Literature DB >> 21581957

5-{[(3R,5aS,6R,8aS,9R,10S,12R,12aR)-3,6,9-Trimethyl-perhydro-3,12-ep-oxy-1,2-dioxepino[4,3-i]isochromen-10-yl]oxymeth-yl}benzene-1,3-diol.

Waseem Gul, Paulo Carvalho, Ahmed Galal, Mitchell A Avery, Mahmoud A El Sohly.   

Abstract

The title compound, C(22)H(30)O(7), is a fused five-ring system that is of inter-est for its anti-cancer and anti-malarial activity. The six-membered C(6) and C(5)O rings display chair conformations. The six-membered C(3)O(3) ring containing the ether and per-oxy functionalities has a distorted boat conformation, with a C-O-O-C torsion angle of 42.6 (1)° for the per-oxy group. The seven-membered C(6)O ring has a distorted boat-type conformation, while the seven-membered C(5)O(2) ring has a very distorted chair-type conformation. The structure contains inter-molecular O-H⋯O and O-H⋯(O,O) bonds that link the mol-ecules into sheets parallel to the (100) planes.

Entities:  

Year:  2009        PMID: 21581957      PMCID: PMC2968296          DOI: 10.1107/S1600536809002050

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystallographic analysis of artemisinin, see: Lisgarten et al. (1998 ▶). For anti­malarial and anti­tumor activity of artemisinin, see Beekman et al. (1997 ▶, 1998 ▶); Pu et al. (1995 ▶); Zheng (1994 ▶).

Experimental

Crystal data

C22H30O7 M = 406.46 Monoclinic, a = 10.3088 (2) Å b = 10.2844 (2) Å c = 10.3218 (3) Å β = 113.14 (1)° V = 1006.29 (9) Å3 Z = 2 Cu Kα radiation μ = 0.82 mm−1 T = 100 (2) K 0.23 × 0.15 × 0.08 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: none 15943 measured reflections 3623 independent reflections 3604 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.069 S = 1.08 3623 reflections 267 parameters 1 restraint H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1623 Friedel pairs Flack parameter: 0.04 (10) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: ORTEP-3 for Windows (Farrugia, 1997 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809002050/bi2336sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809002050/bi2336Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H30O7F(000) = 436
Mr = 406.46Dx = 1.341 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ybCell parameters from 9920 reflections
a = 10.3088 (2) Åθ = 4.3–68.9°
b = 10.2844 (2) ŵ = 0.82 mm1
c = 10.3218 (3) ÅT = 100 K
β = 113.14 (1)°Plate, colourless
V = 1006.29 (9) Å30.23 × 0.15 × 0.08 mm
Z = 2
Bruker APEXII CCD diffractometer3604 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube, Siemens KFF Cu 2 K90Rint = 0.019
graphiteθmax = 69.3°, θmin = 4.7°
φ and ω scansh = −12→12
15943 measured reflectionsk = −11→12
3623 independent reflectionsl = −12→12
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0416P)2 + 0.199P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
3623 reflectionsΔρmax = 0.25 e Å3
267 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 1623 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.24620 (9)0.53498 (9)0.32197 (9)0.01671 (19)
O1−0.02356 (10)0.56559 (9)0.09293 (9)0.0177 (2)
O60.41598 (11)0.67491 (10)1.04175 (10)0.0238 (2)
H60.37350.60571.01940.036*
O50.34731 (9)0.70855 (9)0.47383 (9)0.01720 (19)
O30.07779 (9)0.40591 (9)0.33999 (9)0.0184 (2)
O70.71639 (10)0.95263 (9)0.93260 (10)0.0213 (2)
H70.76080.95780.88200.032*
O20.02421 (10)0.42912 (9)0.10142 (9)0.0191 (2)
C180.58553 (13)0.79300 (13)0.75672 (13)0.0177 (3)
H180.62490.82150.69460.021*
C1−0.01197 (14)0.36064 (14)0.20186 (14)0.0204 (3)
C200.56095 (14)0.81251 (13)0.97930 (13)0.0178 (3)
H200.58280.85541.06460.021*
C100.31061 (13)0.66001 (13)0.33627 (13)0.0172 (3)
H100.39730.65050.31950.021*
C80.06357 (14)0.75832 (13)0.22778 (13)0.0166 (3)
H80.00180.79650.13760.020*
C4−0.13890 (13)0.62313 (15)0.24865 (13)0.0193 (3)
H4−0.20790.65790.15990.023*
C110.11686 (13)0.53590 (13)0.34304 (13)0.0158 (3)
H110.13530.57130.43680.019*
C120.00544 (13)0.62013 (13)0.23280 (13)0.0161 (3)
C220.43232 (13)0.64640 (13)0.81424 (14)0.0184 (3)
H220.37030.57630.79050.022*
C70.05456 (14)0.84730 (14)0.34327 (14)0.0198 (3)
H7A0.11910.81610.43460.024*
H7B0.08340.93450.33050.024*
C5−0.13896 (13)0.71641 (15)0.36552 (13)0.0221 (3)
H5−0.06850.68480.45510.026*
C150.28159 (15)0.88607 (14)0.23539 (15)0.0233 (3)
H15A0.30430.92210.32760.035*
H15B0.21710.94280.16600.035*
H15C0.36620.87710.21830.035*
C14−0.28261 (14)0.71858 (18)0.37886 (15)0.0297 (3)
H14A−0.28270.78610.44300.044*
H14B−0.29860.63620.41370.044*
H14C−0.35610.73480.28810.044*
C170.48996 (13)0.69005 (13)0.72052 (13)0.0174 (3)
C6−0.09417 (15)0.85158 (15)0.34012 (14)0.0231 (3)
H6A−0.09710.91060.41230.028*
H6B−0.15900.88360.24930.028*
C160.44908 (14)0.62693 (14)0.57838 (14)0.0200 (3)
H16A0.53180.61600.55660.024*
H16B0.40870.54180.57880.024*
C90.21337 (13)0.75281 (13)0.22646 (13)0.0178 (3)
H90.20170.71670.13470.021*
C210.46825 (13)0.70848 (14)0.94374 (13)0.0186 (3)
C190.62111 (13)0.85242 (13)0.88701 (14)0.0173 (3)
C3−0.19196 (14)0.48755 (15)0.26635 (14)0.0237 (3)
H3A−0.14690.46320.36490.028*
H3B−0.29250.49320.24320.028*
C2−0.16688 (14)0.37942 (15)0.17856 (14)0.0234 (3)
H2A−0.22070.39820.07970.028*
H2B−0.20240.29860.20040.028*
C130.02745 (16)0.22097 (15)0.19089 (15)0.0262 (3)
H13A−0.03930.18350.10550.039*
H13B0.02670.17290.27030.039*
H13C0.12010.21760.18990.039*
U11U22U33U12U13U23
O40.0160 (4)0.0163 (5)0.0179 (4)−0.0009 (3)0.0068 (4)−0.0024 (3)
O10.0225 (5)0.0173 (5)0.0130 (4)−0.0007 (4)0.0067 (4)−0.0007 (4)
O60.0285 (5)0.0254 (5)0.0221 (5)−0.0052 (4)0.0149 (4)0.0005 (4)
O50.0169 (4)0.0187 (5)0.0140 (4)0.0006 (4)0.0039 (3)−0.0015 (3)
O30.0215 (5)0.0181 (5)0.0140 (4)−0.0030 (4)0.0051 (4)−0.0005 (3)
O70.0232 (5)0.0217 (5)0.0232 (5)−0.0058 (4)0.0138 (4)−0.0047 (4)
O20.0234 (5)0.0183 (5)0.0170 (4)−0.0016 (4)0.0094 (4)−0.0024 (4)
C180.0191 (6)0.0192 (7)0.0165 (6)0.0030 (5)0.0088 (5)0.0022 (5)
C10.0246 (7)0.0215 (7)0.0146 (6)−0.0075 (5)0.0072 (5)−0.0028 (5)
C200.0185 (6)0.0203 (7)0.0145 (6)0.0029 (5)0.0063 (5)−0.0002 (5)
C100.0165 (6)0.0197 (7)0.0162 (6)−0.0034 (5)0.0074 (5)−0.0032 (5)
C80.0192 (6)0.0167 (7)0.0134 (6)0.0021 (5)0.0060 (5)0.0014 (5)
C40.0149 (6)0.0279 (7)0.0146 (6)0.0008 (5)0.0052 (5)0.0002 (5)
C110.0177 (6)0.0158 (7)0.0149 (6)−0.0018 (5)0.0075 (5)−0.0022 (5)
C120.0176 (6)0.0202 (7)0.0109 (6)−0.0015 (5)0.0060 (5)−0.0016 (5)
C220.0147 (6)0.0170 (7)0.0220 (6)−0.0001 (5)0.0055 (5)0.0005 (5)
C70.0229 (7)0.0170 (7)0.0185 (6)0.0017 (5)0.0072 (5)−0.0011 (5)
C50.0178 (6)0.0329 (8)0.0153 (6)0.0039 (6)0.0063 (5)0.0005 (6)
C150.0253 (7)0.0239 (8)0.0213 (7)−0.0053 (6)0.0097 (6)−0.0003 (6)
C140.0222 (7)0.0464 (10)0.0225 (7)0.0053 (7)0.0112 (6)−0.0023 (7)
C170.0150 (5)0.0182 (7)0.0174 (6)0.0050 (5)0.0045 (5)0.0015 (5)
C60.0249 (7)0.0269 (8)0.0177 (6)0.0080 (6)0.0086 (5)−0.0015 (6)
C160.0190 (6)0.0200 (7)0.0190 (6)0.0032 (5)0.0053 (5)0.0005 (5)
C90.0195 (6)0.0209 (7)0.0139 (6)−0.0036 (5)0.0075 (5)−0.0016 (5)
C210.0159 (6)0.0215 (7)0.0189 (6)0.0038 (5)0.0075 (5)0.0044 (5)
C190.0147 (6)0.0164 (7)0.0199 (6)0.0019 (5)0.0058 (5)0.0023 (5)
C30.0178 (6)0.0346 (8)0.0196 (6)−0.0045 (6)0.0082 (5)0.0006 (6)
C20.0227 (7)0.0279 (8)0.0190 (6)−0.0101 (6)0.0075 (5)−0.0011 (5)
C130.0335 (7)0.0225 (8)0.0213 (7)−0.0056 (6)0.0094 (6)−0.0031 (6)
O4—C101.4280 (16)C11—H110.980
O4—C111.4328 (15)C22—C171.3936 (19)
O1—C121.4660 (15)C22—C211.3937 (19)
O1—O21.4785 (13)C22—H220.930
O6—C211.3644 (16)C7—C61.5214 (19)
O6—H60.820C7—H7A0.970
O5—C101.4092 (15)C7—H7B0.970
O5—C161.4423 (16)C5—C61.520 (2)
O3—C111.3930 (17)C5—C141.5403 (17)
O3—C11.4384 (15)C5—H50.980
O7—C191.3730 (16)C15—C91.5266 (19)
O7—H70.820C15—H15A0.960
O2—C11.4191 (16)C15—H15B0.960
C18—C191.3888 (18)C15—H15C0.960
C18—C171.3936 (19)C14—H14A0.960
C18—H180.930C14—H14B0.960
C1—C131.509 (2)C14—H14C0.960
C1—C21.5308 (19)C17—C161.5052 (18)
C20—C211.3845 (19)C6—H6A0.970
C20—C191.3874 (18)C6—H6B0.970
C20—H200.930C16—H16A0.970
C10—C91.5190 (18)C16—H16B0.970
C10—H100.980C9—H90.980
C8—C71.5344 (18)C3—C21.520 (2)
C8—C91.5506 (17)C3—H3A0.970
C8—C121.5512 (18)C3—H3B0.970
C8—H80.980C2—H2A0.970
C4—C31.535 (2)C2—H2B0.970
C4—C51.5415 (19)C13—H13A0.960
C4—C121.5598 (16)C13—H13B0.960
C4—H40.980C13—H13C0.960
C11—C121.5289 (17)
C10—O4—C11113.64 (9)C6—C5—H5107.7
C12—O1—O2111.75 (9)C14—C5—H5107.7
C21—O6—H6109.5C4—C5—H5107.7
C10—O5—C16112.09 (10)C9—C15—H15A109.5
C11—O3—C1113.63 (10)C9—C15—H15B109.5
C19—O7—H7109.5H15A—C15—H15B109.5
C1—O2—O1109.72 (9)C9—C15—H15C109.5
C19—C18—C17118.94 (12)H15A—C15—H15C109.5
C19—C18—H18120.5H15B—C15—H15C109.5
C17—C18—H18120.5C5—C14—H14A109.5
O2—C1—O3108.18 (10)C5—C14—H14B109.5
O2—C1—C13105.17 (11)H14A—C14—H14B109.5
O3—C1—C13107.17 (11)C5—C14—H14C109.5
O2—C1—C2112.33 (11)H14A—C14—H14C109.5
O3—C1—C2109.88 (10)H14B—C14—H14C109.5
C13—C1—C2113.79 (11)C22—C17—C18120.53 (12)
C21—C20—C19119.65 (12)C22—C17—C16120.35 (12)
C21—C20—H20120.2C18—C17—C16119.12 (12)
C19—C20—H20120.2C5—C6—C7109.99 (11)
O5—C10—O4110.67 (10)C5—C6—H6A109.7
O5—C10—C9111.50 (10)C7—C6—H6A109.7
O4—C10—C9110.18 (10)C5—C6—H6B109.7
O5—C10—H10108.1C7—C6—H6B109.7
O4—C10—H10108.1H6A—C6—H6B108.2
C9—C10—H10108.1O5—C16—C17108.73 (10)
C7—C8—C9113.15 (11)O5—C16—H16A109.9
C7—C8—C12112.23 (10)C17—C16—H16A109.9
C9—C8—C12111.46 (10)O5—C16—H16B109.9
C7—C8—H8106.5C17—C16—H16B109.9
C9—C8—H8106.5H16A—C16—H16B108.3
C12—C8—H8106.5C10—C9—C15111.45 (11)
C3—C4—C5111.25 (11)C10—C9—C8112.57 (10)
C3—C4—C12113.19 (11)C15—C9—C8113.79 (11)
C5—C4—C12112.84 (10)C10—C9—H9106.1
C3—C4—H4106.3C15—C9—H9106.1
C5—C4—H4106.3C8—C9—H9106.1
C12—C4—H4106.3O6—C21—C20115.57 (12)
O3—C11—O4105.56 (10)O6—C21—C22124.17 (12)
O3—C11—C12113.63 (10)C20—C21—C22120.26 (12)
O4—C11—C12111.25 (10)O7—C19—C20116.06 (11)
O3—C11—H11108.8O7—C19—C18122.91 (11)
O4—C11—H11108.8C20—C19—C18121.03 (12)
C12—C11—H11108.8C2—C3—C4116.22 (11)
O1—C12—C11108.60 (10)C2—C3—H3A108.2
O1—C12—C8104.45 (9)C4—C3—H3A108.2
C11—C12—C8110.91 (10)C2—C3—H3B108.2
O1—C12—C4106.09 (10)C4—C3—H3B108.2
C11—C12—C4113.69 (10)H3A—C3—H3B107.4
C8—C12—C4112.48 (11)C3—C2—C1114.21 (11)
C17—C22—C21119.54 (12)C3—C2—H2A108.7
C17—C22—H22120.2C1—C2—H2A108.7
C21—C22—H22120.2C3—C2—H2B108.7
C6—C7—C8111.64 (11)C1—C2—H2B108.7
C6—C7—H7A109.3H2A—C2—H2B107.6
C8—C7—H7A109.3C1—C13—H13A109.5
C6—C7—H7B109.3C1—C13—H13B109.5
C8—C7—H7B109.3H13A—C13—H13B109.5
H7A—C7—H7B108.0C1—C13—H13C109.5
C6—C5—C14111.72 (12)H13A—C13—H13C109.5
C6—C5—C4109.92 (11)H13B—C13—H13C109.5
C14—C5—C4112.02 (11)
D—H···AD—HH···AD···AD—H···A
O6—H6···O7i0.821.992.7279 (14)150
O7—H7···O2ii0.822.182.8409 (13)138
O7—H7···O4ii0.822.222.9269 (13)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6⋯O7i0.821.992.7279 (14)150
O7—H7⋯O2ii0.822.182.8409 (13)138
O7—H7⋯O4ii0.822.222.9269 (13)144

Symmetry codes: (i) ; (ii) .

  5 in total

1.  Stereochemistry-dependent cytotoxicity of some artemisinin derivatives.

Authors:  A C Beekman; A R Barentsen; H J Woerdenbag; W Van Uden; N Pras; A W Konings; F S el-Feraly; A M Galal; H V Wikström
Journal:  J Nat Prod       Date:  1997-04       Impact factor: 4.050

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antimalarial activities of several fluorinated artemisinin derivatives.

Authors:  Y M Pu; D S Torok; H Ziffer; X Q Pan; S R Meshnick
Journal:  J Med Chem       Date:  1995-09-29       Impact factor: 7.446

4.  Artemisinin-derived sesquiterpene lactones as potential antitumour compounds: cytotoxic action against bone marrow and tumour cells.

Authors:  A C Beekman; P K Wierenga; H J Woerdenbag; W Van Uden; N Pras; A W Konings; F S el-Feraly; A M Galal; H V Wikström
Journal:  Planta Med       Date:  1998-10       Impact factor: 3.352

5.  Cytotoxic terpenoids and flavonoids from Artemisia annua.

Authors:  G Q Zheng
Journal:  Planta Med       Date:  1994-02       Impact factor: 3.352

  5 in total
  1 in total

1.  (1R,3S,4R,4aS,7R,7aS,10R,12aR)-3-Azido-4,7,10-trimethyl-1,10-epidioxy-per-hydropyrano[4,3-j][1,2]benzodiox-epine.

Authors:  Lijun Xie; Xin Zhai; Jian Zuo; Yanfang Zhao; Ping Gong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26
  1 in total

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