Literature DB >> 21581940

2-(3-Chloro-phen-yl)-4,5-dihydro-1H-imidazole.

Reza Kia, Hoong-Kun Fun, Hadi Kargar.   

Abstract

In the title compound, C(9)H(9)ClN(2), a substituted imidazoline, the six- and five-membered rings are twisted from each other, making a dihedral angle of 17.07 (5)°. In the crystal structure, a short Cl⋯Cl [3.3540 (3) Å] inter-action is observed. Neighbouring mol-ecules are linked together by inter-molecular N-H⋯N hydrogen bonds into a one-dimensional infinite chain along the [101] direction and short Cl⋯Cl contacts link the chains into a three-dimensional network. There is also a significant π-stacking inter-action between the planar sections of the six- and five-membered rings.

Entities:  

Year:  2009        PMID: 21581940      PMCID: PMC2968295          DOI: 10.1107/S1600536809001214

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For a related structure and the synthesis, see: Stibrany et al. (2004 ▶); Kia et al. (2008 ▶). For the biological and pharmacological activities of imidazoline derivatives, see, for example: Blancafort (1978 ▶); Chan (1993 ▶); Vizi (1986 ▶); Li et al. (1996 ▶); Ueno et al. (1995 ▶); Corey & Grogan (1999 ▶).

Experimental

Crystal data

C9H9ClN2 M = 180.63 Orthorhombic, a = 19.7329 (8) Å b = 39.1479 (18) Å c = 4.3493 (2) Å V = 3359.8 (3) Å3 Z = 16 Mo Kα radiation μ = 0.39 mm−1 T = 100.0 (1) K 0.51 × 0.50 × 0.09 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.825, T max = 0.964 14166 measured reflections 3438 independent reflections 3224 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.072 S = 1.10 3438 reflections 113 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.15 e Å−3 Absolute structure: Flack (1983 ▶), 1429 Friedel pairs Flack parameter: −0.05 (4) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001214/is2379sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001214/is2379Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H9ClN2F(000) = 1504
Mr = 180.63Dx = 1.428 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 8962 reflections
a = 19.7329 (8) Åθ = 2.9–36.7°
b = 39.1479 (18) ŵ = 0.39 mm1
c = 4.3493 (2) ÅT = 100 K
V = 3359.8 (3) Å3Block, colourless
Z = 160.51 × 0.50 × 0.09 mm
Bruker APEXII CCD area-detector diffractometer3438 independent reflections
Radiation source: fine-focus sealed tube3224 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 35.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −31→25
Tmin = 0.825, Tmax = 0.964k = −60→60
14166 measured reflectionsl = −6→6
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.037P)2 + 1.1492P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max = 0.001
3438 reflectionsΔρmax = 0.33 e Å3
113 parametersΔρmin = −0.15 e Å3
1 restraintAbsolute structure: Flack (1983), 1429 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.05 (4)
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.165233 (12)0.246951 (6)0.02330 (7)0.02846 (7)
N10.00209 (4)0.10678 (2)0.1715 (2)0.01782 (15)
N20.11053 (4)0.11676 (2)0.3205 (2)0.01792 (15)
C10.10570 (4)0.18532 (2)0.0803 (2)0.01732 (16)
H1A0.14050.18030.21720.021*
C20.10314 (4)0.21685 (2)−0.0634 (2)0.01837 (17)
C30.05234 (5)0.22529 (2)−0.2708 (2)0.01901 (17)
H3A0.05170.2465−0.36670.023*
C40.00232 (5)0.20104 (3)−0.3313 (3)0.01959 (17)
H4A−0.03230.2062−0.46860.024*
C50.00358 (5)0.16926 (2)−0.1890 (2)0.01739 (16)
H5A−0.03010.1533−0.23130.021*
C60.05544 (4)0.16118 (2)0.0174 (2)0.01498 (14)
C70.05755 (4)0.12791 (2)0.1766 (2)0.01505 (15)
C80.01553 (5)0.07848 (3)0.3841 (3)0.02052 (18)
H8A0.00530.05660.29070.025*
H8B−0.01020.08090.57280.025*
C90.09225 (5)0.08268 (3)0.4421 (3)0.02013 (18)
H9A0.10210.08130.66020.024*
H9B0.11750.06500.33640.024*
H1N1−0.0392 (8)0.1159 (4)0.148 (4)0.036 (4)*
U11U22U33U12U13U23
Cl10.01974 (10)0.01899 (11)0.04665 (16)−0.00554 (8)−0.00483 (11)0.00392 (11)
N10.0124 (3)0.0167 (4)0.0244 (4)−0.0016 (3)−0.0022 (3)0.0014 (3)
N20.0132 (3)0.0161 (3)0.0245 (4)0.0007 (3)−0.0013 (3)0.0019 (3)
C10.0122 (3)0.0165 (4)0.0232 (4)0.0008 (3)−0.0002 (3)−0.0003 (3)
C20.0139 (3)0.0166 (4)0.0246 (4)−0.0010 (3)0.0019 (3)−0.0004 (3)
C30.0189 (4)0.0171 (4)0.0210 (4)0.0013 (3)0.0025 (3)0.0013 (3)
C40.0180 (4)0.0211 (4)0.0196 (4)0.0016 (3)−0.0018 (3)0.0000 (3)
C50.0148 (3)0.0192 (4)0.0181 (4)0.0000 (3)−0.0006 (3)−0.0007 (3)
C60.0120 (3)0.0149 (4)0.0180 (4)0.0012 (3)0.0018 (3)−0.0014 (3)
C70.0117 (3)0.0158 (4)0.0177 (4)−0.0003 (3)0.0011 (3)−0.0016 (3)
C80.0164 (4)0.0188 (4)0.0264 (4)−0.0021 (3)−0.0011 (3)0.0042 (3)
C90.0159 (4)0.0184 (4)0.0260 (5)0.0002 (3)−0.0008 (3)0.0039 (3)
Cl1—C21.7413 (10)C3—H3A0.9300
N1—C71.3719 (12)C4—C51.3897 (14)
N1—C81.4675 (13)C4—H4A0.9300
N1—H1N10.896 (16)C5—C61.3976 (13)
N2—C71.2942 (12)C5—H5A0.9300
N2—C91.4799 (13)C6—C71.4759 (13)
C1—C21.3844 (14)C8—C91.5436 (13)
C1—C61.3969 (12)C8—H8A0.9700
C1—H1A0.9300C8—H8B0.9700
C2—C31.3884 (14)C9—H9A0.9700
C3—C41.3944 (14)C9—H9B0.9700
Cl1···Cl1i3.3540 (3)C4···C6iii3.3997 (15)
C1···C3ii3.3945 (12)C5···C7iii3.3716 (12)
C1···C4ii3.3301 (15)
C7—N1—C8107.50 (7)C1—C6—C5119.51 (8)
C7—N1—H1N1119.1 (10)C1—C6—C7119.03 (8)
C8—N1—H1N1122.5 (11)C5—C6—C7121.45 (8)
C7—N2—C9106.25 (7)N2—C7—N1116.68 (8)
C2—C1—C6119.26 (9)N2—C7—C6123.17 (8)
C2—C1—H1A120.4N1—C7—C6120.13 (8)
C6—C1—H1A120.4N1—C8—C9101.53 (7)
C1—C2—C3122.13 (9)N1—C8—H8A111.5
C1—C2—Cl1118.68 (7)C9—C8—H8A111.5
C3—C2—Cl1119.19 (8)N1—C8—H8B111.5
C2—C3—C4118.15 (9)C9—C8—H8B111.5
C2—C3—H3A120.9H8A—C8—H8B109.3
C4—C3—H3A120.9N2—C9—C8106.06 (8)
C5—C4—C3120.84 (9)N2—C9—H9A110.5
C5—C4—H4A119.6C8—C9—H9A110.5
C3—C4—H4A119.6N2—C9—H9B110.5
C4—C5—C6120.12 (8)C8—C9—H9B110.5
C4—C5—H5A119.9H9A—C9—H9B108.7
C6—C5—H5A119.9
C6—C1—C2—C3−0.48 (14)C9—N2—C7—C6−179.11 (8)
C6—C1—C2—Cl1178.76 (7)C8—N1—C7—N29.55 (12)
C1—C2—C3—C40.66 (14)C8—N1—C7—C6−171.73 (8)
Cl1—C2—C3—C4−178.58 (8)C1—C6—C7—N2−15.38 (13)
C2—C3—C4—C5−0.37 (15)C5—C6—C7—N2166.02 (9)
C3—C4—C5—C6−0.09 (15)C1—C6—C7—N1165.98 (9)
C2—C1—C6—C50.00 (13)C5—C6—C7—N1−12.62 (13)
C2—C1—C6—C7−178.62 (8)C7—N1—C8—C9−13.33 (10)
C4—C5—C6—C10.28 (14)C7—N2—C9—C8−8.35 (11)
C4—C5—C6—C7178.87 (9)N1—C8—C9—N213.08 (10)
C9—N2—C7—N1−0.43 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1N1···N2iv0.896 (16)2.118 (16)3.0113 (11)174.5 (15)
Table 1

Selected interatomic distances (Å)

Cl1⋯Cl1i3.3540 (3)
C1⋯C3ii3.3945 (12)
C1⋯C4ii3.3301 (15)
C4⋯C6iii3.3997 (15)
C5⋯C7iii3.3716 (12)

Symmetry codes: (i) ; (ii) ; (iii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N1⋯N2iv0.896 (16)2.118 (16)3.0113 (11)174.5 (15)

Symmetry code: (iv) .

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