K 0.42 × 0.18 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.980, T max = 0.984 12239 measured reflections 4173 independent reflections 3216 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.106 wR(F 2) = 0.214 S = 1.29 4173 reflections 272 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809010873/cv2533sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809010873/cv2533Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H8N4F(000) = 816
Mr = 196.21Dx = 1.239 Mg m3
Monoclinic, P21/cMo Kα radiation radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4803 reflections
a = 6.9569 (19) Åθ = 2.4–26.1°
b = 22.796 (6) ŵ = 0.08 mm1
c = 13.516 (4) ÅT = 298 K
β = 100.983 (5)°Rod, yellow
V = 2104.2 (10) Å30.42 × 0.18 × 0.18 mm
Z = 8
Bruker SMART APEX CCD area-detector diffractometer4173 independent reflections
Radiation source: fine-focus sealed tube3216 reflections with I > 2σ(I)
graphiteRint = 0.036
φ and ω scansθmax = 26.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −8→8
Tmin = 0.980, Tmax = 0.984k = −28→23
12239 measured reflectionsl = −16→15
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.106H-atom parameters constrained
wR(F2) = 0.214w = 1/[σ2(Fo2) + (0.0476P)2 + 1.6604P] where P = (Fo2 + 2Fc2)/3
S = 1.29(Δ/σ)max < 0.001
4173 reflectionsΔρmax = 0.22 e Å3
272 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0021 (6)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3264 (5)0.39467 (14)0.3626 (2)0.0398 (8)
C20.3971 (6)0.34110 (16)0.3379 (3)0.0590 (11)
H20.51960.33870.32020.071*
C30.2851 (8)0.29092 (19)0.3397 (4)0.0772 (14)
H30.33240.25480.32290.093*
C40.1054 (8)0.2944 (2)0.3661 (4)0.0792 (15)
H40.03130.26060.36770.095*
C50.0339 (6)0.3473 (2)0.3902 (3)0.0673 (12)
H5−0.08870.34940.40780.081*
C60.1427 (5)0.39773 (17)0.3883 (3)0.0501 (9)
H60.09330.43370.40430.060*
C70.4454 (5)0.44731 (14)0.3591 (3)0.0388 (8)
H70.56840.44360.34220.047*
C80.5013 (4)0.54703 (14)0.3760 (2)0.0366 (8)
C90.4227 (5)0.60037 (14)0.3899 (3)0.0397 (8)
C100.6996 (5)0.54341 (15)0.3605 (3)0.0469 (9)
C110.5356 (5)0.65316 (15)0.3859 (3)0.0459 (9)
N10.3855 (4)0.49769 (11)0.3784 (2)0.0367 (7)
N20.2412 (4)0.60811 (13)0.4084 (2)0.0558 (9)
H2A0.16730.57830.41220.067*
H2B0.19910.64290.41650.067*
N30.8559 (5)0.53781 (16)0.3485 (3)0.0764 (12)
N40.6208 (5)0.69534 (14)0.3808 (3)0.0693 (11)
C120.2008 (5)0.53605 (15)0.1295 (3)0.0452 (9)
C130.3849 (5)0.53053 (17)0.1052 (3)0.0550 (10)
H130.43120.49340.09330.066*
C140.4994 (7)0.5783 (2)0.0985 (4)0.0736 (13)
H140.62240.57390.08190.088*
C150.4310 (8)0.6331 (2)0.1165 (4)0.0823 (16)
H150.50780.66590.11090.099*
C160.2515 (9)0.64021 (18)0.1425 (4)0.0821 (16)
H160.20900.67750.15620.098*
C170.1334 (7)0.59197 (17)0.1484 (3)0.0639 (12)
H170.01040.59670.16480.077*
C180.0775 (5)0.48496 (15)0.1349 (3)0.0450 (9)
H18−0.04320.48990.15380.054*
C190.0133 (4)0.38528 (14)0.1179 (3)0.0379 (8)
C200.0863 (5)0.33203 (15)0.0987 (3)0.0416 (8)
C21−0.1801 (5)0.38947 (15)0.1396 (3)0.0450 (9)
C22−0.0336 (6)0.28020 (17)0.0983 (3)0.0540 (10)
N50.1316 (4)0.43361 (12)0.1143 (2)0.0396 (7)
N60.2648 (4)0.32364 (12)0.0767 (2)0.0555 (9)
H6A0.34100.35310.07410.067*
H6B0.30280.28880.06520.067*
N7−0.3334 (4)0.39419 (15)0.1568 (3)0.0660 (10)
N8−0.1258 (5)0.23914 (15)0.0977 (3)0.0809 (13)
U11U22U33U12U13U23
C10.0501 (19)0.0328 (18)0.0338 (19)−0.0032 (15)0.0015 (15)0.0035 (15)
C20.070 (3)0.036 (2)0.069 (3)0.0021 (19)0.007 (2)0.002 (2)
C30.112 (4)0.035 (2)0.079 (3)−0.002 (3)0.006 (3)0.005 (2)
C40.110 (4)0.053 (3)0.070 (3)−0.038 (3)0.006 (3)0.010 (2)
C50.067 (3)0.069 (3)0.064 (3)−0.026 (2)0.009 (2)0.003 (2)
C60.056 (2)0.042 (2)0.052 (2)−0.0072 (17)0.0069 (18)0.0007 (18)
C70.0369 (17)0.0353 (19)0.045 (2)0.0016 (14)0.0104 (15)−0.0001 (15)
C80.0334 (16)0.0365 (19)0.0387 (19)−0.0038 (14)0.0042 (14)−0.0004 (15)
C90.0413 (18)0.0328 (18)0.044 (2)−0.0093 (15)0.0064 (15)0.0002 (16)
C100.044 (2)0.039 (2)0.059 (2)−0.0075 (16)0.0116 (17)−0.0016 (17)
C110.051 (2)0.034 (2)0.050 (2)−0.0021 (17)0.0028 (17)0.0064 (17)
N10.0324 (13)0.0315 (15)0.0451 (17)−0.0031 (12)0.0045 (12)0.0013 (13)
N20.0506 (17)0.0364 (17)0.085 (3)−0.0009 (14)0.0238 (17)−0.0085 (16)
N30.0413 (18)0.066 (2)0.127 (4)−0.0080 (17)0.030 (2)−0.011 (2)
N40.078 (2)0.038 (2)0.089 (3)−0.0181 (18)0.010 (2)0.0034 (18)
C120.057 (2)0.0302 (19)0.042 (2)−0.0028 (16)−0.0046 (17)0.0012 (16)
C130.060 (2)0.048 (2)0.057 (3)−0.0086 (19)0.010 (2)0.0004 (19)
C140.085 (3)0.058 (3)0.077 (3)−0.026 (2)0.013 (3)−0.002 (2)
C150.109 (4)0.060 (3)0.070 (3)−0.038 (3)−0.005 (3)0.007 (3)
C160.125 (4)0.022 (2)0.084 (4)−0.002 (3)−0.018 (3)0.002 (2)
C170.078 (3)0.040 (2)0.067 (3)0.009 (2)−0.006 (2)−0.006 (2)
C180.0454 (19)0.044 (2)0.045 (2)0.0033 (16)0.0091 (16)−0.0035 (17)
C190.0361 (16)0.0337 (19)0.043 (2)−0.0032 (14)0.0058 (15)0.0029 (15)
C200.0466 (19)0.0349 (19)0.043 (2)−0.0065 (15)0.0083 (16)−0.0014 (16)
C210.0450 (19)0.038 (2)0.051 (2)−0.0029 (16)0.0064 (17)−0.0022 (17)
C220.054 (2)0.041 (2)0.070 (3)−0.0045 (18)0.017 (2)−0.006 (2)
N50.0410 (15)0.0309 (15)0.0456 (17)−0.0022 (12)0.0050 (13)−0.0021 (13)
N60.0520 (18)0.0287 (16)0.093 (3)0.0009 (14)0.0315 (18)−0.0022 (16)
N70.0443 (18)0.070 (2)0.088 (3)−0.0002 (17)0.0241 (18)0.002 (2)
N80.072 (2)0.046 (2)0.127 (4)−0.0218 (19)0.026 (2)−0.005 (2)
C1—C21.381 (5)C12—C131.387 (5)
C1—C61.389 (5)C12—C171.398 (5)
C1—C71.464 (4)C12—C181.457 (5)
C2—C31.387 (6)C13—C141.362 (5)
C2—H20.9300C13—H130.9300
C3—C41.365 (7)C14—C151.375 (6)
C3—H30.9300C14—H140.9300
C4—C51.369 (6)C15—C161.370 (7)
C4—H40.9300C15—H150.9300
C5—C61.378 (5)C16—C171.384 (6)
C5—H50.9300C16—H160.9300
C6—H60.9300C17—H170.9300
C7—N11.266 (4)C18—N51.276 (4)
C7—H70.9300C18—H180.9300
C8—C91.360 (4)C19—C201.360 (4)
C8—N11.387 (4)C19—N51.382 (4)
C8—C101.437 (4)C19—C211.434 (4)
C9—N21.345 (4)C20—N61.344 (4)
C9—C111.443 (4)C20—C221.446 (5)
C10—N31.136 (4)C21—N71.139 (4)
C11—N41.138 (4)C22—N81.134 (4)
N2—H2A0.8600N6—H6A0.8600
N2—H2B0.8600N6—H6B0.8600
C2—C1—C6119.5 (3)C13—C12—C17118.9 (4)
C2—C1—C7119.2 (3)C13—C12—C18121.2 (3)
C6—C1—C7121.3 (3)C17—C12—C18119.9 (4)
C1—C2—C3119.9 (4)C14—C13—C12121.4 (4)
C1—C2—H2120.1C14—C13—H13119.3
C3—C2—H2120.1C12—C13—H13119.3
C4—C3—C2120.1 (4)C13—C14—C15119.2 (5)
C4—C3—H3119.9C13—C14—H14120.4
C2—C3—H3119.9C15—C14—H14120.4
C3—C4—C5120.3 (4)C16—C15—C14121.1 (4)
C3—C4—H4119.8C16—C15—H15119.5
C5—C4—H4119.8C14—C15—H15119.5
C4—C5—C6120.3 (4)C15—C16—C17120.1 (4)
C4—C5—H5119.8C15—C16—H16120.0
C6—C5—H5119.8C17—C16—H16120.0
C5—C6—C1119.8 (4)C16—C17—C12119.4 (4)
C5—C6—H6120.1C16—C17—H17120.3
C1—C6—H6120.1C12—C17—H17120.3
N1—C7—C1121.8 (3)N5—C18—C12121.4 (3)
N1—C7—H7119.1N5—C18—H18119.3
C1—C7—H7119.1C12—C18—H18119.3
C9—C8—N1118.1 (3)C20—C19—N5117.3 (3)
C9—C8—C10119.6 (3)C20—C19—C21119.9 (3)
N1—C8—C10122.3 (3)N5—C19—C21122.9 (3)
N2—C9—C8124.0 (3)N6—C20—C19124.3 (3)
N2—C9—C11115.7 (3)N6—C20—C22116.1 (3)
C8—C9—C11120.3 (3)C19—C20—C22119.6 (3)
N3—C10—C8176.8 (4)N7—C21—C19178.4 (4)
N4—C11—C9178.2 (4)N8—C22—C20179.1 (4)
C7—N1—C8121.0 (3)C18—N5—C19121.4 (3)
C9—N2—H2A120.0C20—N6—H6A120.0
C9—N2—H2B120.0C20—N6—H6B120.0
H2A—N2—H2B120.0H6A—N6—H6B120.0
D—H···AD—HH···AD···AD—H···A
N2—H2A···N3i0.862.363.096 (4)144
N2—H2B···N8ii0.862.253.090 (5)165
N6—H6A···N7iii0.862.513.228 (5)142
N6—H6B···N4iv0.862.283.057 (4)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯N3i0.862.363.096 (4)144
N2—H2B⋯N8ii0.862.253.090 (5)165
N6—H6A⋯N7iii0.862.513.228 (5)142
N6—H6B⋯N4iv0.862.283.057 (4)150

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Coordination Compounds of Schiff-Base Ligands Derived from Diaminomaleonitrile (DMN): Mononuclear, Dinuclear, and Macrocyclic Derivatives.

Authors:  Mark J. MacLachlan; Murray K. Park; Laurence K. Thompson
Journal:  Inorg Chem       Date:  1996-09-11       Impact factor: 5.165

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  N,N'-Bis[(E)-quinoxalin-2-ylmethyl-idene]-ethane-1,2-diamine.

Authors:  Digna Varghese; V Arun; Manju Sebastian; P Leeju; G Varsha; K K M Yusuff
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-31

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  N-[(E)-Quinoxalin-2-ylmethyl-idene]-1H-indazol-5-amine.

Authors:  P Leeju; V Arun; Manju Sebastian; G Varsha; Digna Varghese; K K M Yusuff
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25
  1 in total

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