Literature DB >> 21581310

2,2-Dimethyl-N,N'-bis-(4-nitro-benzyl-idene)propane-1,3-diamine.

Hoong-Kun Fun, Hadi Kargar, Reza Kia.   

Abstract

In the title compound, C(19)H(20)N(4)O(4), a potential bidentate Schiff base ligand, each imino (C=N) functional group is coplanar with the adjacent benzene ring. The two benzene rings form a dihedral angle of 10.52 (6)°. Inter-molecular C-H⋯O contacts link neighbouring mol-ecules into supra-molecular array with an R(2) (2)(32) ring motif and a C-H⋯π contact is also present.

Entities:  

Year:  2008        PMID: 21581310      PMCID: PMC2960098          DOI: 10.1107/S1600536808037033

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For related structures, see: Li et al. (2005 ▶); Bomfim et al. (2005 ▶); Glidewell et al. (2005 ▶, 2006 ▶); Sun et al. (2004 ▶); Fun et al. (2008a ▶,b ▶).

Experimental

Crystal data

C19H20N4O4 M = 368.39 Monoclinic, a = 7.8219 (1) Å b = 19.9716 (4) Å c = 12.0125 (3) Å β = 92.831 (1)° V = 1874.25 (6) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 (1) K 0.45 × 0.19 × 0.08 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.959, T max = 0.993 21845 measured reflections 6784 independent reflections 4307 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.152 S = 1.04 6784 reflections 244 parameters H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808037033/tk2324sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037033/tk2324Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H20N4O4F000 = 776
Mr = 368.39Dx = 1.306 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3284 reflections
a = 7.8219 (1) Åθ = 2.7–28.9º
b = 19.9716 (4) ŵ = 0.09 mm1
c = 12.0125 (3) ÅT = 100 (1) K
β = 92.831 (1)ºBlock, colourless
V = 1874.25 (6) Å30.45 × 0.19 × 0.08 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer6784 independent reflections
Radiation source: fine-focus sealed tube4307 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.048
T = 100(1) Kθmax = 32.6º
φ and ω scansθmin = 2.0º
Absorption correction: multi-scan(SADABS; Bruker, 2005)h = −11→11
Tmin = 0.959, Tmax = 0.993k = −30→24
21845 measured reflectionsl = −16→18
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.152  w = 1/[σ2(Fo2) + (0.063P)2 + 0.2454P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
6784 reflectionsΔρmax = 0.36 e Å3
244 parametersΔρmin = −0.23 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Experimental. The low-temperature data was collected with the Oxford Cyrosystem Cobra low-temperature attachment.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.36590 (14)0.55914 (6)0.45685 (10)0.0335 (3)
O21.36634 (15)0.48567 (6)0.32431 (10)0.0376 (3)
O30.04816 (14)0.42804 (6)1.17606 (9)0.0317 (3)
O40.13096 (14)0.52456 (5)1.11560 (10)0.0313 (3)
N10.91963 (15)0.26572 (6)0.65265 (11)0.0229 (3)
N20.44695 (14)0.27677 (6)0.73309 (11)0.0232 (3)
N31.32746 (15)0.50399 (7)0.41710 (12)0.0263 (3)
N40.12292 (14)0.46308 (6)1.10932 (10)0.0240 (3)
C11.07594 (17)0.43692 (7)0.64720 (12)0.0214 (3)
H1A1.03480.45120.71460.026*
C21.17251 (17)0.48038 (7)0.58500 (12)0.0222 (3)
H2A1.19830.52340.61030.027*
C31.22894 (16)0.45767 (7)0.48441 (12)0.0212 (3)
C41.19437 (18)0.39416 (8)0.44352 (13)0.0254 (3)
H4A1.23370.38060.37530.031*
C51.09965 (17)0.35135 (7)0.50692 (13)0.0245 (3)
H5A1.07510.30830.48130.029*
C61.04054 (16)0.37232 (7)0.60928 (12)0.0195 (3)
C70.94133 (16)0.32672 (7)0.67822 (12)0.0205 (3)
H7A0.89360.34320.74210.025*
C80.81845 (17)0.22410 (7)0.72454 (12)0.0220 (3)
H8A0.78330.25060.78710.026*
H8B0.88850.18740.75370.026*
C90.65824 (17)0.19558 (7)0.66089 (12)0.0211 (3)
C100.52727 (18)0.25158 (7)0.63434 (13)0.0228 (3)
H10A0.58430.28830.59860.027*
H10B0.43910.23460.58210.027*
C110.44070 (16)0.33980 (7)0.74535 (12)0.0211 (3)
H11A0.49010.36730.69330.025*
C120.35718 (16)0.37059 (7)0.83998 (12)0.0192 (3)
C130.25521 (16)0.33267 (7)0.90909 (12)0.0214 (3)
H13A0.23840.28730.89460.026*
C140.17916 (17)0.36202 (7)0.99872 (12)0.0222 (3)
H14A0.11250.33691.04530.027*
C150.20531 (16)0.43004 (7)1.01696 (12)0.0203 (3)
C160.30321 (16)0.46938 (7)0.94913 (12)0.0210 (3)
H16A0.31730.51490.96270.025*
C170.37936 (17)0.43876 (7)0.86057 (12)0.0215 (3)
H17A0.44610.46410.81430.026*
C180.58134 (19)0.14167 (8)0.73376 (14)0.0289 (3)
H18A0.48110.12320.69590.043*
H18B0.55070.16110.80310.043*
H18C0.66390.10680.74810.043*
C190.70671 (19)0.16493 (7)0.54990 (13)0.0259 (3)
H19A0.60590.14770.51110.039*
H19B0.78700.12920.56380.039*
H19C0.75770.19870.50520.039*
U11U22U33U12U13U23
O10.0318 (6)0.0268 (6)0.0423 (7)−0.0069 (5)0.0043 (5)0.0051 (5)
O20.0377 (6)0.0447 (7)0.0314 (7)−0.0070 (5)0.0128 (5)0.0041 (5)
O30.0332 (6)0.0354 (6)0.0276 (6)−0.0072 (5)0.0108 (5)−0.0019 (5)
O40.0381 (6)0.0230 (6)0.0334 (7)0.0044 (4)0.0082 (5)−0.0026 (5)
N10.0213 (5)0.0232 (6)0.0244 (7)−0.0026 (4)0.0020 (5)−0.0003 (5)
N20.0211 (5)0.0225 (6)0.0261 (7)0.0004 (4)0.0023 (5)−0.0012 (5)
N30.0185 (5)0.0297 (7)0.0308 (7)−0.0009 (5)0.0019 (5)0.0075 (6)
N40.0202 (5)0.0280 (7)0.0238 (7)0.0009 (5)0.0024 (5)−0.0016 (5)
C10.0197 (6)0.0234 (7)0.0211 (7)0.0017 (5)0.0010 (5)−0.0015 (6)
C20.0197 (6)0.0212 (7)0.0255 (8)−0.0003 (5)−0.0016 (5)−0.0005 (6)
C30.0162 (6)0.0235 (7)0.0240 (7)0.0008 (5)0.0021 (5)0.0055 (6)
C40.0255 (7)0.0286 (8)0.0229 (8)−0.0007 (6)0.0076 (6)−0.0018 (6)
C50.0254 (7)0.0228 (7)0.0257 (8)−0.0011 (5)0.0051 (6)−0.0037 (6)
C60.0173 (6)0.0204 (6)0.0207 (7)0.0001 (5)0.0011 (5)0.0007 (5)
C70.0187 (6)0.0234 (7)0.0196 (7)−0.0003 (5)0.0018 (5)−0.0004 (6)
C80.0239 (6)0.0208 (7)0.0215 (7)−0.0013 (5)0.0020 (5)0.0012 (6)
C90.0218 (6)0.0177 (6)0.0238 (7)−0.0015 (5)0.0013 (5)−0.0003 (6)
C100.0241 (6)0.0216 (7)0.0227 (8)0.0002 (5)0.0002 (5)−0.0019 (6)
C110.0195 (6)0.0219 (7)0.0220 (7)−0.0001 (5)0.0018 (5)0.0010 (6)
C120.0170 (6)0.0200 (6)0.0204 (7)0.0021 (5)−0.0001 (5)0.0015 (5)
C130.0195 (6)0.0179 (6)0.0268 (8)−0.0007 (5)0.0015 (5)0.0002 (6)
C140.0192 (6)0.0229 (7)0.0248 (8)0.0000 (5)0.0036 (5)0.0046 (6)
C150.0180 (6)0.0228 (7)0.0201 (7)0.0024 (5)0.0010 (5)−0.0002 (5)
C160.0207 (6)0.0180 (6)0.0242 (7)0.0002 (5)0.0007 (5)0.0003 (6)
C170.0207 (6)0.0211 (7)0.0229 (7)−0.0005 (5)0.0027 (5)0.0031 (6)
C180.0282 (7)0.0228 (7)0.0357 (9)−0.0041 (6)0.0025 (6)0.0048 (7)
C190.0275 (7)0.0212 (7)0.0289 (8)0.0011 (5)−0.0008 (6)−0.0045 (6)
O1—N31.2319 (17)C8—H8B0.9700
O2—N31.2256 (17)C9—C181.530 (2)
O3—N41.2330 (15)C9—C191.532 (2)
O4—N41.2316 (16)C9—C101.539 (2)
N1—C71.2657 (18)C10—H10A0.9700
N1—C81.4597 (17)C10—H10B0.9700
N2—C111.2687 (18)C11—C121.4732 (19)
N2—C101.4591 (18)C11—H11A0.9300
N3—C31.4714 (18)C12—C171.3931 (19)
N4—C151.4671 (18)C12—C131.4014 (18)
C1—C61.3914 (19)C13—C141.3857 (19)
C1—C21.3921 (19)C13—H13A0.9300
C1—H1A0.9300C14—C151.389 (2)
C2—C31.383 (2)C14—H14A0.9300
C2—H2A0.9300C15—C161.3890 (18)
C3—C41.382 (2)C16—C171.3868 (19)
C4—C51.3840 (19)C16—H16A0.9300
C4—H4A0.9300C17—H17A0.9300
C5—C61.3990 (19)C18—H18A0.9600
C5—H5A0.9300C18—H18B0.9600
C6—C71.4768 (18)C18—H18C0.9600
C7—H7A0.9300C19—H19A0.9600
C8—C91.544 (2)C19—H19B0.9600
C8—H8A0.9700C19—H19C0.9600
C7—N1—C8118.34 (12)C10—C9—C8110.49 (11)
C11—N2—C10117.20 (12)N2—C10—C9113.01 (12)
O2—N3—O1123.55 (13)N2—C10—H10A109.0
O2—N3—C3118.19 (13)C9—C10—H10A109.0
O1—N3—C3118.26 (13)N2—C10—H10B109.0
O4—N4—O3123.39 (12)C9—C10—H10B109.0
O4—N4—C15118.14 (12)H10A—C10—H10B107.8
O3—N4—C15118.47 (12)N2—C11—C12121.65 (13)
C6—C1—C2120.46 (13)N2—C11—H11A119.2
C6—C1—H1A119.8C12—C11—H11A119.2
C2—C1—H1A119.8C17—C12—C13119.50 (12)
C3—C2—C1118.00 (13)C17—C12—C11119.26 (12)
C3—C2—H2A121.0C13—C12—C11121.24 (12)
C1—C2—H2A121.0C14—C13—C12120.69 (13)
C4—C3—C2123.10 (13)C14—C13—H13A119.7
C4—C3—N3118.70 (13)C12—C13—H13A119.7
C2—C3—N3118.18 (13)C13—C14—C15118.07 (12)
C3—C4—C5118.16 (13)C13—C14—H14A121.0
C3—C4—H4A120.9C15—C14—H14A121.0
C5—C4—H4A120.9C16—C15—C14122.80 (13)
C4—C5—C6120.52 (14)C16—C15—N4117.69 (12)
C4—C5—H5A119.7C14—C15—N4119.48 (12)
C6—C5—H5A119.7C17—C16—C15118.07 (13)
C1—C6—C5119.75 (13)C17—C16—H16A121.0
C1—C6—C7119.33 (12)C15—C16—H16A121.0
C5—C6—C7120.92 (13)C16—C17—C12120.85 (12)
N1—C7—C6121.69 (13)C16—C17—H17A119.6
N1—C7—H7A119.2C12—C17—H17A119.6
C6—C7—H7A119.2C9—C18—H18A109.5
N1—C8—C9111.56 (12)C9—C18—H18B109.5
N1—C8—H8A109.3H18A—C18—H18B109.5
C9—C8—H8A109.3C9—C18—H18C109.5
N1—C8—H8B109.3H18A—C18—H18C109.5
C9—C8—H8B109.3H18B—C18—H18C109.5
H8A—C8—H8B108.0C9—C19—H19A109.5
C18—C9—C19109.76 (12)C9—C19—H19B109.5
C18—C9—C10110.70 (11)H19A—C19—H19B109.5
C19—C9—C10107.51 (12)C9—C19—H19C109.5
C18—C9—C8107.98 (12)H19A—C19—H19C109.5
C19—C9—C8110.41 (11)H19B—C19—H19C109.5
C6—C1—C2—C31.0 (2)C11—N2—C10—C9131.95 (13)
C1—C2—C3—C4−0.2 (2)C18—C9—C10—N249.59 (16)
C1—C2—C3—N3178.53 (12)C19—C9—C10—N2169.47 (11)
O2—N3—C3—C44.2 (2)C8—C9—C10—N2−69.98 (14)
O1—N3—C3—C4−176.02 (13)C10—N2—C11—C12177.85 (12)
O2—N3—C3—C2−174.58 (13)N2—C11—C12—C17168.88 (14)
O1—N3—C3—C25.17 (19)N2—C11—C12—C13−11.5 (2)
C2—C3—C4—C5−0.4 (2)C17—C12—C13—C14−1.2 (2)
N3—C3—C4—C5−179.16 (13)C11—C12—C13—C14179.15 (13)
C3—C4—C5—C60.2 (2)C12—C13—C14—C150.8 (2)
C2—C1—C6—C5−1.2 (2)C13—C14—C15—C160.3 (2)
C2—C1—C6—C7178.54 (12)C13—C14—C15—N4178.38 (13)
C4—C5—C6—C10.6 (2)O4—N4—C15—C166.84 (19)
C4—C5—C6—C7−179.19 (13)O3—N4—C15—C16−173.73 (12)
C8—N1—C7—C6−179.39 (12)O4—N4—C15—C14−171.35 (13)
C1—C6—C7—N1−173.22 (14)O3—N4—C15—C148.09 (19)
C5—C6—C7—N16.5 (2)C14—C15—C16—C17−0.9 (2)
C7—N1—C8—C9118.97 (14)N4—C15—C16—C17−179.01 (12)
N1—C8—C9—C18168.26 (11)C15—C16—C17—C120.4 (2)
N1—C8—C9—C1948.27 (15)C13—C12—C17—C160.6 (2)
N1—C8—C9—C10−70.53 (14)C11—C12—C17—C16−179.76 (13)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O4i0.932.523.4330 (18)168
C17—H17A···O2ii0.932.483.4063 (18)171
C19—H19A···Cg1iii0.962.863.8058 (16)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O4i0.932.523.4330 (18)168
C17—H17A⋯O2ii0.932.483.4063 (18)171
C19—H19ACg1iii0.962.863.8058 (16)171

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C12–C17 benzene ring.

  5 in total

1.  Three-dimensional supramolecular structures in (E,E)-N,N'-bis(4-nitrobenzylidene)butane-1,4-diamine and (E,E)-N,N'-bis(4-nitrobenzylidene)hexane-1,6-diamine.

Authors:  Christopher Glidewell; John N Low; Janet M S Skakle; James L Wardell
Journal:  Acta Crystallogr C       Date:  2005-12-10       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  pi-Stacked hydrogen-bonded sheets in N,N'-bis(4-nitrobenzylidene)ethane-1,2-diamine and pi-stacked hydrogen-bonded chains in N,N'-bis(4-nitrobenzylidene)propane-1,3-diamine.

Authors:  Joao A S Bomfim; James L Wardell; John N Low; Janet M S Skakle; Christopher Glidewell
Journal:  Acta Crystallogr C       Date:  2004-12-18       Impact factor: 1.172

4.  4,4'-[2,2-Dimethyl-propane-1,3-diyl-bis(nitrilo-methyl-idyne)]dibenzonitrile.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-19

5.  N,N'-Bis(4-chloro-benzyl-idene)-2,2-dimethyl-propane-1,3-diamine.

Authors:  Hoong-Kun Fun; Hadi Kargar; Reza Kia
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-08
  5 in total

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