Literature DB >> 21581672

N'-(2-Hydr-oxy-3-methoxy-benzyl-idene)-1,3-benzodioxole-5-carbohydrazide monohydrate.

Chun-Lin Du1.   

Abstract

Single crystals of the title compound, C(16)H(14)N(2)O(5)·H(2)O, were obtained from a condensation reaction of 1,3-benzodioxole-5-carbohydrazide and 3-methoxy-salicylaldehyde in a 95% ethanol solution. The asymmetric unit consists of a Schiff base mol-ecule, which assumes an E configuration with respect to the C=N bond, and a water mol-ecule of crystallization. The dihedral angle between the two substituted benzene rings is 12.7 (2)°. In the crystal structure, mol-ecules are linked through inter-molecular N-H⋯O and O-H⋯O hydrogen bonds, forming layers parallel to the bc plane.

Entities:  

Year:  2008        PMID: 21581672      PMCID: PMC2967948          DOI: 10.1107/S1600536808040117

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of hydrazones, see: Bedia et al. (2006 ▶); Rollas et al. (2002 ▶); Okabe et al. (1993 ▶). For bond-length data, see: Allen et al. (1987 ▶). For related structures, see: Fun et al. (2008 ▶); Qu et al. (2008 ▶); Shan et al. (2008 ▶); Yehye et al. (2008 ▶).

Experimental

Crystal data

C16H14N2O5·H2O M = 332.31 Orthorhombic, a = 4.792 (2) Å b = 12.916 (3) Å c = 24.002 (6) Å V = 1485.6 (7) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 (2) K 0.23 × 0.20 × 0.20 mm

Data collection

Bruker SMART 1K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.974, T max = 0.977 8595 measured reflections 1907 independent reflections 1639 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.076 S = 1.05 1907 reflections 228 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.13 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808040117/sj2559sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808040117/sj2559Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14N2O5·H2OF(000) = 696
Mr = 332.31Dx = 1.486 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 3222 reflections
a = 4.792 (2) Åθ = 2.4–25.6°
b = 12.916 (3) ŵ = 0.12 mm1
c = 24.002 (6) ÅT = 298 K
V = 1485.6 (7) Å3Cut from needle, colorless
Z = 40.23 × 0.20 × 0.20 mm
Bruker SMART 1K CCD area-detector diffractometer1907 independent reflections
Radiation source: fine-focus sealed tube1639 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scansθmax = 27.0°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→6
Tmin = 0.974, Tmax = 0.977k = −16→13
8595 measured reflectionsl = −30→28
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.076H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0385P)2 + 0.1335P] where P = (Fo2 + 2Fc2)/3
1907 reflections(Δ/σ)max < 0.001
228 parametersΔρmax = 0.13 e Å3
4 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9802 (3)0.80320 (10)0.83305 (6)0.0447 (4)
H10.87750.81210.80610.067*
O20.3794 (4)0.78499 (11)0.69933 (6)0.0563 (5)
O31.3470 (3)0.79317 (11)0.91162 (6)0.0489 (4)
O4−0.3191 (4)0.81446 (12)0.53841 (6)0.0599 (5)
O5−0.3991 (3)0.98897 (11)0.52200 (6)0.0490 (4)
O60.4857 (4)0.67908 (12)0.79533 (6)0.0528 (4)
N10.7019 (4)0.92306 (13)0.75678 (6)0.0368 (4)
N20.5153 (4)0.95059 (13)0.71517 (7)0.0374 (4)
C11.0510 (4)0.98797 (15)0.82015 (7)0.0349 (4)
C21.1069 (4)0.89400 (14)0.84647 (8)0.0330 (4)
C31.3082 (4)0.88967 (15)0.88912 (8)0.0360 (4)
C41.4481 (5)0.97831 (16)0.90522 (8)0.0415 (5)
H41.57890.97540.93380.050*
C51.3937 (5)1.07197 (16)0.87871 (8)0.0449 (5)
H51.48971.13140.88930.054*
C61.1978 (5)1.07680 (15)0.83680 (8)0.0418 (5)
H61.16241.13970.81930.050*
C70.8453 (5)0.99888 (16)0.77596 (8)0.0388 (5)
H70.81631.06430.76080.047*
C80.3608 (5)0.87806 (15)0.68878 (7)0.0371 (5)
C90.1638 (5)0.91647 (14)0.64528 (7)0.0330 (4)
C100.0244 (5)0.84061 (15)0.61392 (8)0.0383 (5)
H100.05590.77050.62000.046*
C11−0.1597 (5)0.87353 (15)0.57404 (8)0.0385 (5)
C12−0.2088 (5)0.97742 (15)0.56457 (7)0.0359 (4)
C13−0.0799 (5)1.05292 (15)0.59480 (8)0.0412 (5)
H13−0.11621.12270.58850.049*
C140.1088 (5)1.02087 (15)0.63555 (8)0.0386 (5)
H140.20041.07050.65680.046*
C15−0.4686 (6)0.88603 (18)0.50433 (8)0.0497 (6)
H15A−0.66780.87460.50800.060*
H15B−0.41790.87650.46550.060*
C161.5697 (5)0.78022 (19)0.95022 (9)0.0522 (6)
H16A1.53650.82260.98240.078*
H16B1.74210.80050.93300.078*
H16C1.58060.70890.96130.078*
H20.499 (7)1.0186 (9)0.7078 (10)0.080*
H6A0.474 (6)0.7133 (18)0.7649 (6)0.080*
H6B0.366 (5)0.706 (2)0.8170 (8)0.080*
U11U22U33U12U13U23
O10.0460 (9)0.0381 (8)0.0500 (9)−0.0062 (7)−0.0165 (7)−0.0011 (7)
O20.0772 (12)0.0351 (8)0.0567 (9)0.0061 (9)−0.0217 (9)0.0055 (7)
O30.0506 (10)0.0414 (8)0.0548 (8)−0.0064 (8)−0.0222 (8)0.0105 (7)
O40.0706 (12)0.0453 (8)0.0638 (10)0.0007 (9)−0.0276 (10)−0.0127 (8)
O50.0524 (10)0.0516 (9)0.0430 (8)0.0055 (8)−0.0141 (8)−0.0009 (7)
O60.0684 (12)0.0394 (8)0.0505 (9)0.0050 (9)−0.0110 (9)0.0016 (7)
N10.0366 (9)0.0429 (9)0.0308 (8)0.0065 (8)−0.0034 (8)0.0020 (7)
N20.0394 (10)0.0373 (9)0.0356 (8)0.0034 (8)−0.0070 (8)0.0044 (7)
C10.0326 (11)0.0389 (10)0.0333 (9)0.0042 (9)0.0022 (8)−0.0020 (8)
C20.0319 (10)0.0339 (9)0.0332 (9)−0.0007 (9)−0.0005 (8)−0.0039 (8)
C30.0357 (11)0.0380 (10)0.0344 (9)−0.0002 (10)−0.0025 (9)0.0003 (8)
C40.0389 (12)0.0462 (11)0.0393 (10)−0.0042 (10)−0.0058 (10)−0.0047 (9)
C50.0442 (13)0.0380 (11)0.0525 (12)−0.0065 (10)−0.0029 (11)−0.0063 (9)
C60.0450 (13)0.0335 (10)0.0469 (11)0.0031 (10)0.0012 (11)0.0001 (9)
C70.0418 (12)0.0381 (10)0.0365 (10)0.0068 (11)−0.0019 (9)0.0038 (8)
C80.0424 (12)0.0366 (10)0.0323 (10)0.0055 (10)0.0005 (9)0.0019 (8)
C90.0356 (11)0.0333 (9)0.0302 (9)0.0016 (9)0.0021 (8)0.0020 (7)
C100.0446 (12)0.0325 (10)0.0377 (10)0.0031 (10)−0.0014 (10)0.0007 (8)
C110.0419 (13)0.0376 (10)0.0360 (10)−0.0013 (10)−0.0009 (9)−0.0064 (8)
C120.0357 (11)0.0438 (11)0.0283 (9)0.0039 (9)0.0002 (9)0.0030 (8)
C130.0508 (13)0.0314 (10)0.0414 (10)0.0050 (10)−0.0056 (10)0.0021 (9)
C140.0442 (12)0.0345 (10)0.0372 (10)−0.0001 (9)−0.0066 (10)−0.0010 (8)
C150.0480 (14)0.0602 (14)0.0410 (11)−0.0083 (13)−0.0079 (11)0.0006 (10)
C160.0456 (13)0.0630 (14)0.0478 (12)−0.0021 (12)−0.0128 (11)0.0145 (11)
O1—C21.359 (2)C4—H40.9300
O1—H10.8200C5—C61.377 (3)
O2—C81.232 (2)C5—H50.9300
O3—C31.371 (2)C6—H60.9300
O3—C161.423 (2)C7—H70.9300
O4—C111.377 (2)C8—C91.492 (3)
O4—C151.427 (3)C9—C141.394 (3)
O5—C121.378 (2)C9—C101.405 (3)
O5—C151.435 (3)C10—C111.369 (3)
O6—H6A0.857 (10)C10—H100.9300
O6—H6B0.848 (10)C11—C121.381 (3)
N1—C71.282 (3)C12—C131.363 (3)
N1—N21.387 (2)C13—C141.395 (3)
N2—C81.352 (3)C13—H130.9300
N2—H20.899 (10)C14—H140.9300
C1—C21.394 (3)C15—H15A0.9700
C1—C61.404 (3)C15—H15B0.9700
C1—C71.455 (3)C16—H16A0.9600
C2—C31.408 (3)C16—H16B0.9600
C3—C41.382 (3)C16—H16C0.9600
C4—C51.392 (3)
C2—O1—H1109.5N2—C8—C9116.35 (16)
C3—O3—C16117.72 (17)C14—C9—C10119.66 (18)
C11—O4—C15105.99 (16)C14—C9—C8123.96 (18)
C12—O5—C15105.81 (15)C10—C9—C8116.36 (17)
H6A—O6—H6B105.5 (19)C11—C10—C9117.68 (18)
C7—N1—N2114.10 (16)C11—C10—H10121.2
C8—N2—N1120.86 (16)C9—C10—H10121.2
C8—N2—H2122.6 (19)C10—C11—O4128.26 (18)
N1—N2—H2116.6 (19)C10—C11—C12121.75 (19)
C2—C1—C6119.08 (18)O4—C11—C12109.99 (18)
C2—C1—C7123.01 (19)C13—C12—O5128.10 (17)
C6—C1—C7117.90 (18)C13—C12—C11122.03 (18)
O1—C2—C1123.91 (17)O5—C12—C11109.86 (17)
O1—C2—C3116.37 (16)C12—C13—C14117.03 (17)
C1—C2—C3119.72 (17)C12—C13—H13121.5
O3—C3—C4125.24 (18)C14—C13—H13121.5
O3—C3—C2114.56 (17)C9—C14—C13121.83 (18)
C4—C3—C2120.20 (18)C9—C14—H14119.1
C3—C4—C5120.09 (19)C13—C14—H14119.1
C3—C4—H4120.0O4—C15—O5108.32 (17)
C5—C4—H4120.0O4—C15—H15A110.0
C6—C5—C4120.1 (2)O5—C15—H15A110.0
C6—C5—H5120.0O4—C15—H15B110.0
C4—C5—H5120.0O5—C15—H15B110.0
C5—C6—C1120.83 (19)H15A—C15—H15B108.4
C5—C6—H6119.6O3—C16—H16A109.5
C1—C6—H6119.6O3—C16—H16B109.5
N1—C7—C1123.44 (18)H16A—C16—H16B109.5
N1—C7—H7118.3O3—C16—H16C109.5
C1—C7—H7118.3H16A—C16—H16C109.5
O2—C8—N2122.73 (19)H16B—C16—H16C109.5
O2—C8—C9120.92 (19)
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.822.042.743 (2)143
O1—H1···O60.822.563.001 (2)115
N2—H2···O6i0.90 (1)2.08 (1)2.962 (2)168 (3)
O6—H6A···O20.86 (1)1.88 (1)2.728 (2)170 (3)
O6—H6B···O1ii0.85 (1)2.27 (2)3.043 (2)152 (2)
O6—H6B···O3ii0.85 (1)2.54 (2)3.226 (2)139 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.822.042.743 (2)143
O1—H1⋯O60.822.563.001 (2)115
N2—H2⋯O6i0.899 (10)2.075 (11)2.962 (2)168 (3)
O6—H6A⋯O20.857 (10)1.880 (12)2.728 (2)170 (3)
O6—H6B⋯O1ii0.848 (10)2.269 (16)3.043 (2)152 (2)
O6—H6B⋯O3ii0.848 (10)2.538 (19)3.226 (2)139 (2)

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antimicrobial activity of some new hydrazones of 4-fluorobenzoic acid hydrazide and 3-acetyl-2,5-disubstituted-1,3,4-oxadiazolines.

Authors:  Sevim Rollas; Nehir Gulerman; Habibe Erdeniz
Journal:  Farmaco       Date:  2002-02

3.  Synthesis and characterization of novel hydrazide-hydrazones and the study of their structure-antituberculosis activity.

Authors:  Koçyiğit-Kaymakçioğlu Bedia; Oruç Elçin; Unsalan Seda; Kandemirli Fatma; Shvets Nathaly; Rollas Sevim; Anatholy Dimoglo
Journal:  Eur J Med Chem       Date:  2006-08-17       Impact factor: 6.514

4.  (E)-N'-[1-(4-Amino-phen-yl)ethyl-idene]benzohydrazide.

Authors:  Shang Shan; Yu-Liang Tian; Shan-Heng Wang; Wen-Long Wang; Ying-Li Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-28

5.  2-Hydr-oxy-(2-methyl-1H-indol-3-ylmethyl-idene)benzohydrazide ethanol solvate.

Authors:  Wagee A Yehye; Azhar Ariffin; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-03

6.  (E)-3-Bromo-N'-(5-bromo-2-hydroxy-benzyl-idene)benzohydrazide.

Authors:  Lan-Zhu Qu; Tao Yang; Guo-Biao Cao; Xiao-Ya Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-04

7.  N'-[(E)-1-Phenyl-ethyl-idene]benzo-hydrazide.

Authors:  Hoong-Kun Fun; K V Sujith; P S Patil; B Kalluraya; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20
  7 in total
  1 in total

1.  1-[5-(2H-1,3-Benzodioxol-5-yl)-3-(4-methyl-phen-yl)-2-pyrazolin-1-yl]ethanone.

Authors:  Wan-Sin Loh; Ibrahim Abdul Razak; M Abdul Rahiman; G N Ravikumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-13
  1 in total

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