Literature DB >> 21203291

Benzaldehyde thio-semicarbazone monohydrate.

Sheng-Jiu Gu1, Kai-Mei Zhu.   

Abstract

In the title compound, C(8)H(9)N(3)S·H(2)O, intra-molecular N-H⋯N hydrogen bonding contributes to the mol-ecular conformation. Water mol-ecules are involved in inter-molecular N-H⋯O and O-H⋯S hydrogen bonds, which link the mol-ecules into ribbons extended along the a axis. Weak inter-molecular N-H⋯S hydrogen bonds link these ribbons into layers parallel to the ab plane with the phenyl rings pointing up and down.

Entities:  

Year:  2008        PMID: 21203291      PMCID: PMC2962080          DOI: 10.1107/S1600536808022769

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see Beraldo et al. (2004 ▶); Bondock et al. (2007 ▶); Jing et al. (2006 ▶).

Experimental

Crystal data

C8H9N3S·H2O M = 197.26 Orthorhombic, a = 6.1685 (10) Å b = 7.6733 (12) Å c = 21.131 (2) Å V = 1000.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 298 (2) K 0.49 × 0.30 × 0.28 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.871, T max = 0.923 4749 measured reflections 1764 independent reflections 1438 reflections with I > 2σ(I) R int = 0.065

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.105 S = 1.07 1764 reflections 118 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Absolute structure: Flack (1983 ▶), 689 Friedel pairs Flack parameter: −0.05 (13) Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808022769/cv2428sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808022769/cv2428Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N3S·H2ODx = 1.310 Mg m3
Mr = 197.26Mo Kα radiation λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 1572 reflections
a = 6.1685 (10) Åθ = 2.8–22.5º
b = 7.6733 (12) ŵ = 0.29 mm1
c = 21.131 (2) ÅT = 298 (2) K
V = 1000.2 (2) Å3Block, orange
Z = 40.49 × 0.30 × 0.28 mm
F000 = 416
Bruker SMART CCD area-detector diffractometer1764 independent reflections
Radiation source: fine-focus sealed tube1438 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.065
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.9º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.871, Tmax = 0.924k = −9→6
4749 measured reflectionsl = −25→24
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.045  w = 1/[σ2(Fo2) + (0.0438P)2 + 0.0825P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.105(Δ/σ)max < 0.001
S = 1.08Δρmax = 0.25 e Å3
1764 reflectionsΔρmin = −0.17 e Å3
118 parametersExtinction correction: none
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 689 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: −0.05 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.5077 (4)0.4006 (3)0.35842 (11)0.0430 (6)
N20.4610 (4)0.4442 (3)0.42017 (10)0.0402 (6)
H20.54730.51070.44120.048*
N30.1572 (5)0.2820 (4)0.41293 (12)0.0616 (9)
H3A0.19230.25760.37460.074*
H3B0.04000.24010.42890.074*
O10.2807 (3)0.8582 (3)0.51847 (12)0.0681 (7)
H1A0.28740.74830.51380.082*
H1B0.40260.90300.50910.082*
S10.22368 (12)0.43397 (10)0.52322 (3)0.0473 (3)
C10.2821 (5)0.3831 (3)0.44708 (14)0.0398 (7)
C20.6891 (5)0.4535 (4)0.33743 (13)0.0436 (7)
H2A0.78400.51120.36450.052*
C30.7511 (4)0.4251 (4)0.27170 (12)0.0412 (7)
C40.6111 (6)0.3517 (4)0.22810 (15)0.0534 (9)
H40.47450.31460.24090.064*
C50.6728 (7)0.3333 (5)0.16566 (16)0.0640 (11)
H50.57660.28700.13620.077*
C60.8751 (7)0.3834 (5)0.14733 (17)0.0636 (11)
H60.91800.36710.10560.076*
C71.0158 (6)0.4572 (5)0.18932 (16)0.0630 (10)
H71.15230.49400.17620.076*
C80.9527 (5)0.4761 (4)0.25132 (15)0.0536 (9)
H81.04900.52480.28020.064*
U11U22U33U12U13U23
N10.0480 (15)0.0477 (15)0.0332 (13)0.0000 (13)0.0012 (12)−0.0020 (11)
N20.0443 (14)0.0422 (14)0.0342 (12)−0.0074 (14)−0.0004 (11)−0.0034 (12)
N30.061 (2)0.079 (2)0.0456 (17)−0.0290 (17)0.0118 (14)−0.0121 (15)
O10.0524 (15)0.0609 (13)0.0910 (19)0.0017 (12)0.0204 (15)−0.0130 (13)
S10.0467 (5)0.0576 (5)0.0376 (4)0.0009 (4)0.0015 (4)−0.0018 (4)
C10.0402 (17)0.0381 (16)0.0411 (16)0.0008 (15)−0.0035 (15)0.0036 (12)
C20.0415 (17)0.0469 (17)0.0422 (16)0.0035 (17)−0.0009 (14)−0.0018 (14)
C30.0421 (17)0.0433 (14)0.0383 (15)0.0013 (18)0.0036 (14)0.0015 (14)
C40.056 (2)0.061 (2)0.0429 (19)−0.0134 (17)0.0061 (17)−0.0012 (17)
C50.083 (3)0.065 (2)0.044 (2)−0.013 (2)0.0033 (19)−0.0067 (18)
C60.086 (3)0.061 (2)0.043 (2)0.005 (2)0.017 (2)0.0038 (18)
C70.053 (2)0.080 (3)0.057 (2)−0.002 (2)0.0154 (18)0.010 (2)
C80.050 (2)0.066 (2)0.0446 (17)−0.0061 (17)0.0023 (16)0.0054 (16)
N1—C21.270 (3)C3—C81.373 (4)
N1—N21.378 (3)C3—C41.382 (4)
N2—C11.327 (3)C4—C51.380 (4)
N2—H20.8600C4—H40.9300
N3—C11.310 (4)C5—C61.362 (5)
N3—H3A0.8600C5—H50.9300
N3—H3B0.8600C6—C71.364 (5)
O1—H1A0.8499C6—H60.9300
O1—H1B0.8499C7—C81.375 (5)
S1—C11.695 (3)C7—H70.9300
C2—C31.457 (4)C8—H80.9300
C2—H2A0.9300
C2—N1—N2115.9 (3)C4—C3—C2122.2 (3)
C1—N2—N1119.6 (2)C5—C4—C3120.4 (3)
C1—N2—H2120.2C5—C4—H4119.8
N1—N2—H2120.2C3—C4—H4119.8
C1—N3—H3A120.0C6—C5—C4119.7 (4)
C1—N3—H3B120.0C6—C5—H5120.2
H3A—N3—H3B120.0C4—C5—H5120.2
H1A—O1—H1B109.4C5—C6—C7121.0 (3)
N3—C1—N2117.6 (3)C5—C6—H6119.5
N3—C1—S1122.3 (2)C7—C6—H6119.5
N2—C1—S1120.1 (2)C6—C7—C8118.9 (3)
N1—C2—C3121.1 (3)C6—C7—H7120.5
N1—C2—H2A119.5C8—C7—H7120.5
C3—C2—H2A119.5C3—C8—C7121.7 (3)
C8—C3—C4118.2 (3)C3—C8—H8119.2
C8—C3—C2119.6 (3)C7—C8—H8119.2
D—H···AD—HH···AD···AD—H···A
N3—H3A···N10.862.262.613 (4)105
N2—H2···O1i0.861.952.805 (3)171
N3—H3B···S1ii0.862.573.423 (3)170
O1—H1A···S10.852.453.276 (2)164
O1—H1B···S1i0.852.443.284 (2)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N10.862.262.613 (4)105
N2—H2⋯O1i0.861.952.805 (3)171
N3—H3B⋯S1ii0.862.573.423 (3)170
O1—H1A⋯S10.852.453.276 (2)164
O1—H1B⋯S1i0.852.443.284 (2)172

Symmetry codes: (i) ; (ii) .

  3 in total

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