Literature DB >> 21581289

r-2,c-6-Bis(4-chloro-phen-yl)-c-3,t-3-dimethyl-piperidin-4-one.

S S Ilango, S Ponnuswamy, P Gayathri, A Thiruvalluvar, R J Butcher.   

Abstract

In the title mol-ecule, C(19)H(19)Cl(2)NO, the piperidine ring adopts a chair conformation and the dihedral angle between the two benzene rings is 77.23 (7)°. In the crystal structure, mol-ecules are linked by N-H⋯O and C-H⋯O hydrogen bonds, and a weak C-H⋯π inter-action is also observed.

Entities:  

Year:  2008        PMID: 21581289      PMCID: PMC2960012          DOI: 10.1107/S1600536808036325

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related crystal structure, see: Gayathri et al. (2008 ▶). For background on the biological activities of piperidones, see: Dimmock et al. (2001 ▶); Perumal et al. (2001 ▶). For the synthesis and stereodynamics of piperidin-4-ones and their derivatives, see: Ponnuswamy et al. (2002 ▶). For the synthesis, see: Noller & Baliah (1948 ▶).

Experimental

Crystal data

C19H19Cl2NO M = 348.25 Orthorhombic, a = 13.1627 (5) Å b = 22.4739 (7) Å c = 5.8794 (2) Å V = 1739.23 (10) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 200 (2) K 0.44 × 0.31 × 0.22 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.950, T max = 1.000 (expected range = 0.874–0.920) 19147 measured reflections 5694 independent reflections 2460 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.083 S = 0.82 5694 reflections 212 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.31 e Å−3 Absolute structure: Flack (1983 ▶), 2278 Friedel pairs Flack parameter: −0.03 (5) Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808036325/hb2832sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808036325/hb2832Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H19Cl2NODx = 1.330 Mg m3
Mr = 348.25Melting point: 402(1) K
Orthorhombic, Pna21Mo Kα radiation λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 4389 reflections
a = 13.1627 (5) Åθ = 4.5–32.5º
b = 22.4739 (7) ŵ = 0.38 mm1
c = 5.8794 (2) ÅT = 200 (2) K
V = 1739.23 (10) Å3Rectangular-plate, colourless
Z = 40.44 × 0.31 × 0.22 mm
F000 = 728
Oxford Diffraction R Gemini diffractometer5694 independent reflections
Radiation source: fine-focus sealed tube2460 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.052
Detector resolution: 10.5081 pixels mm-1θmax = 32.5º
T = 200(2) Kθmin = 4.7º
φ and ω scansh = −18→19
Absorption correction: multi-scan(CrysAlis RED; Oxford Diffraction, 2008)k = −33→33
Tmin = 0.950, Tmax = 1.000l = −8→8
19147 measured reflections
Refinement on F2Hydrogen site location: difmap and geom
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.039  w = 1/[σ2(Fo2) + (0.0371P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.083(Δ/σ)max = 0.001
S = 0.82Δρmax = 0.34 e Å3
5694 reflectionsΔρmin = −0.31 e Å3
212 parametersExtinction correction: none
1 restraintAbsolute structure: Flack (1983), 2278 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.03 (5)
Secondary atom site location: difference Fourier map
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.03898 (4)0.45263 (2)0.55799 (11)0.0585 (2)
Cl20.10182 (5)−0.04812 (2)1.04537 (12)0.0655 (2)
O40.57022 (11)0.24936 (6)1.2121 (2)0.0424 (5)
N10.28387 (13)0.22418 (6)1.0183 (3)0.0312 (5)
C20.32122 (13)0.28540 (7)1.0528 (3)0.0277 (5)
C30.43587 (14)0.28927 (8)0.9833 (3)0.0307 (6)
C40.49124 (15)0.23934 (9)1.1093 (3)0.0341 (6)
C50.44531 (14)0.17905 (9)1.1022 (4)0.0411 (7)
C60.33289 (15)0.18081 (8)1.1659 (3)0.0321 (6)
C210.25298 (15)0.32842 (8)0.9275 (3)0.0312 (6)
C220.21068 (13)0.31249 (8)0.7180 (3)0.0314 (6)
C230.14602 (14)0.35069 (8)0.6055 (3)0.0345 (6)
C240.12245 (15)0.40493 (8)0.7019 (3)0.0352 (6)
C250.16202 (16)0.42206 (8)0.9082 (3)0.0377 (7)
C260.22727 (14)0.38327 (8)1.0207 (3)0.0347 (6)
C310.47926 (14)0.34992 (8)1.0480 (4)0.0439 (7)
C320.45062 (15)0.27850 (10)0.7274 (3)0.0426 (7)
C610.27905 (14)0.12205 (8)1.1398 (3)0.0305 (6)
C620.28440 (17)0.08976 (9)0.9400 (3)0.0439 (7)
C630.23098 (19)0.03820 (9)0.9104 (4)0.0504 (8)
C640.17155 (15)0.01751 (8)1.0837 (4)0.0424 (7)
C650.16451 (18)0.04755 (10)1.2868 (4)0.0461 (8)
C660.21822 (16)0.09989 (10)1.3129 (3)0.0432 (8)
H10.2194 (13)0.2237 (7)1.032 (3)0.023 (5)*
H20.316310.294601.218870.0333*
H5A0.481910.152621.209100.0493*
H5B0.452760.162360.947240.0493*
H60.326390.194361.327220.0385*
H220.226670.274980.652620.0376*
H230.117900.339760.462700.0414*
H250.145170.459570.972510.0452*
H260.254770.394441.163840.0416*
H31A0.442410.381200.966230.0659*
H31B0.551390.351481.007000.0659*
H31C0.471870.356031.212170.0659*
H32A0.415640.309730.641330.0639*
H32B0.422350.239620.686370.0639*
H32C0.523280.279300.691130.0639*
H620.326360.103800.819980.0527*
H630.235130.016990.770960.0605*
H650.123500.032591.406820.0553*
H660.213430.121141.452150.0519*
U11U22U33U12U13U23
Cl10.0547 (3)0.0505 (3)0.0703 (4)0.0179 (3)−0.0132 (4)0.0120 (3)
Cl20.0681 (4)0.0421 (3)0.0864 (4)−0.0195 (3)−0.0183 (4)0.0074 (3)
O40.0273 (8)0.0530 (9)0.0468 (8)−0.0024 (7)−0.0046 (8)0.0054 (7)
N10.0184 (9)0.0324 (8)0.0427 (10)0.0015 (7)−0.0010 (8)0.0036 (7)
C20.0273 (10)0.0267 (9)0.0292 (9)0.0009 (8)0.0047 (10)0.0017 (10)
C30.0262 (11)0.0338 (10)0.0321 (10)−0.0012 (9)0.0015 (9)0.0010 (8)
C40.0225 (10)0.0414 (12)0.0385 (11)0.0026 (9)0.0030 (10)−0.0003 (9)
C50.0293 (11)0.0359 (11)0.0581 (14)0.0052 (9)−0.0109 (11)0.0094 (11)
C60.0329 (11)0.0306 (10)0.0328 (9)0.0049 (9)−0.0053 (9)0.0087 (8)
C210.0223 (10)0.0374 (12)0.0339 (10)−0.0015 (9)0.0035 (9)−0.0045 (9)
C220.0337 (11)0.0273 (10)0.0331 (10)−0.0018 (9)−0.0029 (10)−0.0017 (8)
C230.0307 (11)0.0362 (10)0.0366 (11)0.0023 (9)−0.0043 (9)0.0008 (9)
C240.0306 (11)0.0327 (11)0.0424 (11)0.0012 (9)−0.0018 (10)0.0117 (10)
C250.0354 (12)0.0304 (11)0.0472 (11)0.0037 (10)0.0028 (11)−0.0011 (10)
C260.0282 (10)0.0364 (10)0.0394 (10)0.0017 (9)−0.0005 (10)−0.0045 (9)
C310.0355 (11)0.0386 (11)0.0577 (12)−0.0024 (9)−0.0058 (13)−0.0094 (11)
C320.0360 (13)0.0550 (14)0.0368 (11)−0.0003 (10)0.0049 (11)0.0074 (11)
C610.0304 (11)0.0246 (9)0.0364 (10)0.0045 (9)−0.0026 (9)0.0077 (8)
C620.0537 (15)0.0387 (12)0.0393 (11)−0.0057 (11)0.0080 (11)0.0021 (10)
C630.0657 (17)0.0362 (13)0.0493 (12)−0.0036 (12)−0.0009 (14)−0.0095 (11)
C640.0390 (12)0.0308 (10)0.0573 (14)−0.0048 (9)−0.0099 (13)0.0126 (12)
C650.0384 (14)0.0485 (14)0.0514 (13)−0.0074 (11)−0.0026 (11)0.0076 (11)
C660.0445 (14)0.0455 (14)0.0397 (11)−0.0003 (12)−0.0064 (11)0.0015 (10)
Cl1—C241.7528 (19)C62—C631.367 (3)
Cl2—C641.7518 (19)C63—C641.366 (3)
O4—C41.223 (2)C64—C651.375 (3)
N1—C21.475 (2)C65—C661.381 (3)
N1—C61.456 (2)C2—H21.0000
N1—H10.853 (17)C5—H5A0.9900
C2—C31.566 (3)C5—H5B0.9900
C2—C211.511 (2)C6—H61.0000
C3—C311.526 (3)C22—H220.9500
C3—C321.536 (3)C23—H230.9500
C3—C41.529 (3)C25—H250.9500
C4—C51.484 (3)C26—H260.9500
C5—C61.527 (3)C31—H31A0.9800
C6—C611.507 (3)C31—H31B0.9800
C21—C221.398 (3)C31—H31C0.9800
C21—C261.391 (3)C32—H32A0.9800
C22—C231.378 (3)C32—H32B0.9800
C23—C241.380 (3)C32—H32C0.9800
C24—C251.375 (3)C62—H620.9500
C25—C261.391 (3)C63—H630.9500
C61—C661.387 (3)C65—H650.9500
C61—C621.383 (3)C66—H660.9500
C2—N1—C6113.25 (15)N1—C2—H2108.00
C6—N1—H1112.1 (11)C3—C2—H2108.00
C2—N1—H1109.3 (11)C21—C2—H2108.00
N1—C2—C21109.36 (14)C4—C5—H5A109.00
N1—C2—C3109.70 (14)C4—C5—H5B109.00
C3—C2—C21114.21 (14)C6—C5—H5A109.00
C2—C3—C31110.20 (14)C6—C5—H5B109.00
C2—C3—C4106.98 (14)H5A—C5—H5B108.00
C4—C3—C32107.37 (15)N1—C6—H6109.00
C31—C3—C32109.73 (16)C5—C6—H6109.00
C4—C3—C31110.87 (15)C61—C6—H6109.00
C2—C3—C32111.63 (15)C21—C22—H22120.00
O4—C4—C5121.87 (18)C23—C22—H22120.00
O4—C4—C3120.61 (17)C22—C23—H23120.00
C3—C4—C5117.52 (16)C24—C23—H23120.00
C4—C5—C6111.36 (16)C24—C25—H25121.00
N1—C6—C5107.50 (15)C26—C25—H25121.00
C5—C6—C61114.09 (16)C21—C26—H26119.00
N1—C6—C61108.52 (15)C25—C26—H26119.00
C2—C21—C26121.30 (16)C3—C31—H31A109.00
C2—C21—C22120.15 (16)C3—C31—H31B109.00
C22—C21—C26118.50 (17)C3—C31—H31C109.00
C21—C22—C23120.61 (17)H31A—C31—H31B109.00
C22—C23—C24119.48 (17)H31A—C31—H31C109.00
C23—C24—C25121.64 (17)H31B—C31—H31C109.00
Cl1—C24—C25119.47 (14)C3—C32—H32A109.00
Cl1—C24—C23118.88 (14)C3—C32—H32B109.00
C24—C25—C26118.54 (17)C3—C32—H32C109.00
C21—C26—C25121.22 (17)H32A—C32—H32B109.00
C62—C61—C66117.66 (18)H32A—C32—H32C109.00
C6—C61—C62121.51 (17)H32B—C32—H32C109.00
C6—C61—C66120.76 (16)C61—C62—H62119.00
C61—C62—C63121.81 (19)C63—C62—H62119.00
C62—C63—C64119.2 (2)C62—C63—H63120.00
Cl2—C64—C65119.33 (17)C64—C63—H63120.00
Cl2—C64—C63119.38 (17)C64—C65—H65121.00
C63—C64—C65121.28 (19)C66—C65—H65121.00
C64—C65—C66118.7 (2)C61—C66—H66119.00
C61—C66—C65121.31 (18)C65—C66—H66119.00
C6—N1—C2—C364.86 (19)N1—C6—C61—C6268.3 (2)
C6—N1—C2—C21−169.16 (15)N1—C6—C61—C66−108.6 (2)
C2—N1—C6—C5−64.02 (19)C5—C6—C61—C62−51.5 (2)
C2—N1—C6—C61172.13 (15)C5—C6—C61—C66131.6 (2)
N1—C2—C3—C4−51.75 (18)C2—C21—C22—C23178.11 (17)
N1—C2—C3—C31−172.37 (15)C26—C21—C22—C230.8 (3)
N1—C2—C3—C3265.44 (19)C2—C21—C26—C25−178.05 (17)
C21—C2—C3—C4−174.92 (14)C22—C21—C26—C25−0.8 (3)
C21—C2—C3—C3164.5 (2)C21—C22—C23—C24−0.5 (3)
C21—C2—C3—C32−57.7 (2)C22—C23—C24—Cl1−179.30 (14)
N1—C2—C21—C22−36.1 (2)C22—C23—C24—C250.1 (3)
N1—C2—C21—C26141.12 (18)Cl1—C24—C25—C26179.33 (15)
C3—C2—C21—C2287.3 (2)C23—C24—C25—C26−0.1 (3)
C3—C2—C21—C26−95.5 (2)C24—C25—C26—C210.4 (3)
C2—C3—C4—O4−132.07 (17)C6—C61—C62—C63−176.1 (2)
C2—C3—C4—C547.7 (2)C66—C61—C62—C630.9 (3)
C31—C3—C4—O4−11.9 (2)C6—C61—C66—C65176.77 (19)
C31—C3—C4—C5167.88 (17)C62—C61—C66—C65−0.2 (3)
C32—C3—C4—O4107.97 (19)C61—C62—C63—C64−0.8 (3)
C32—C3—C4—C5−72.3 (2)C62—C63—C64—Cl2179.29 (17)
O4—C4—C5—C6129.70 (19)C62—C63—C64—C650.0 (3)
C3—C4—C5—C6−50.1 (2)Cl2—C64—C65—C66−178.65 (17)
C4—C5—C6—N153.9 (2)C63—C64—C65—C660.6 (3)
C4—C5—C6—C61174.28 (16)C64—C65—C66—C61−0.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4i0.853 (17)2.312 (17)3.092 (2)152.3 (15)
C23—H23···O4ii0.952.563.377 (2)144
C31—H31B···Cg1iii0.982.963.7265 (15)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.853 (17)2.312 (17)3.092 (2)152.3 (15)
C23—H23⋯O4ii0.952.563.377 (2)144
C31—H31BCg1iii0.982.963.7265 (15)136

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 is the centroid of the C61–C66 ring.

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The preparation of some piperidine derivatives by the Mannich reaction.

Authors:  C R NOLLER; V BALIAH
Journal:  J Am Chem Soc       Date:  1948-11       Impact factor: 15.419

3.  A conformational and structure-activity relationship study of cytotoxic 3,5-bis(arylidene)-4-piperidones and related N-acryloyl analogues.

Authors:  J R Dimmock; M P Padmanilayam; R N Puthucode; A J Nazarali; N L Motaganahalli; G A Zello; J W Quail; E O Oloo; H B Kraatz; J S Prisciak; T M Allen; C L Santos; J Balzarini; E De Clercq; E K Manavathu
Journal:  J Med Chem       Date:  2001-02-15       Impact factor: 7.446

4.  r-2,c-6-Bis(4-chloro-phen-yl)-t-3-isopropyl-1-nitro-sopiperidin-4-one.

Authors:  P Gayathri; A Thiruvalluvar; A Manimekalai; S Sivakumar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20
  4 in total
  3 in total

1.  3,3-Dimethyl-cis-2,6-di-p-tolyl-piperidin-4-one.

Authors:  P Gayathri; S S Ilango; S Ponnuswamy; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-12

2.  Crystal structures of three 3-chloro-3-methyl-2,6-di-aryl-piperidin-4-ones.

Authors:  R Arulraj; S Sivakumar; Manpreet Kaur; A Thiruvalluvar; Jerry P Jasinski
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-06

3.  Crystal structure of 1-(2-chloro-acet-yl)-2,6-bis-(4-fluoro-phen-yl)-3,3-di-methyl-piperidin-4-one.

Authors:  S Jothivel; Jibon Kotoky; S Kabilan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-30
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.