| Literature DB >> 21581955 |
Li-Hua Song, Xiang Zhang, Kun Jiang, Sheng-Xiang Yang.
Abstract
The asymmetric unit of the title compound, C(7)H(8)N(4)S, contains two independent mol-ecules with slightly different conformations; the dihedral angles between the pyridine ring and mean plane of the thio-semicarbazone unit in the two mol-ecules are 2.88 (5) and 6.30 (5)°. Inter-molecular N-H⋯N and N-H⋯S hydrogen bonds link the mol-ecules into layers parallel to the ab plane.Entities:
Year: 2009 PMID: 21581955 PMCID: PMC2968221 DOI: 10.1107/S1600536809001962
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H8N4S | |
| Mo | |
| Orthorhombic, | Cell parameters from 1607 reflections |
| θ = 2.3–21.6° | |
| µ = 0.32 mm−1 | |
| Block, orange | |
| 0.45 × 0.20 × 0.19 mm | |
| Bruker SMART CCD area-detector diffractometer | 2797 independent reflections |
| Radiation source: fine-focus sealed tube | 1951 reflections with |
| graphite | |
| φ and ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 7296 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2797 reflections | Δρmax = 0.97 e Å−3 |
| 218 parameters | Δρmin = −0.96 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1218 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.02 (19) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N8 | 0.6201 (3) | −0.1518 (12) | 0.5432 (3) | 0.0387 (14) | |
| N1 | 0.5188 (3) | 0.9637 (13) | 0.4216 (3) | 0.0405 (15) | |
| H1 | 0.5464 | 0.9533 | 0.4584 | 0.049* | |
| N2 | 0.5264 (3) | 0.8019 (12) | 0.3566 (3) | 0.0385 (14) | |
| N3 | 0.4295 (3) | 1.1564 (14) | 0.3672 (3) | 0.0514 (18) | |
| H3A | 0.4376 | 1.0591 | 0.3267 | 0.062* | |
| H3B | 0.3965 | 1.2651 | 0.3682 | 0.062* | |
| N4 | 0.6451 (3) | 0.3132 (13) | 0.2989 (3) | 0.0443 (15) | |
| N5 | 0.7451 (3) | 0.5151 (13) | 0.4275 (3) | 0.0411 (14) | |
| H5 | 0.7213 | 0.4881 | 0.3877 | 0.049* | |
| N6 | 0.7334 (3) | 0.3664 (12) | 0.4937 (3) | 0.0371 (14) | |
| N7 | 0.8267 (3) | 0.7425 (15) | 0.4879 (4) | 0.0493 (17) | |
| H7A | 0.8170 | 0.6506 | 0.5288 | 0.059* | |
| H7B | 0.8580 | 0.8603 | 0.4885 | 0.059* | |
| S1 | 0.45768 (9) | 1.3182 (4) | 0.50951 (10) | 0.0483 (5) | |
| S2 | 0.80649 (9) | 0.8767 (4) | 0.34251 (11) | 0.0480 (5) | |
| C1 | 0.4677 (3) | 1.1390 (15) | 0.4274 (4) | 0.0352 (16) | |
| C2 | 0.5761 (3) | 0.6438 (14) | 0.3561 (4) | 0.0383 (17) | |
| H2 | 0.6046 | 0.6495 | 0.3975 | 0.046* | |
| C3 | 0.5892 (3) | 0.4557 (14) | 0.2926 (4) | 0.0362 (16) | |
| C4 | 0.5478 (3) | 0.4143 (16) | 0.2310 (4) | 0.0438 (18) | |
| H4 | 0.5097 | 0.5157 | 0.2272 | 0.053* | |
| C5 | 0.5637 (4) | 0.2228 (17) | 0.1758 (5) | 0.054 (2) | |
| H5A | 0.5367 | 0.1944 | 0.1338 | 0.064* | |
| C6 | 0.6199 (4) | 0.0727 (17) | 0.1829 (5) | 0.054 (2) | |
| H6 | 0.6310 | −0.0623 | 0.1468 | 0.065* | |
| C7 | 0.6591 (4) | 0.1270 (17) | 0.2447 (4) | 0.049 (2) | |
| H7 | 0.6976 | 0.0283 | 0.2488 | 0.058* | |
| C8 | 0.7935 (3) | 0.7027 (15) | 0.4244 (4) | 0.0365 (17) | |
| C9 | 0.6886 (3) | 0.1868 (15) | 0.4895 (4) | 0.0383 (18) | |
| H9 | 0.6667 | 0.1636 | 0.4432 | 0.046* | |
| C10 | 0.6706 (3) | 0.0160 (14) | 0.5554 (4) | 0.0351 (16) | |
| C11 | 0.7028 (4) | 0.0259 (17) | 0.6248 (4) | 0.049 (2) | |
| H11 | 0.7375 | 0.1461 | 0.6317 | 0.058* | |
| C12 | 0.6825 (4) | −0.1454 (17) | 0.6836 (5) | 0.053 (2) | |
| H12 | 0.7030 | −0.1408 | 0.7311 | 0.063* | |
| C13 | 0.6313 (3) | −0.3245 (16) | 0.6709 (4) | 0.0471 (19) | |
| H13 | 0.6166 | −0.4438 | 0.7093 | 0.057* | |
| C14 | 0.6029 (3) | −0.3205 (17) | 0.6003 (5) | 0.047 (2) | |
| H14 | 0.5691 | −0.4445 | 0.5914 | 0.057* |
| N8 | 0.044 (3) | 0.040 (3) | 0.033 (3) | 0.004 (3) | −0.004 (3) | 0.003 (3) |
| N1 | 0.044 (3) | 0.044 (4) | 0.033 (3) | 0.003 (3) | −0.006 (3) | −0.004 (3) |
| N2 | 0.043 (3) | 0.039 (3) | 0.034 (4) | −0.002 (3) | −0.003 (3) | −0.001 (3) |
| N3 | 0.049 (4) | 0.064 (4) | 0.041 (4) | 0.013 (3) | −0.013 (3) | −0.018 (3) |
| N4 | 0.043 (3) | 0.050 (4) | 0.040 (4) | 0.002 (3) | −0.005 (3) | −0.002 (3) |
| N5 | 0.048 (4) | 0.047 (4) | 0.029 (3) | 0.001 (3) | −0.002 (3) | −0.003 (3) |
| N6 | 0.042 (3) | 0.037 (3) | 0.032 (4) | −0.001 (3) | −0.003 (2) | −0.007 (3) |
| N7 | 0.053 (3) | 0.057 (4) | 0.038 (4) | 0.014 (3) | −0.003 (3) | −0.013 (3) |
| S1 | 0.0529 (10) | 0.0535 (11) | 0.0384 (11) | 0.0042 (10) | −0.0040 (9) | −0.0095 (10) |
| S2 | 0.0506 (10) | 0.0558 (11) | 0.0377 (10) | 0.0049 (10) | −0.0046 (9) | −0.0140 (10) |
| C1 | 0.035 (4) | 0.034 (4) | 0.037 (4) | −0.006 (3) | 0.003 (3) | 0.001 (3) |
| C2 | 0.040 (4) | 0.040 (4) | 0.034 (4) | 0.000 (3) | −0.003 (3) | 0.001 (3) |
| C3 | 0.043 (4) | 0.033 (4) | 0.033 (4) | 0.001 (3) | 0.003 (3) | −0.001 (3) |
| C4 | 0.040 (4) | 0.050 (5) | 0.041 (4) | 0.010 (4) | −0.010 (3) | −0.003 (4) |
| C5 | 0.058 (5) | 0.061 (5) | 0.042 (5) | 0.000 (5) | −0.014 (4) | −0.004 (4) |
| C6 | 0.070 (5) | 0.056 (5) | 0.038 (5) | 0.003 (4) | 0.002 (4) | −0.008 (4) |
| C7 | 0.044 (4) | 0.058 (5) | 0.044 (5) | 0.008 (4) | 0.005 (4) | −0.002 (4) |
| C8 | 0.034 (4) | 0.037 (4) | 0.038 (4) | −0.010 (3) | 0.000 (3) | −0.004 (3) |
| C9 | 0.043 (4) | 0.039 (4) | 0.033 (4) | 0.001 (3) | −0.003 (3) | −0.002 (3) |
| C10 | 0.039 (4) | 0.034 (4) | 0.033 (4) | 0.000 (3) | −0.005 (3) | 0.001 (3) |
| C11 | 0.050 (4) | 0.056 (5) | 0.040 (5) | 0.008 (4) | −0.011 (3) | −0.006 (4) |
| C12 | 0.060 (5) | 0.067 (6) | 0.031 (4) | −0.006 (4) | −0.011 (4) | −0.006 (4) |
| C13 | 0.048 (4) | 0.052 (5) | 0.042 (5) | 0.001 (4) | 0.000 (3) | −0.013 (4) |
| C14 | 0.041 (4) | 0.050 (5) | 0.050 (5) | 0.003 (4) | −0.002 (3) | 0.003 (4) |
| N8—C14 | 1.328 (9) | C2—C3 | 1.450 (9) |
| N8—C10 | 1.336 (8) | C2—H2 | 0.9300 |
| N1—C1 | 1.354 (8) | C3—C4 | 1.388 (9) |
| N1—N2 | 1.380 (8) | C4—C5 | 1.367 (10) |
| N1—H1 | 0.8600 | C4—H4 | 0.9300 |
| N2—C2 | 1.278 (8) | C5—C6 | 1.373 (10) |
| N3—C1 | 1.316 (9) | C5—H5A | 0.9300 |
| N3—H3A | 0.8600 | C6—C7 | 1.372 (10) |
| N3—H3B | 0.8600 | C6—H6 | 0.9300 |
| N4—C7 | 1.330 (9) | C7—H7 | 0.9300 |
| N4—C3 | 1.348 (8) | C9—C10 | 1.458 (10) |
| N5—C8 | 1.347 (8) | C9—H9 | 0.9300 |
| N5—N6 | 1.375 (8) | C10—C11 | 1.379 (9) |
| N5—H5 | 0.8600 | C11—C12 | 1.376 (11) |
| N6—C9 | 1.267 (9) | C11—H11 | 0.9300 |
| N7—C8 | 1.314 (9) | C12—C13 | 1.382 (10) |
| N7—H7A | 0.8600 | C12—H12 | 0.9300 |
| N7—H7B | 0.8600 | C13—C14 | 1.362 (10) |
| S1—C1 | 1.679 (7) | C13—H13 | 0.9300 |
| S2—C8 | 1.671 (8) | C14—H14 | 0.9300 |
| C14—N8—C10 | 117.2 (6) | C4—C5—H5A | 120.3 |
| C1—N1—N2 | 119.9 (6) | C6—C5—H5A | 120.3 |
| C1—N1—H1 | 120.1 | C7—C6—C5 | 118.3 (7) |
| N2—N1—H1 | 120.1 | C7—C6—H6 | 120.8 |
| C2—N2—N1 | 115.5 (6) | C5—C6—H6 | 120.8 |
| C1—N3—H3A | 120.0 | N4—C7—C6 | 123.5 (7) |
| C1—N3—H3B | 120.0 | N4—C7—H7 | 118.2 |
| H3A—N3—H3B | 120.0 | C6—C7—H7 | 118.2 |
| C7—N4—C3 | 118.0 (6) | N7—C8—N5 | 116.9 (7) |
| C8—N5—N6 | 120.7 (6) | N7—C8—S2 | 124.0 (6) |
| C8—N5—H5 | 119.7 | N5—C8—S2 | 119.1 (5) |
| N6—N5—H5 | 119.7 | N6—C9—C10 | 121.4 (7) |
| C9—N6—N5 | 115.6 (6) | N6—C9—H9 | 119.3 |
| C8—N7—H7A | 120.0 | C10—C9—H9 | 119.3 |
| C8—N7—H7B | 120.0 | N8—C10—C11 | 122.6 (7) |
| H7A—N7—H7B | 120.0 | N8—C10—C9 | 114.3 (6) |
| N3—C1—N1 | 116.8 (6) | C11—C10—C9 | 123.1 (7) |
| N3—C1—S1 | 124.8 (6) | C12—C11—C10 | 118.8 (7) |
| N1—C1—S1 | 118.5 (5) | C12—C11—H11 | 120.6 |
| N2—C2—C3 | 121.5 (6) | C10—C11—H11 | 120.6 |
| N2—C2—H2 | 119.2 | C11—C12—C13 | 119.0 (7) |
| C3—C2—H2 | 119.2 | C11—C12—H12 | 120.5 |
| N4—C3—C4 | 121.4 (6) | C13—C12—H12 | 120.5 |
| N4—C3—C2 | 114.4 (6) | C14—C13—C12 | 117.8 (8) |
| C4—C3—C2 | 124.2 (6) | C14—C13—H13 | 121.1 |
| C5—C4—C3 | 119.3 (7) | C12—C13—H13 | 121.1 |
| C5—C4—H4 | 120.4 | N8—C14—C13 | 124.5 (8) |
| C3—C4—H4 | 120.4 | N8—C14—H14 | 117.8 |
| C4—C5—C6 | 119.5 (7) | C13—C14—H14 | 117.8 |
| H··· | ||||
| N1—H1···N8i | 0.86 | 2.18 | 3.032 (8) | 169 |
| N3—H3B···S2ii | 0.86 | 2.57 | 3.417 (6) | 168 |
| N7—H7B···S1iii | 0.86 | 2.60 | 3.455 (7) | 172 |
| N5—H5···N4 | 0.86 | 2.36 | 3.199 (8) | 164 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N8i | 0.86 | 2.18 | 3.032 (8) | 169 |
| N3—H3 | 0.86 | 2.57 | 3.417 (6) | 168 |
| N7—H7 | 0.86 | 2.60 | 3.455 (7) | 172 |
| N5—H5⋯N4 | 0.86 | 2.36 | 3.199 (8) | 164 |
Symmetry codes: (i) ; (ii) ; (iii) .