Literature DB >> 21581955

Pyridine-2-carbaldehyde thio-semi-carbazone.

Li-Hua Song, Xiang Zhang, Kun Jiang, Sheng-Xiang Yang.   

Abstract

The asymmetric unit of the title compound, C(7)H(8)N(4)S, contains two independent mol-ecules with slightly different conformations; the dihedral angles between the pyridine ring and mean plane of the thio-semicarbazone unit in the two mol-ecules are 2.88 (5) and 6.30 (5)°. Inter-molecular N-H⋯N and N-H⋯S hydrogen bonds link the mol-ecules into layers parallel to the ab plane.

Entities:  

Year:  2009        PMID: 21581955      PMCID: PMC2968221          DOI: 10.1107/S1600536809001962

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of thio­semicarbazones, see: Beraldo & Gambino (2004 ▶). For the crystal structure of a related compound, see: Gu et al. (2008 ▶).

Experimental

Crystal data

C7H8N4S M = 180.23 Orthorhombic, a = 20.725 (2) Å b = 4.7857 (6) Å c = 17.393 (2) Å V = 1725.1 (4) Å3 Z = 8 Mo Kα radiation μ = 0.32 mm−1 T = 298 (2) K 0.45 × 0.20 × 0.19 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.868, T max = 0.941 7296 measured reflections 2797 independent reflections 1951 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.165 S = 0.96 2797 reflections 218 parameters 1 restraint H-atom parameters constrained Δρmax = 0.97 e Å−3 Δρmin = −0.96 e Å−3 Absolute structure: Flack (1983 ▶), 1218 Friedel pairs Flack parameter: 0.02 (19) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809001962/cv2504sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001962/cv2504Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8N4SDx = 1.388 Mg m3
Mr = 180.23Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, Pna21Cell parameters from 1607 reflections
a = 20.725 (2) Åθ = 2.3–21.6°
b = 4.7857 (6) ŵ = 0.32 mm1
c = 17.393 (2) ÅT = 298 K
V = 1725.1 (4) Å3Block, orange
Z = 80.45 × 0.20 × 0.19 mm
F(000) = 752
Bruker SMART CCD area-detector diffractometer2797 independent reflections
Radiation source: fine-focus sealed tube1951 reflections with I > 2σ(I)
graphiteRint = 0.059
φ and ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −24→20
Tmin = 0.868, Tmax = 0.941k = −5→5
7296 measured reflectionsl = −20→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.165w = 1/[σ2(Fo2) + (0.0511P)2 + 6.2026P] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max = 0.001
2797 reflectionsΔρmax = 0.97 e Å3
218 parametersΔρmin = −0.96 e Å3
1 restraintAbsolute structure: Flack (1983), 1218 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.02 (19)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N80.6201 (3)−0.1518 (12)0.5432 (3)0.0387 (14)
N10.5188 (3)0.9637 (13)0.4216 (3)0.0405 (15)
H10.54640.95330.45840.049*
N20.5264 (3)0.8019 (12)0.3566 (3)0.0385 (14)
N30.4295 (3)1.1564 (14)0.3672 (3)0.0514 (18)
H3A0.43761.05910.32670.062*
H3B0.39651.26510.36820.062*
N40.6451 (3)0.3132 (13)0.2989 (3)0.0443 (15)
N50.7451 (3)0.5151 (13)0.4275 (3)0.0411 (14)
H50.72130.48810.38770.049*
N60.7334 (3)0.3664 (12)0.4937 (3)0.0371 (14)
N70.8267 (3)0.7425 (15)0.4879 (4)0.0493 (17)
H7A0.81700.65060.52880.059*
H7B0.85800.86030.48850.059*
S10.45768 (9)1.3182 (4)0.50951 (10)0.0483 (5)
S20.80649 (9)0.8767 (4)0.34251 (11)0.0480 (5)
C10.4677 (3)1.1390 (15)0.4274 (4)0.0352 (16)
C20.5761 (3)0.6438 (14)0.3561 (4)0.0383 (17)
H20.60460.64950.39750.046*
C30.5892 (3)0.4557 (14)0.2926 (4)0.0362 (16)
C40.5478 (3)0.4143 (16)0.2310 (4)0.0438 (18)
H40.50970.51570.22720.053*
C50.5637 (4)0.2228 (17)0.1758 (5)0.054 (2)
H5A0.53670.19440.13380.064*
C60.6199 (4)0.0727 (17)0.1829 (5)0.054 (2)
H60.6310−0.06230.14680.065*
C70.6591 (4)0.1270 (17)0.2447 (4)0.049 (2)
H70.69760.02830.24880.058*
C80.7935 (3)0.7027 (15)0.4244 (4)0.0365 (17)
C90.6886 (3)0.1868 (15)0.4895 (4)0.0383 (18)
H90.66670.16360.44320.046*
C100.6706 (3)0.0160 (14)0.5554 (4)0.0351 (16)
C110.7028 (4)0.0259 (17)0.6248 (4)0.049 (2)
H110.73750.14610.63170.058*
C120.6825 (4)−0.1454 (17)0.6836 (5)0.053 (2)
H120.7030−0.14080.73110.063*
C130.6313 (3)−0.3245 (16)0.6709 (4)0.0471 (19)
H130.6166−0.44380.70930.057*
C140.6029 (3)−0.3205 (17)0.6003 (5)0.047 (2)
H140.5691−0.44450.59140.057*
U11U22U33U12U13U23
N80.044 (3)0.040 (3)0.033 (3)0.004 (3)−0.004 (3)0.003 (3)
N10.044 (3)0.044 (4)0.033 (3)0.003 (3)−0.006 (3)−0.004 (3)
N20.043 (3)0.039 (3)0.034 (4)−0.002 (3)−0.003 (3)−0.001 (3)
N30.049 (4)0.064 (4)0.041 (4)0.013 (3)−0.013 (3)−0.018 (3)
N40.043 (3)0.050 (4)0.040 (4)0.002 (3)−0.005 (3)−0.002 (3)
N50.048 (4)0.047 (4)0.029 (3)0.001 (3)−0.002 (3)−0.003 (3)
N60.042 (3)0.037 (3)0.032 (4)−0.001 (3)−0.003 (2)−0.007 (3)
N70.053 (3)0.057 (4)0.038 (4)0.014 (3)−0.003 (3)−0.013 (3)
S10.0529 (10)0.0535 (11)0.0384 (11)0.0042 (10)−0.0040 (9)−0.0095 (10)
S20.0506 (10)0.0558 (11)0.0377 (10)0.0049 (10)−0.0046 (9)−0.0140 (10)
C10.035 (4)0.034 (4)0.037 (4)−0.006 (3)0.003 (3)0.001 (3)
C20.040 (4)0.040 (4)0.034 (4)0.000 (3)−0.003 (3)0.001 (3)
C30.043 (4)0.033 (4)0.033 (4)0.001 (3)0.003 (3)−0.001 (3)
C40.040 (4)0.050 (5)0.041 (4)0.010 (4)−0.010 (3)−0.003 (4)
C50.058 (5)0.061 (5)0.042 (5)0.000 (5)−0.014 (4)−0.004 (4)
C60.070 (5)0.056 (5)0.038 (5)0.003 (4)0.002 (4)−0.008 (4)
C70.044 (4)0.058 (5)0.044 (5)0.008 (4)0.005 (4)−0.002 (4)
C80.034 (4)0.037 (4)0.038 (4)−0.010 (3)0.000 (3)−0.004 (3)
C90.043 (4)0.039 (4)0.033 (4)0.001 (3)−0.003 (3)−0.002 (3)
C100.039 (4)0.034 (4)0.033 (4)0.000 (3)−0.005 (3)0.001 (3)
C110.050 (4)0.056 (5)0.040 (5)0.008 (4)−0.011 (3)−0.006 (4)
C120.060 (5)0.067 (6)0.031 (4)−0.006 (4)−0.011 (4)−0.006 (4)
C130.048 (4)0.052 (5)0.042 (5)0.001 (4)0.000 (3)−0.013 (4)
C140.041 (4)0.050 (5)0.050 (5)0.003 (4)−0.002 (3)0.003 (4)
N8—C141.328 (9)C2—C31.450 (9)
N8—C101.336 (8)C2—H20.9300
N1—C11.354 (8)C3—C41.388 (9)
N1—N21.380 (8)C4—C51.367 (10)
N1—H10.8600C4—H40.9300
N2—C21.278 (8)C5—C61.373 (10)
N3—C11.316 (9)C5—H5A0.9300
N3—H3A0.8600C6—C71.372 (10)
N3—H3B0.8600C6—H60.9300
N4—C71.330 (9)C7—H70.9300
N4—C31.348 (8)C9—C101.458 (10)
N5—C81.347 (8)C9—H90.9300
N5—N61.375 (8)C10—C111.379 (9)
N5—H50.8600C11—C121.376 (11)
N6—C91.267 (9)C11—H110.9300
N7—C81.314 (9)C12—C131.382 (10)
N7—H7A0.8600C12—H120.9300
N7—H7B0.8600C13—C141.362 (10)
S1—C11.679 (7)C13—H130.9300
S2—C81.671 (8)C14—H140.9300
C14—N8—C10117.2 (6)C4—C5—H5A120.3
C1—N1—N2119.9 (6)C6—C5—H5A120.3
C1—N1—H1120.1C7—C6—C5118.3 (7)
N2—N1—H1120.1C7—C6—H6120.8
C2—N2—N1115.5 (6)C5—C6—H6120.8
C1—N3—H3A120.0N4—C7—C6123.5 (7)
C1—N3—H3B120.0N4—C7—H7118.2
H3A—N3—H3B120.0C6—C7—H7118.2
C7—N4—C3118.0 (6)N7—C8—N5116.9 (7)
C8—N5—N6120.7 (6)N7—C8—S2124.0 (6)
C8—N5—H5119.7N5—C8—S2119.1 (5)
N6—N5—H5119.7N6—C9—C10121.4 (7)
C9—N6—N5115.6 (6)N6—C9—H9119.3
C8—N7—H7A120.0C10—C9—H9119.3
C8—N7—H7B120.0N8—C10—C11122.6 (7)
H7A—N7—H7B120.0N8—C10—C9114.3 (6)
N3—C1—N1116.8 (6)C11—C10—C9123.1 (7)
N3—C1—S1124.8 (6)C12—C11—C10118.8 (7)
N1—C1—S1118.5 (5)C12—C11—H11120.6
N2—C2—C3121.5 (6)C10—C11—H11120.6
N2—C2—H2119.2C11—C12—C13119.0 (7)
C3—C2—H2119.2C11—C12—H12120.5
N4—C3—C4121.4 (6)C13—C12—H12120.5
N4—C3—C2114.4 (6)C14—C13—C12117.8 (8)
C4—C3—C2124.2 (6)C14—C13—H13121.1
C5—C4—C3119.3 (7)C12—C13—H13121.1
C5—C4—H4120.4N8—C14—C13124.5 (8)
C3—C4—H4120.4N8—C14—H14117.8
C4—C5—C6119.5 (7)C13—C14—H14117.8
D—H···AD—HH···AD···AD—H···A
N1—H1···N8i0.862.183.032 (8)169
N3—H3B···S2ii0.862.573.417 (6)168
N7—H7B···S1iii0.862.603.455 (7)172
N5—H5···N40.862.363.199 (8)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N8i0.862.183.032 (8)169
N3—H3B⋯S2ii0.862.573.417 (6)168
N7—H7B⋯S1iii0.862.603.455 (7)172
N5—H5⋯N40.862.363.199 (8)164

Symmetry codes: (i) ; (ii) ; (iii) .

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