| Literature DB >> 21581957 |
Waseem Gul, Paulo Carvalho, Ahmed Galal, Mitchell A Avery, Mahmoud A El Sohly.
Abstract
The title compound, C(22)H(30)O(7), is a fused five-ring system that is of inter-est for its anti-cancer and anti-malarial activity. The six-membered C(6) and C(5)O rings display chair conformations. The six-membered C(3)O(3) ring containing the ether and per-oxy functionalities has a distorted boat conformation, with a C-O-O-C torsion angle of 42.6 (1)° for the per-oxy group. The seven-membered C(6)O ring has a distorted boat-type conformation, while the seven-membered C(5)O(2) ring has a very distorted chair-type conformation. The structure contains inter-molecular O-H⋯O and O-H⋯(O,O) bonds that link the mol-ecules into sheets parallel to the (100) planes.Entities:
Year: 2009 PMID: 21581957 PMCID: PMC2968296 DOI: 10.1107/S1600536809002050
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H30O7 | |
| Monoclinic, | Cu |
| Hall symbol: P 2yb | Cell parameters from 9920 reflections |
| θ = 4.3–68.9° | |
| µ = 0.82 mm−1 | |
| β = 113.14 (1)° | Plate, colourless |
| 0.23 × 0.15 × 0.08 mm | |
| Bruker APEXII CCD diffractometer | 3604 reflections with |
| Radiation source: fine-focus sealed tube, Siemens KFF Cu 2 K90 | |
| graphite | θmax = 69.3°, θmin = 4.7° |
| φ and ω scans | |
| 15943 measured reflections | |
| 3623 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3623 reflections | Δρmax = 0.25 e Å−3 |
| 267 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1623 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.04 (10) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O4 | 0.24620 (9) | 0.53498 (9) | 0.32197 (9) | 0.01671 (19) | |
| O1 | −0.02356 (10) | 0.56559 (9) | 0.09293 (9) | 0.0177 (2) | |
| O6 | 0.41598 (11) | 0.67491 (10) | 1.04175 (10) | 0.0238 (2) | |
| H6 | 0.3735 | 0.6057 | 1.0194 | 0.036* | |
| O5 | 0.34731 (9) | 0.70855 (9) | 0.47383 (9) | 0.01720 (19) | |
| O3 | 0.07779 (9) | 0.40591 (9) | 0.33999 (9) | 0.0184 (2) | |
| O7 | 0.71639 (10) | 0.95263 (9) | 0.93260 (10) | 0.0213 (2) | |
| H7 | 0.7608 | 0.9578 | 0.8820 | 0.032* | |
| O2 | 0.02421 (10) | 0.42912 (9) | 0.10142 (9) | 0.0191 (2) | |
| C18 | 0.58553 (13) | 0.79300 (13) | 0.75672 (13) | 0.0177 (3) | |
| H18 | 0.6249 | 0.8215 | 0.6946 | 0.021* | |
| C1 | −0.01197 (14) | 0.36064 (14) | 0.20186 (14) | 0.0204 (3) | |
| C20 | 0.56095 (14) | 0.81251 (13) | 0.97930 (13) | 0.0178 (3) | |
| H20 | 0.5828 | 0.8554 | 1.0646 | 0.021* | |
| C10 | 0.31061 (13) | 0.66001 (13) | 0.33627 (13) | 0.0172 (3) | |
| H10 | 0.3973 | 0.6505 | 0.3195 | 0.021* | |
| C8 | 0.06357 (14) | 0.75832 (13) | 0.22778 (13) | 0.0166 (3) | |
| H8 | 0.0018 | 0.7965 | 0.1376 | 0.020* | |
| C4 | −0.13890 (13) | 0.62313 (15) | 0.24865 (13) | 0.0193 (3) | |
| H4 | −0.2079 | 0.6579 | 0.1599 | 0.023* | |
| C11 | 0.11686 (13) | 0.53590 (13) | 0.34304 (13) | 0.0158 (3) | |
| H11 | 0.1353 | 0.5713 | 0.4368 | 0.019* | |
| C12 | 0.00544 (13) | 0.62013 (13) | 0.23280 (13) | 0.0161 (3) | |
| C22 | 0.43232 (13) | 0.64640 (13) | 0.81424 (14) | 0.0184 (3) | |
| H22 | 0.3703 | 0.5763 | 0.7905 | 0.022* | |
| C7 | 0.05456 (14) | 0.84730 (14) | 0.34327 (14) | 0.0198 (3) | |
| H7A | 0.1191 | 0.8161 | 0.4346 | 0.024* | |
| H7B | 0.0834 | 0.9345 | 0.3305 | 0.024* | |
| C5 | −0.13896 (13) | 0.71641 (15) | 0.36552 (13) | 0.0221 (3) | |
| H5 | −0.0685 | 0.6848 | 0.4551 | 0.026* | |
| C15 | 0.28159 (15) | 0.88607 (14) | 0.23539 (15) | 0.0233 (3) | |
| H15A | 0.3043 | 0.9221 | 0.3276 | 0.035* | |
| H15B | 0.2171 | 0.9428 | 0.1660 | 0.035* | |
| H15C | 0.3662 | 0.8771 | 0.2183 | 0.035* | |
| C14 | −0.28261 (14) | 0.71858 (18) | 0.37886 (15) | 0.0297 (3) | |
| H14A | −0.2827 | 0.7861 | 0.4430 | 0.044* | |
| H14B | −0.2986 | 0.6362 | 0.4137 | 0.044* | |
| H14C | −0.3561 | 0.7348 | 0.2881 | 0.044* | |
| C17 | 0.48996 (13) | 0.69005 (13) | 0.72052 (13) | 0.0174 (3) | |
| C6 | −0.09417 (15) | 0.85158 (15) | 0.34012 (14) | 0.0231 (3) | |
| H6A | −0.0971 | 0.9106 | 0.4123 | 0.028* | |
| H6B | −0.1590 | 0.8836 | 0.2493 | 0.028* | |
| C16 | 0.44908 (14) | 0.62693 (14) | 0.57838 (14) | 0.0200 (3) | |
| H16A | 0.5318 | 0.6160 | 0.5566 | 0.024* | |
| H16B | 0.4087 | 0.5418 | 0.5788 | 0.024* | |
| C9 | 0.21337 (13) | 0.75281 (13) | 0.22646 (13) | 0.0178 (3) | |
| H9 | 0.2017 | 0.7167 | 0.1347 | 0.021* | |
| C21 | 0.46825 (13) | 0.70848 (14) | 0.94374 (13) | 0.0186 (3) | |
| C19 | 0.62111 (13) | 0.85242 (13) | 0.88701 (14) | 0.0173 (3) | |
| C3 | −0.19196 (14) | 0.48755 (15) | 0.26635 (14) | 0.0237 (3) | |
| H3A | −0.1469 | 0.4632 | 0.3649 | 0.028* | |
| H3B | −0.2925 | 0.4932 | 0.2432 | 0.028* | |
| C2 | −0.16688 (14) | 0.37942 (15) | 0.17856 (14) | 0.0234 (3) | |
| H2A | −0.2207 | 0.3982 | 0.0797 | 0.028* | |
| H2B | −0.2024 | 0.2986 | 0.2004 | 0.028* | |
| C13 | 0.02745 (16) | 0.22097 (15) | 0.19089 (15) | 0.0262 (3) | |
| H13A | −0.0393 | 0.1835 | 0.1055 | 0.039* | |
| H13B | 0.0267 | 0.1729 | 0.2703 | 0.039* | |
| H13C | 0.1201 | 0.2176 | 0.1899 | 0.039* |
| O4 | 0.0160 (4) | 0.0163 (5) | 0.0179 (4) | −0.0009 (3) | 0.0068 (4) | −0.0024 (3) |
| O1 | 0.0225 (5) | 0.0173 (5) | 0.0130 (4) | −0.0007 (4) | 0.0067 (4) | −0.0007 (4) |
| O6 | 0.0285 (5) | 0.0254 (5) | 0.0221 (5) | −0.0052 (4) | 0.0149 (4) | 0.0005 (4) |
| O5 | 0.0169 (4) | 0.0187 (5) | 0.0140 (4) | 0.0006 (4) | 0.0039 (3) | −0.0015 (3) |
| O3 | 0.0215 (5) | 0.0181 (5) | 0.0140 (4) | −0.0030 (4) | 0.0051 (4) | −0.0005 (3) |
| O7 | 0.0232 (5) | 0.0217 (5) | 0.0232 (5) | −0.0058 (4) | 0.0138 (4) | −0.0047 (4) |
| O2 | 0.0234 (5) | 0.0183 (5) | 0.0170 (4) | −0.0016 (4) | 0.0094 (4) | −0.0024 (4) |
| C18 | 0.0191 (6) | 0.0192 (7) | 0.0165 (6) | 0.0030 (5) | 0.0088 (5) | 0.0022 (5) |
| C1 | 0.0246 (7) | 0.0215 (7) | 0.0146 (6) | −0.0075 (5) | 0.0072 (5) | −0.0028 (5) |
| C20 | 0.0185 (6) | 0.0203 (7) | 0.0145 (6) | 0.0029 (5) | 0.0063 (5) | −0.0002 (5) |
| C10 | 0.0165 (6) | 0.0197 (7) | 0.0162 (6) | −0.0034 (5) | 0.0074 (5) | −0.0032 (5) |
| C8 | 0.0192 (6) | 0.0167 (7) | 0.0134 (6) | 0.0021 (5) | 0.0060 (5) | 0.0014 (5) |
| C4 | 0.0149 (6) | 0.0279 (7) | 0.0146 (6) | 0.0008 (5) | 0.0052 (5) | 0.0002 (5) |
| C11 | 0.0177 (6) | 0.0158 (7) | 0.0149 (6) | −0.0018 (5) | 0.0075 (5) | −0.0022 (5) |
| C12 | 0.0176 (6) | 0.0202 (7) | 0.0109 (6) | −0.0015 (5) | 0.0060 (5) | −0.0016 (5) |
| C22 | 0.0147 (6) | 0.0170 (7) | 0.0220 (6) | −0.0001 (5) | 0.0055 (5) | 0.0005 (5) |
| C7 | 0.0229 (7) | 0.0170 (7) | 0.0185 (6) | 0.0017 (5) | 0.0072 (5) | −0.0011 (5) |
| C5 | 0.0178 (6) | 0.0329 (8) | 0.0153 (6) | 0.0039 (6) | 0.0063 (5) | 0.0005 (6) |
| C15 | 0.0253 (7) | 0.0239 (8) | 0.0213 (7) | −0.0053 (6) | 0.0097 (6) | −0.0003 (6) |
| C14 | 0.0222 (7) | 0.0464 (10) | 0.0225 (7) | 0.0053 (7) | 0.0112 (6) | −0.0023 (7) |
| C17 | 0.0150 (5) | 0.0182 (7) | 0.0174 (6) | 0.0050 (5) | 0.0045 (5) | 0.0015 (5) |
| C6 | 0.0249 (7) | 0.0269 (8) | 0.0177 (6) | 0.0080 (6) | 0.0086 (5) | −0.0015 (6) |
| C16 | 0.0190 (6) | 0.0200 (7) | 0.0190 (6) | 0.0032 (5) | 0.0053 (5) | 0.0005 (5) |
| C9 | 0.0195 (6) | 0.0209 (7) | 0.0139 (6) | −0.0036 (5) | 0.0075 (5) | −0.0016 (5) |
| C21 | 0.0159 (6) | 0.0215 (7) | 0.0189 (6) | 0.0038 (5) | 0.0075 (5) | 0.0044 (5) |
| C19 | 0.0147 (6) | 0.0164 (7) | 0.0199 (6) | 0.0019 (5) | 0.0058 (5) | 0.0023 (5) |
| C3 | 0.0178 (6) | 0.0346 (8) | 0.0196 (6) | −0.0045 (6) | 0.0082 (5) | 0.0006 (6) |
| C2 | 0.0227 (7) | 0.0279 (8) | 0.0190 (6) | −0.0101 (6) | 0.0075 (5) | −0.0011 (5) |
| C13 | 0.0335 (7) | 0.0225 (8) | 0.0213 (7) | −0.0056 (6) | 0.0094 (6) | −0.0031 (6) |
| O4—C10 | 1.4280 (16) | C11—H11 | 0.980 |
| O4—C11 | 1.4328 (15) | C22—C17 | 1.3936 (19) |
| O1—C12 | 1.4660 (15) | C22—C21 | 1.3937 (19) |
| O1—O2 | 1.4785 (13) | C22—H22 | 0.930 |
| O6—C21 | 1.3644 (16) | C7—C6 | 1.5214 (19) |
| O6—H6 | 0.820 | C7—H7A | 0.970 |
| O5—C10 | 1.4092 (15) | C7—H7B | 0.970 |
| O5—C16 | 1.4423 (16) | C5—C6 | 1.520 (2) |
| O3—C11 | 1.3930 (17) | C5—C14 | 1.5403 (17) |
| O3—C1 | 1.4384 (15) | C5—H5 | 0.980 |
| O7—C19 | 1.3730 (16) | C15—C9 | 1.5266 (19) |
| O7—H7 | 0.820 | C15—H15A | 0.960 |
| O2—C1 | 1.4191 (16) | C15—H15B | 0.960 |
| C18—C19 | 1.3888 (18) | C15—H15C | 0.960 |
| C18—C17 | 1.3936 (19) | C14—H14A | 0.960 |
| C18—H18 | 0.930 | C14—H14B | 0.960 |
| C1—C13 | 1.509 (2) | C14—H14C | 0.960 |
| C1—C2 | 1.5308 (19) | C17—C16 | 1.5052 (18) |
| C20—C21 | 1.3845 (19) | C6—H6A | 0.970 |
| C20—C19 | 1.3874 (18) | C6—H6B | 0.970 |
| C20—H20 | 0.930 | C16—H16A | 0.970 |
| C10—C9 | 1.5190 (18) | C16—H16B | 0.970 |
| C10—H10 | 0.980 | C9—H9 | 0.980 |
| C8—C7 | 1.5344 (18) | C3—C2 | 1.520 (2) |
| C8—C9 | 1.5506 (17) | C3—H3A | 0.970 |
| C8—C12 | 1.5512 (18) | C3—H3B | 0.970 |
| C8—H8 | 0.980 | C2—H2A | 0.970 |
| C4—C3 | 1.535 (2) | C2—H2B | 0.970 |
| C4—C5 | 1.5415 (19) | C13—H13A | 0.960 |
| C4—C12 | 1.5598 (16) | C13—H13B | 0.960 |
| C4—H4 | 0.980 | C13—H13C | 0.960 |
| C11—C12 | 1.5289 (17) | ||
| C10—O4—C11 | 113.64 (9) | C6—C5—H5 | 107.7 |
| C12—O1—O2 | 111.75 (9) | C14—C5—H5 | 107.7 |
| C21—O6—H6 | 109.5 | C4—C5—H5 | 107.7 |
| C10—O5—C16 | 112.09 (10) | C9—C15—H15A | 109.5 |
| C11—O3—C1 | 113.63 (10) | C9—C15—H15B | 109.5 |
| C19—O7—H7 | 109.5 | H15A—C15—H15B | 109.5 |
| C1—O2—O1 | 109.72 (9) | C9—C15—H15C | 109.5 |
| C19—C18—C17 | 118.94 (12) | H15A—C15—H15C | 109.5 |
| C19—C18—H18 | 120.5 | H15B—C15—H15C | 109.5 |
| C17—C18—H18 | 120.5 | C5—C14—H14A | 109.5 |
| O2—C1—O3 | 108.18 (10) | C5—C14—H14B | 109.5 |
| O2—C1—C13 | 105.17 (11) | H14A—C14—H14B | 109.5 |
| O3—C1—C13 | 107.17 (11) | C5—C14—H14C | 109.5 |
| O2—C1—C2 | 112.33 (11) | H14A—C14—H14C | 109.5 |
| O3—C1—C2 | 109.88 (10) | H14B—C14—H14C | 109.5 |
| C13—C1—C2 | 113.79 (11) | C22—C17—C18 | 120.53 (12) |
| C21—C20—C19 | 119.65 (12) | C22—C17—C16 | 120.35 (12) |
| C21—C20—H20 | 120.2 | C18—C17—C16 | 119.12 (12) |
| C19—C20—H20 | 120.2 | C5—C6—C7 | 109.99 (11) |
| O5—C10—O4 | 110.67 (10) | C5—C6—H6A | 109.7 |
| O5—C10—C9 | 111.50 (10) | C7—C6—H6A | 109.7 |
| O4—C10—C9 | 110.18 (10) | C5—C6—H6B | 109.7 |
| O5—C10—H10 | 108.1 | C7—C6—H6B | 109.7 |
| O4—C10—H10 | 108.1 | H6A—C6—H6B | 108.2 |
| C9—C10—H10 | 108.1 | O5—C16—C17 | 108.73 (10) |
| C7—C8—C9 | 113.15 (11) | O5—C16—H16A | 109.9 |
| C7—C8—C12 | 112.23 (10) | C17—C16—H16A | 109.9 |
| C9—C8—C12 | 111.46 (10) | O5—C16—H16B | 109.9 |
| C7—C8—H8 | 106.5 | C17—C16—H16B | 109.9 |
| C9—C8—H8 | 106.5 | H16A—C16—H16B | 108.3 |
| C12—C8—H8 | 106.5 | C10—C9—C15 | 111.45 (11) |
| C3—C4—C5 | 111.25 (11) | C10—C9—C8 | 112.57 (10) |
| C3—C4—C12 | 113.19 (11) | C15—C9—C8 | 113.79 (11) |
| C5—C4—C12 | 112.84 (10) | C10—C9—H9 | 106.1 |
| C3—C4—H4 | 106.3 | C15—C9—H9 | 106.1 |
| C5—C4—H4 | 106.3 | C8—C9—H9 | 106.1 |
| C12—C4—H4 | 106.3 | O6—C21—C20 | 115.57 (12) |
| O3—C11—O4 | 105.56 (10) | O6—C21—C22 | 124.17 (12) |
| O3—C11—C12 | 113.63 (10) | C20—C21—C22 | 120.26 (12) |
| O4—C11—C12 | 111.25 (10) | O7—C19—C20 | 116.06 (11) |
| O3—C11—H11 | 108.8 | O7—C19—C18 | 122.91 (11) |
| O4—C11—H11 | 108.8 | C20—C19—C18 | 121.03 (12) |
| C12—C11—H11 | 108.8 | C2—C3—C4 | 116.22 (11) |
| O1—C12—C11 | 108.60 (10) | C2—C3—H3A | 108.2 |
| O1—C12—C8 | 104.45 (9) | C4—C3—H3A | 108.2 |
| C11—C12—C8 | 110.91 (10) | C2—C3—H3B | 108.2 |
| O1—C12—C4 | 106.09 (10) | C4—C3—H3B | 108.2 |
| C11—C12—C4 | 113.69 (10) | H3A—C3—H3B | 107.4 |
| C8—C12—C4 | 112.48 (11) | C3—C2—C1 | 114.21 (11) |
| C17—C22—C21 | 119.54 (12) | C3—C2—H2A | 108.7 |
| C17—C22—H22 | 120.2 | C1—C2—H2A | 108.7 |
| C21—C22—H22 | 120.2 | C3—C2—H2B | 108.7 |
| C6—C7—C8 | 111.64 (11) | C1—C2—H2B | 108.7 |
| C6—C7—H7A | 109.3 | H2A—C2—H2B | 107.6 |
| C8—C7—H7A | 109.3 | C1—C13—H13A | 109.5 |
| C6—C7—H7B | 109.3 | C1—C13—H13B | 109.5 |
| C8—C7—H7B | 109.3 | H13A—C13—H13B | 109.5 |
| H7A—C7—H7B | 108.0 | C1—C13—H13C | 109.5 |
| C6—C5—C14 | 111.72 (12) | H13A—C13—H13C | 109.5 |
| C6—C5—C4 | 109.92 (11) | H13B—C13—H13C | 109.5 |
| C14—C5—C4 | 112.02 (11) |
| H··· | ||||
| O6—H6···O7i | 0.82 | 1.99 | 2.7279 (14) | 150 |
| O7—H7···O2ii | 0.82 | 2.18 | 2.8409 (13) | 138 |
| O7—H7···O4ii | 0.82 | 2.22 | 2.9269 (13) | 144 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O6—H6⋯O7i | 0.82 | 1.99 | 2.7279 (14) | 150 |
| O7—H7⋯O2ii | 0.82 | 2.18 | 2.8409 (13) | 138 |
| O7—H7⋯O4ii | 0.82 | 2.22 | 2.9269 (13) | 144 |
Symmetry codes: (i) ; (ii) .