Literature DB >> 21581359

A second monoclinic polymorph of 4,4'-[butane-1,4-diylbis(nitrilo-methyl-idyne)]dibenzonitrile.

Reza Kia, Hoong-Kun Fun, Hadi Kargar.   

Abstract

The asymmetric unit of the title Schiff base compound, C(20)H(18)N(4), contains one half-mol-ecule, lying across a crystallographic inversion centre and adopting an E configuration with respect to the C=N bonds. The imino group is coplanar with the benzene ring with a maximun deviation of 0.096 (1) Å for the N atom. Within the molecule, the planar units are parallel but extend in opposite directions from the methylene bridge. In the crystal structure, neighbouring mol-ecules are linked together by weak inter-molecular C-H⋯N hydrogen bonds involving the cyano N atoms, forming R(2) (2)(10) ring motifs.

Entities:  

Year:  2008        PMID: 21581359      PMCID: PMC2960069          DOI: 10.1107/S1600536808037537

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, see: Casellato & Vigato (1977 ▶); Calligaris & Randaccio (1987 ▶). For related structures, see: Fun et al. (2008 ▶); Fun, Kia & Kargar (2008a ▶,b ▶); Fun & Kia (2008a ▶,b ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H18N4 M = 314.38 Monoclinic, a = 4.9958 (1) Å b = 14.8164 (2) Å c = 11.6633 (2) Å β = 97.310 (1)° V = 856.30 (3) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 100.0 (1) K 0.39 × 0.29 × 0.28 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.891, T max = 0.979 18411 measured reflections 4473 independent reflections 3659 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.135 S = 1.04 4473 reflections 109 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAIn class="Chemical">NT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037537/hk2569sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037537/hk2569Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H18N4F000 = 332
Mr = 314.38Dx = 1.219 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6822 reflections
a = 4.9958 (1) Åθ = 2.2–39.9º
b = 14.8164 (2) ŵ = 0.08 mm1
c = 11.6633 (2) ÅT = 100.0 (1) K
β = 97.310 (1)ºBlock, yellow
V = 856.30 (3) Å30.39 × 0.29 × 0.28 mm
Z = 2
Bruker SMART APEXII CCD area-detector diffractometer4473 independent reflections
Radiation source: fine-focus sealed tube3659 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.026
T = 100.0(1) Kθmax = 37.5º
φ and ω scansθmin = 2.8º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −8→8
Tmin = 0.891, Tmax = 0.979k = −24→25
18411 measured reflectionsl = −19→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044H-atom parameters constrained
wR(F2) = 0.135  w = 1/[σ2(Fo2) + (0.0727P)2 + 0.1307P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
4473 reflectionsΔρmax = 0.55 e Å3
109 parametersΔρmin = −0.26 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.01080 (11)0.32548 (4)0.04403 (5)0.01925 (11)
N21.09394 (17)−0.03532 (5)0.17351 (7)0.03381 (17)
C10.40142 (14)0.18220 (4)0.04338 (6)0.01953 (12)
H1A0.30660.1973−0.02790.023*
C20.59829 (14)0.11593 (5)0.04968 (6)0.02080 (12)
H2A0.63600.0866−0.01690.025*
C30.74003 (13)0.09356 (4)0.15748 (6)0.01898 (11)
C40.68642 (13)0.13779 (5)0.25771 (6)0.02032 (12)
H4A0.78270.12310.32880.024*
C50.48772 (13)0.20402 (4)0.25021 (5)0.01888 (11)
H5A0.45030.23350.31680.023*
C60.34401 (12)0.22663 (4)0.14350 (5)0.01610 (11)
C70.13465 (12)0.29707 (4)0.13917 (5)0.01716 (11)
H7A0.09190.32150.20800.021*
C8−0.19246 (13)0.39541 (4)0.05029 (6)0.02132 (12)
H8A−0.19370.41350.13010.026*
H8B−0.36940.37150.02210.026*
C9−0.13397 (12)0.47738 (4)−0.02174 (6)0.01933 (12)
H9A−0.13140.4587−0.10130.023*
H9B−0.27850.5209−0.02040.023*
C100.93805 (15)0.02262 (5)0.16554 (6)0.02439 (14)
U11U22U33U12U13U23
N10.0200 (2)0.0161 (2)0.0217 (2)0.00380 (17)0.00313 (18)0.00211 (17)
N20.0380 (4)0.0346 (4)0.0290 (3)0.0179 (3)0.0052 (3)0.0058 (3)
C10.0237 (3)0.0179 (2)0.0164 (2)0.0047 (2)0.00064 (19)0.00065 (19)
C20.0249 (3)0.0188 (3)0.0187 (3)0.0055 (2)0.0026 (2)0.0003 (2)
C30.0188 (2)0.0166 (2)0.0215 (3)0.00276 (18)0.00223 (19)0.00326 (19)
C40.0197 (2)0.0220 (3)0.0185 (3)0.0020 (2)−0.00060 (19)0.0026 (2)
C50.0199 (2)0.0200 (3)0.0163 (2)0.00113 (19)0.00059 (18)−0.00036 (19)
C60.0173 (2)0.0140 (2)0.0168 (2)0.00002 (17)0.00157 (17)0.00093 (17)
C70.0183 (2)0.0148 (2)0.0187 (2)0.00041 (17)0.00331 (18)−0.00005 (18)
C80.0179 (2)0.0180 (2)0.0289 (3)0.00373 (19)0.0065 (2)0.0041 (2)
C90.0152 (2)0.0177 (2)0.0252 (3)0.00334 (17)0.00291 (19)0.0039 (2)
C100.0252 (3)0.0242 (3)0.0238 (3)0.0065 (2)0.0032 (2)0.0043 (2)
N1—C71.2714 (8)C4—H4A0.9300
N1—C81.4590 (8)C5—C61.3962 (9)
N2—C101.1548 (9)C5—H5A0.9300
C1—C21.3851 (9)C6—C71.4740 (8)
C1—C61.4015 (9)C7—H7A0.9300
C1—H1A0.9300C8—C91.5260 (9)
C2—C31.4019 (9)C8—H8A0.9700
C2—H2A0.9300C8—H8B0.9700
C3—C41.3955 (10)C9—C9i1.5249 (13)
C3—C101.4382 (9)C9—H9A0.9700
C4—C51.3906 (9)C9—H9B0.9700
C7—N1—C8117.13 (6)C1—C6—C7121.58 (5)
C2—C1—C6120.53 (6)N1—C7—C6121.92 (6)
C2—C1—H1A119.7N1—C7—H7A119.0
C6—C1—H1A119.7C6—C7—H7A119.0
C1—C2—C3119.30 (6)N1—C8—C9110.76 (5)
C1—C2—H2A120.3N1—C8—H8A109.5
C3—C2—H2A120.3C9—C8—H8A109.5
C4—C3—C2120.75 (6)N1—C8—H8B109.5
C4—C3—C10119.48 (6)C9—C8—H8B109.5
C2—C3—C10119.75 (6)H8A—C8—H8B108.1
C5—C4—C3119.36 (6)C9i—C9—C8112.85 (7)
C5—C4—H4A120.3C9i—C9—H9A109.0
C3—C4—H4A120.3C8—C9—H9A109.0
C4—C5—C6120.49 (6)C9i—C9—H9B109.0
C4—C5—H5A119.8C8—C9—H9B109.0
C6—C5—H5A119.8H9A—C9—H9B107.8
C5—C6—C1119.57 (6)N2—C10—C3178.58 (8)
C5—C6—C7118.86 (5)
C6—C1—C2—C30.04 (10)C2—C1—C6—C50.30 (10)
C1—C2—C3—C4−0.57 (10)C2—C1—C6—C7−179.71 (6)
C1—C2—C3—C10177.78 (6)C8—N1—C7—C6−179.98 (5)
C2—C3—C4—C50.76 (10)C5—C6—C7—N1174.67 (6)
C10—C3—C4—C5−177.60 (6)C1—C6—C7—N1−5.31 (10)
C3—C4—C5—C6−0.41 (10)C7—N1—C8—C9124.91 (7)
C4—C5—C6—C1−0.12 (10)N1—C8—C9—C9i−62.65 (9)
C4—C5—C6—C7179.90 (6)
D—H···AD—HH···AD···AD—H···A
C2—H2A···N2ii0.932.523.4037 (11)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯N2i0.932.523.4037 (11)158

Symmetry code: (i) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-25

3.  4,4'-[Butane-1,4-diylbis(nitrilo-methyl-idyne)]dibenzonitrile.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-30

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

6.  {4,4'-Dimeth-oxy-2,2'-[1,1'-(ethane-1,2-diyldinitrilo)diethyl-idyne]diphenolato}nickel(II) hemihydrate.

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