| Literature DB >> 21203291 |
Abstract
In the title compound, C(8)H(9)N(3)S·H(2)O, intra-molecular N-H⋯N hydrogen bonding contributes to the mol-ecular conformation. Water mol-ecules are involved in inter-molecular N-H⋯O and O-H⋯S hydrogen bonds, which link the mol-ecules into ribbons extended along the a axis. Weak inter-molecular N-H⋯S hydrogen bonds link these ribbons into layers parallel to the ab plane with the phenyl rings pointing up and down.Entities:
Year: 2008 PMID: 21203291 PMCID: PMC2962080 DOI: 10.1107/S1600536808022769
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H9N3S·H2O | |
| Mo | |
| Orthorhombic, | Cell parameters from 1572 reflections |
| θ = 2.8–22.5º | |
| µ = 0.29 mm−1 | |
| Block, orange | |
| 0.49 × 0.30 × 0.28 mm | |
| Bruker SMART CCD area-detector diffractometer | 1764 independent reflections |
| Radiation source: fine-focus sealed tube | 1438 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 1.9º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 4749 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| | |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 1764 reflections | Δρmin = −0.17 e Å−3 |
| 118 parameters | Extinction correction: none |
| Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 689 Friedel pairs |
| Secondary atom site location: difference Fourier map | Flack parameter: −0.05 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.5077 (4) | 0.4006 (3) | 0.35842 (11) | 0.0430 (6) | |
| N2 | 0.4610 (4) | 0.4442 (3) | 0.42017 (10) | 0.0402 (6) | |
| H2 | 0.5473 | 0.5107 | 0.4412 | 0.048* | |
| N3 | 0.1572 (5) | 0.2820 (4) | 0.41293 (12) | 0.0616 (9) | |
| H3A | 0.1923 | 0.2576 | 0.3746 | 0.074* | |
| H3B | 0.0400 | 0.2401 | 0.4289 | 0.074* | |
| O1 | 0.2807 (3) | 0.8582 (3) | 0.51847 (12) | 0.0681 (7) | |
| H1A | 0.2874 | 0.7483 | 0.5138 | 0.082* | |
| H1B | 0.4026 | 0.9030 | 0.5091 | 0.082* | |
| S1 | 0.22368 (12) | 0.43397 (10) | 0.52322 (3) | 0.0473 (3) | |
| C1 | 0.2821 (5) | 0.3831 (3) | 0.44708 (14) | 0.0398 (7) | |
| C2 | 0.6891 (5) | 0.4535 (4) | 0.33743 (13) | 0.0436 (7) | |
| H2A | 0.7840 | 0.5112 | 0.3645 | 0.052* | |
| C3 | 0.7511 (4) | 0.4251 (4) | 0.27170 (12) | 0.0412 (7) | |
| C4 | 0.6111 (6) | 0.3517 (4) | 0.22810 (15) | 0.0534 (9) | |
| H4 | 0.4745 | 0.3146 | 0.2409 | 0.064* | |
| C5 | 0.6728 (7) | 0.3333 (5) | 0.16566 (16) | 0.0640 (11) | |
| H5 | 0.5766 | 0.2870 | 0.1362 | 0.077* | |
| C6 | 0.8751 (7) | 0.3834 (5) | 0.14733 (17) | 0.0636 (11) | |
| H6 | 0.9180 | 0.3671 | 0.1056 | 0.076* | |
| C7 | 1.0158 (6) | 0.4572 (5) | 0.18932 (16) | 0.0630 (10) | |
| H7 | 1.1523 | 0.4940 | 0.1762 | 0.076* | |
| C8 | 0.9527 (5) | 0.4761 (4) | 0.25132 (15) | 0.0536 (9) | |
| H8 | 1.0490 | 0.5248 | 0.2802 | 0.064* |
| N1 | 0.0480 (15) | 0.0477 (15) | 0.0332 (13) | 0.0000 (13) | 0.0012 (12) | −0.0020 (11) |
| N2 | 0.0443 (14) | 0.0422 (14) | 0.0342 (12) | −0.0074 (14) | −0.0004 (11) | −0.0034 (12) |
| N3 | 0.061 (2) | 0.079 (2) | 0.0456 (17) | −0.0290 (17) | 0.0118 (14) | −0.0121 (15) |
| O1 | 0.0524 (15) | 0.0609 (13) | 0.0910 (19) | 0.0017 (12) | 0.0204 (15) | −0.0130 (13) |
| S1 | 0.0467 (5) | 0.0576 (5) | 0.0376 (4) | 0.0009 (4) | 0.0015 (4) | −0.0018 (4) |
| C1 | 0.0402 (17) | 0.0381 (16) | 0.0411 (16) | 0.0008 (15) | −0.0035 (15) | 0.0036 (12) |
| C2 | 0.0415 (17) | 0.0469 (17) | 0.0422 (16) | 0.0035 (17) | −0.0009 (14) | −0.0018 (14) |
| C3 | 0.0421 (17) | 0.0433 (14) | 0.0383 (15) | 0.0013 (18) | 0.0036 (14) | 0.0015 (14) |
| C4 | 0.056 (2) | 0.061 (2) | 0.0429 (19) | −0.0134 (17) | 0.0061 (17) | −0.0012 (17) |
| C5 | 0.083 (3) | 0.065 (2) | 0.044 (2) | −0.013 (2) | 0.0033 (19) | −0.0067 (18) |
| C6 | 0.086 (3) | 0.061 (2) | 0.043 (2) | 0.005 (2) | 0.017 (2) | 0.0038 (18) |
| C7 | 0.053 (2) | 0.080 (3) | 0.057 (2) | −0.002 (2) | 0.0154 (18) | 0.010 (2) |
| C8 | 0.050 (2) | 0.066 (2) | 0.0446 (17) | −0.0061 (17) | 0.0023 (16) | 0.0054 (16) |
| N1—C2 | 1.270 (3) | C3—C8 | 1.373 (4) |
| N1—N2 | 1.378 (3) | C3—C4 | 1.382 (4) |
| N2—C1 | 1.327 (3) | C4—C5 | 1.380 (4) |
| N2—H2 | 0.8600 | C4—H4 | 0.9300 |
| N3—C1 | 1.310 (4) | C5—C6 | 1.362 (5) |
| N3—H3A | 0.8600 | C5—H5 | 0.9300 |
| N3—H3B | 0.8600 | C6—C7 | 1.364 (5) |
| O1—H1A | 0.8499 | C6—H6 | 0.9300 |
| O1—H1B | 0.8499 | C7—C8 | 1.375 (5) |
| S1—C1 | 1.695 (3) | C7—H7 | 0.9300 |
| C2—C3 | 1.457 (4) | C8—H8 | 0.9300 |
| C2—H2A | 0.9300 | ||
| C2—N1—N2 | 115.9 (3) | C4—C3—C2 | 122.2 (3) |
| C1—N2—N1 | 119.6 (2) | C5—C4—C3 | 120.4 (3) |
| C1—N2—H2 | 120.2 | C5—C4—H4 | 119.8 |
| N1—N2—H2 | 120.2 | C3—C4—H4 | 119.8 |
| C1—N3—H3A | 120.0 | C6—C5—C4 | 119.7 (4) |
| C1—N3—H3B | 120.0 | C6—C5—H5 | 120.2 |
| H3A—N3—H3B | 120.0 | C4—C5—H5 | 120.2 |
| H1A—O1—H1B | 109.4 | C5—C6—C7 | 121.0 (3) |
| N3—C1—N2 | 117.6 (3) | C5—C6—H6 | 119.5 |
| N3—C1—S1 | 122.3 (2) | C7—C6—H6 | 119.5 |
| N2—C1—S1 | 120.1 (2) | C6—C7—C8 | 118.9 (3) |
| N1—C2—C3 | 121.1 (3) | C6—C7—H7 | 120.5 |
| N1—C2—H2A | 119.5 | C8—C7—H7 | 120.5 |
| C3—C2—H2A | 119.5 | C3—C8—C7 | 121.7 (3) |
| C8—C3—C4 | 118.2 (3) | C3—C8—H8 | 119.2 |
| C8—C3—C2 | 119.6 (3) | C7—C8—H8 | 119.2 |
| H··· | ||||
| N3—H3A···N1 | 0.86 | 2.26 | 2.613 (4) | 105 |
| N2—H2···O1i | 0.86 | 1.95 | 2.805 (3) | 171 |
| N3—H3B···S1ii | 0.86 | 2.57 | 3.423 (3) | 170 |
| O1—H1A···S1 | 0.85 | 2.45 | 3.276 (2) | 164 |
| O1—H1B···S1i | 0.85 | 2.44 | 3.284 (2) | 172 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3 | 0.86 | 2.26 | 2.613 (4) | 105 |
| N2—H2⋯O1i | 0.86 | 1.95 | 2.805 (3) | 171 |
| N3—H3 | 0.86 | 2.57 | 3.423 (3) | 170 |
| O1—H1 | 0.85 | 2.45 | 3.276 (2) | 164 |
| O1—H1 | 0.85 | 2.44 | 3.284 (2) | 172 |
Symmetry codes: (i) ; (ii) .