| Literature DB >> 25484669 |
S Jothivel1, Jibon Kotoky2, S Kabilan1.
Abstract
In the title mol-ecule, C21H20ClF2NO2, the piperidine ring adopts a slightly distorted boat conformation. The two benzene rings form a dihedral angle of 87.43 (1)°. A weak intra-molecular C-H⋯π inter-action is observed. In the crystal, weak C-H⋯O hydrogen bonds and weak C-H⋯π inter-actions connect the mol-ecules, forming a three-dimensional network.Entities:
Keywords: Piperidone; crystal structure; weak hydrogen bonds
Year: 2014 PMID: 25484669 PMCID: PMC4257194 DOI: 10.1107/S1600536814021278
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1The molecular structure of the title compound, showing 30% probability displacement ellipsoids.
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C16–C21 and C8–C13 rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C5—H5⋯O1i | 0.98 | 2.50 | 3.453 (2) | 165 |
| C15—H15 | 0.97 | 2.46 | 3.429 (3) | 174 |
| C20—H20⋯O2ii | 0.93 | 2.45 | 3.298 (3) | 151 |
| C10—H10⋯ | 0.93 | 2.66 | 3.499 (2) | 151 |
| C17—H17⋯ | 0.93 | 2.85 | 3.771 (2) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2Part of the crystal structure showing weak hydrogen bonds as dashed lines. H atoms not involved in the hydrogen bonds or weak C—H⋯π stacking interactions are not shown.
Experimental details
| Crystal data | |
| Chemical formula | C21H20ClF2NO2 |
|
| 391.83 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 293 |
|
| 13.5270 (3), 10.0150 (2), 15.2560 (3) |
| β (°) | 113.803 (1) |
|
| 1890.97 (7) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.24 |
| Crystal size (mm) | 0.35 × 0.30 × 0.30 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.914, 0.944 |
| No. of measured, independent and observed [ | 17109, 3327, 2643 |
|
| 0.030 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.038, 0.097, 1.02 |
| No. of reflections | 3327 |
| No. of parameters | 245 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.34, −0.42 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▶), SIR92 (Altomare et al., 1993 ▶), SHELXL97 (Sheldrick, 2008 ▶), ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶).
| C21H20ClF2NO2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 6438 reflections |
| θ = 2.6–27.4° | |
| µ = 0.24 mm−1 | |
| β = 113.803 (1)° | Block, colourless |
| 0.35 × 0.30 × 0.30 mm | |
| Bruker APEXII CCD diffractometer | 3327 independent reflections |
| Radiation source: fine-focus sealed tube | 2643 reflections with |
| Graphite monochromator | |
| ω and φ scans | θmax = 25.0°, θmin = 1.7° |
| Absorption correction: multi-scan ( | |
| 17109 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 3327 reflections | Δρmax = 0.34 e Å−3 |
| 245 parameters | Δρmin = −0.42 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0104 (10) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.78563 (14) | −0.24331 (17) | 0.58593 (12) | 0.0380 (4) | |
| H1 | 0.7638 | −0.3211 | 0.6129 | 0.046* | |
| C2 | 0.68341 (15) | −0.1993 (2) | 0.49931 (14) | 0.0480 (5) | |
| C3 | 0.70229 (17) | −0.0678 (2) | 0.46053 (15) | 0.0528 (5) | |
| C4 | 0.78997 (17) | 0.0206 (2) | 0.52812 (14) | 0.0495 (5) | |
| H4A | 0.7675 | 0.1126 | 0.5120 | 0.059* | |
| H4B | 0.8542 | 0.0072 | 0.5157 | 0.059* | |
| C5 | 0.82206 (14) | 0.00286 (17) | 0.63608 (13) | 0.0395 (4) | |
| H5 | 0.7706 | 0.0536 | 0.6534 | 0.047* | |
| C6 | 0.64617 (19) | −0.3065 (2) | 0.42125 (16) | 0.0658 (7) | |
| H6A | 0.6349 | −0.3890 | 0.4479 | 0.099* | |
| H6B | 0.7004 | −0.3188 | 0.3964 | 0.099* | |
| H6C | 0.5798 | −0.2789 | 0.3705 | 0.099* | |
| C7 | 0.59232 (17) | −0.1729 (3) | 0.53339 (19) | 0.0726 (7) | |
| H7A | 0.5767 | −0.2537 | 0.5593 | 0.109* | |
| H7B | 0.5287 | −0.1437 | 0.4802 | 0.109* | |
| H7C | 0.6149 | −0.1050 | 0.5819 | 0.109* | |
| C8 | 0.88456 (15) | −0.28756 (17) | 0.57008 (12) | 0.0379 (4) | |
| C9 | 0.90707 (17) | −0.2532 (2) | 0.49221 (14) | 0.0493 (5) | |
| H9 | 0.8574 | −0.2026 | 0.4430 | 0.059* | |
| C10 | 1.00201 (19) | −0.2928 (2) | 0.48641 (15) | 0.0560 (6) | |
| H10 | 1.0167 | −0.2686 | 0.4341 | 0.067* | |
| C11 | 1.07354 (17) | −0.3676 (2) | 0.55817 (16) | 0.0535 (5) | |
| C12 | 1.05468 (17) | −0.4051 (2) | 0.63625 (15) | 0.0530 (5) | |
| H12 | 1.1047 | −0.4566 | 0.6846 | 0.064* | |
| C13 | 0.96006 (15) | −0.36480 (19) | 0.64150 (13) | 0.0440 (5) | |
| H13 | 0.9462 | −0.3899 | 0.6942 | 0.053* | |
| C14 | 0.82422 (14) | −0.17695 (19) | 0.74942 (13) | 0.0399 (4) | |
| C15 | 0.84427 (18) | −0.0661 (2) | 0.82215 (14) | 0.0524 (5) | |
| H15A | 0.7946 | 0.0068 | 0.7929 | 0.063* | |
| H15B | 0.9172 | −0.0325 | 0.8408 | 0.063* | |
| C16 | 0.93284 (15) | 0.06468 (18) | 0.68828 (13) | 0.0402 (4) | |
| C17 | 1.02557 (16) | 0.0042 (2) | 0.69010 (15) | 0.0493 (5) | |
| H17 | 1.0217 | −0.0819 | 0.6661 | 0.059* | |
| C18 | 1.12403 (17) | 0.0696 (2) | 0.72703 (16) | 0.0586 (6) | |
| H18 | 1.1862 | 0.0289 | 0.7278 | 0.070* | |
| C19 | 1.12733 (17) | 0.1957 (2) | 0.76238 (15) | 0.0566 (6) | |
| C20 | 1.03892 (18) | 0.2570 (2) | 0.76548 (15) | 0.0554 (6) | |
| H20 | 1.0443 | 0.3414 | 0.7925 | 0.066* | |
| C21 | 0.94109 (17) | 0.1907 (2) | 0.72754 (14) | 0.0483 (5) | |
| H21 | 0.8798 | 0.2315 | 0.7284 | 0.058* | |
| N1 | 0.81566 (12) | −0.13914 (14) | 0.66131 (10) | 0.0366 (4) | |
| O1 | 0.81730 (12) | −0.29307 (13) | 0.77065 (9) | 0.0514 (4) | |
| O2 | 0.65146 (16) | −0.03393 (17) | 0.37891 (11) | 0.0883 (6) | |
| F1 | 1.22180 (11) | 0.26360 (14) | 0.79297 (12) | 0.0865 (5) | |
| F2 | 1.16548 (11) | −0.40863 (16) | 0.55128 (10) | 0.0810 (5) | |
| Cl1 | 0.82752 (6) | −0.12066 (7) | 0.92455 (4) | 0.0788 (2) |
| C1 | 0.0399 (10) | 0.0328 (9) | 0.0374 (10) | −0.0039 (8) | 0.0116 (8) | 0.0023 (7) |
| C2 | 0.0406 (11) | 0.0451 (11) | 0.0462 (11) | −0.0035 (9) | 0.0049 (9) | 0.0039 (9) |
| C3 | 0.0533 (12) | 0.0460 (12) | 0.0462 (12) | 0.0049 (10) | 0.0068 (10) | 0.0079 (9) |
| C4 | 0.0551 (12) | 0.0385 (11) | 0.0475 (11) | −0.0011 (9) | 0.0131 (10) | 0.0088 (8) |
| C5 | 0.0398 (10) | 0.0331 (9) | 0.0450 (10) | 0.0005 (8) | 0.0165 (8) | 0.0021 (8) |
| C6 | 0.0652 (15) | 0.0552 (14) | 0.0524 (13) | −0.0129 (11) | −0.0017 (11) | 0.0000 (10) |
| C7 | 0.0391 (12) | 0.0891 (18) | 0.0793 (17) | 0.0016 (12) | 0.0132 (11) | 0.0083 (14) |
| C8 | 0.0435 (10) | 0.0326 (9) | 0.0356 (9) | −0.0046 (8) | 0.0139 (8) | −0.0030 (7) |
| C9 | 0.0580 (13) | 0.0489 (12) | 0.0391 (11) | 0.0019 (10) | 0.0177 (10) | 0.0035 (9) |
| C10 | 0.0683 (14) | 0.0617 (14) | 0.0473 (12) | −0.0067 (11) | 0.0329 (11) | −0.0053 (10) |
| C11 | 0.0484 (12) | 0.0604 (13) | 0.0554 (13) | −0.0021 (10) | 0.0248 (10) | −0.0176 (11) |
| C12 | 0.0488 (12) | 0.0577 (13) | 0.0473 (12) | 0.0078 (10) | 0.0138 (10) | −0.0019 (10) |
| C13 | 0.0481 (11) | 0.0456 (11) | 0.0373 (10) | 0.0021 (9) | 0.0162 (9) | 0.0016 (8) |
| C14 | 0.0371 (10) | 0.0427 (11) | 0.0434 (10) | −0.0002 (8) | 0.0199 (8) | 0.0021 (8) |
| C15 | 0.0667 (14) | 0.0494 (12) | 0.0476 (12) | 0.0031 (10) | 0.0299 (11) | 0.0005 (9) |
| C16 | 0.0444 (11) | 0.0374 (10) | 0.0389 (10) | −0.0043 (8) | 0.0168 (8) | 0.0033 (8) |
| C17 | 0.0474 (12) | 0.0377 (10) | 0.0588 (13) | −0.0013 (9) | 0.0173 (10) | 0.0013 (9) |
| C18 | 0.0412 (12) | 0.0545 (13) | 0.0726 (15) | 0.0002 (10) | 0.0152 (11) | 0.0066 (11) |
| C19 | 0.0460 (12) | 0.0532 (13) | 0.0582 (13) | −0.0159 (10) | 0.0084 (10) | 0.0044 (10) |
| C20 | 0.0652 (14) | 0.0450 (12) | 0.0548 (13) | −0.0138 (11) | 0.0230 (11) | −0.0084 (9) |
| C21 | 0.0542 (12) | 0.0440 (11) | 0.0520 (12) | −0.0063 (9) | 0.0268 (10) | −0.0052 (9) |
| N1 | 0.0377 (8) | 0.0338 (8) | 0.0383 (8) | −0.0020 (6) | 0.0154 (7) | 0.0011 (6) |
| O1 | 0.0692 (10) | 0.0427 (8) | 0.0495 (8) | −0.0042 (7) | 0.0313 (7) | 0.0050 (6) |
| O2 | 0.1047 (14) | 0.0628 (11) | 0.0543 (10) | −0.0054 (10) | −0.0126 (9) | 0.0190 (8) |
| F1 | 0.0524 (8) | 0.0701 (9) | 0.1148 (12) | −0.0234 (7) | 0.0107 (8) | −0.0013 (8) |
| F2 | 0.0621 (9) | 0.1066 (12) | 0.0843 (10) | 0.0072 (8) | 0.0400 (8) | −0.0227 (8) |
| Cl1 | 0.1233 (6) | 0.0731 (4) | 0.0600 (4) | −0.0112 (4) | 0.0577 (4) | −0.0075 (3) |
| C1—N1 | 1.483 (2) | C10—C11 | 1.357 (3) |
| C1—C8 | 1.519 (3) | C10—H10 | 0.9300 |
| C1—C2 | 1.542 (2) | C11—F2 | 1.353 (2) |
| C1—H1 | 0.9800 | C11—C12 | 1.368 (3) |
| C2—C3 | 1.507 (3) | C12—C13 | 1.375 (3) |
| C2—C6 | 1.530 (3) | C12—H12 | 0.9300 |
| C2—C7 | 1.541 (3) | C13—H13 | 0.9300 |
| C3—O2 | 1.203 (2) | C14—O1 | 1.221 (2) |
| C3—C4 | 1.505 (3) | C14—N1 | 1.356 (2) |
| C4—C5 | 1.535 (3) | C14—C15 | 1.515 (3) |
| C4—H4A | 0.9700 | C15—Cl1 | 1.754 (2) |
| C4—H4B | 0.9700 | C15—H15A | 0.9700 |
| C5—N1 | 1.485 (2) | C15—H15B | 0.9700 |
| C5—C16 | 1.517 (2) | C16—C21 | 1.382 (3) |
| C5—H5 | 0.9800 | C16—C17 | 1.383 (3) |
| C6—H6A | 0.9600 | C17—C18 | 1.384 (3) |
| C6—H6B | 0.9600 | C17—H17 | 0.9300 |
| C6—H6C | 0.9600 | C18—C19 | 1.367 (3) |
| C7—H7A | 0.9600 | C18—H18 | 0.9300 |
| C7—H7B | 0.9600 | C19—F1 | 1.353 (2) |
| C7—H7C | 0.9600 | C19—C20 | 1.362 (3) |
| C8—C9 | 1.384 (3) | C20—C21 | 1.382 (3) |
| C8—C13 | 1.389 (3) | C20—H20 | 0.9300 |
| C9—C10 | 1.381 (3) | C21—H21 | 0.9300 |
| C9—H9 | 0.9300 | ||
| N1—C1—C8 | 110.21 (14) | C8—C9—H9 | 119.5 |
| N1—C1—C2 | 109.50 (14) | C11—C10—C9 | 119.07 (19) |
| C8—C1—C2 | 119.33 (16) | C11—C10—H10 | 120.5 |
| N1—C1—H1 | 105.6 | C9—C10—H10 | 120.5 |
| C8—C1—H1 | 105.6 | F2—C11—C10 | 118.9 (2) |
| C2—C1—H1 | 105.6 | F2—C11—C12 | 119.0 (2) |
| C3—C2—C6 | 111.25 (17) | C10—C11—C12 | 122.1 (2) |
| C3—C2—C7 | 105.53 (18) | C11—C12—C13 | 118.4 (2) |
| C6—C2—C7 | 109.02 (18) | C11—C12—H12 | 120.8 |
| C3—C2—C1 | 110.54 (15) | C13—C12—H12 | 120.8 |
| C6—C2—C1 | 111.49 (16) | C12—C13—C8 | 121.65 (18) |
| C7—C2—C1 | 108.80 (17) | C12—C13—H13 | 119.2 |
| O2—C3—C4 | 120.44 (19) | C8—C13—H13 | 119.2 |
| O2—C3—C2 | 122.40 (19) | O1—C14—N1 | 122.96 (17) |
| C4—C3—C2 | 117.15 (16) | O1—C14—C15 | 120.95 (17) |
| C3—C4—C5 | 118.07 (17) | N1—C14—C15 | 116.09 (16) |
| C3—C4—H4A | 107.8 | C14—C15—Cl1 | 112.00 (14) |
| C5—C4—H4A | 107.8 | C14—C15—H15A | 109.2 |
| C3—C4—H4B | 107.8 | Cl1—C15—H15A | 109.2 |
| C5—C4—H4B | 107.8 | C14—C15—H15B | 109.2 |
| H4A—C4—H4B | 107.1 | Cl1—C15—H15B | 109.2 |
| N1—C5—C16 | 113.80 (14) | H15A—C15—H15B | 107.9 |
| N1—C5—C4 | 111.60 (15) | C21—C16—C17 | 118.52 (18) |
| C16—C5—C4 | 107.94 (15) | C21—C16—C5 | 119.36 (17) |
| N1—C5—H5 | 107.8 | C17—C16—C5 | 121.83 (17) |
| C16—C5—H5 | 107.8 | C16—C17—C18 | 121.11 (19) |
| C4—C5—H5 | 107.8 | C16—C17—H17 | 119.4 |
| C2—C6—H6A | 109.5 | C18—C17—H17 | 119.4 |
| C2—C6—H6B | 109.5 | C19—C18—C17 | 118.1 (2) |
| H6A—C6—H6B | 109.5 | C19—C18—H18 | 121.0 |
| C2—C6—H6C | 109.5 | C17—C18—H18 | 121.0 |
| H6A—C6—H6C | 109.5 | F1—C19—C20 | 118.8 (2) |
| H6B—C6—H6C | 109.5 | F1—C19—C18 | 118.4 (2) |
| C2—C7—H7A | 109.5 | C20—C19—C18 | 122.8 (2) |
| C2—C7—H7B | 109.5 | C19—C20—C21 | 118.3 (2) |
| H7A—C7—H7B | 109.5 | C19—C20—H20 | 120.8 |
| C2—C7—H7C | 109.5 | C21—C20—H20 | 120.8 |
| H7A—C7—H7C | 109.5 | C20—C21—C16 | 121.1 (2) |
| H7B—C7—H7C | 109.5 | C20—C21—H21 | 119.4 |
| C9—C8—C13 | 117.70 (18) | C16—C21—H21 | 119.4 |
| C9—C8—C1 | 125.28 (17) | C14—N1—C1 | 117.35 (14) |
| C13—C8—C1 | 116.97 (16) | C14—N1—C5 | 122.27 (15) |
| C10—C9—C8 | 121.09 (19) | C1—N1—C5 | 119.95 (14) |
| C10—C9—H9 | 119.5 | ||
| N1—C1—C2—C3 | 58.3 (2) | C1—C8—C13—C12 | −177.07 (17) |
| C8—C1—C2—C3 | −70.0 (2) | O1—C14—C15—Cl1 | −12.3 (2) |
| N1—C1—C2—C6 | −177.45 (16) | N1—C14—C15—Cl1 | 168.29 (14) |
| C8—C1—C2—C6 | 54.3 (2) | N1—C5—C16—C21 | −135.35 (17) |
| N1—C1—C2—C7 | −57.2 (2) | C4—C5—C16—C21 | 100.2 (2) |
| C8—C1—C2—C7 | 174.54 (17) | N1—C5—C16—C17 | 50.9 (2) |
| C6—C2—C3—O2 | 31.2 (3) | C4—C5—C16—C17 | −73.6 (2) |
| C7—C2—C3—O2 | −86.9 (3) | C21—C16—C17—C18 | −2.4 (3) |
| C1—C2—C3—O2 | 155.6 (2) | C5—C16—C17—C18 | 171.43 (18) |
| C6—C2—C3—C4 | −147.7 (2) | C16—C17—C18—C19 | 0.4 (3) |
| C7—C2—C3—C4 | 94.2 (2) | C17—C18—C19—F1 | −175.83 (19) |
| C1—C2—C3—C4 | −23.3 (3) | C17—C18—C19—C20 | 2.2 (3) |
| O2—C3—C4—C5 | 157.1 (2) | F1—C19—C20—C21 | 175.26 (19) |
| C2—C3—C4—C5 | −23.9 (3) | C18—C19—C20—C21 | −2.8 (3) |
| C3—C4—C5—N1 | 35.1 (2) | C19—C20—C21—C16 | 0.7 (3) |
| C3—C4—C5—C16 | 160.89 (18) | C17—C16—C21—C20 | 1.8 (3) |
| N1—C1—C8—C9 | −105.5 (2) | C5—C16—C21—C20 | −172.16 (18) |
| C2—C1—C8—C9 | 22.4 (3) | O1—C14—N1—C1 | 6.3 (3) |
| N1—C1—C8—C13 | 72.05 (19) | C15—C14—N1—C1 | −174.27 (16) |
| C2—C1—C8—C13 | −160.01 (16) | O1—C14—N1—C5 | 178.74 (17) |
| C13—C8—C9—C10 | −0.9 (3) | C15—C14—N1—C5 | −1.8 (2) |
| C1—C8—C9—C10 | 176.67 (18) | C8—C1—N1—C14 | −103.14 (17) |
| C8—C9—C10—C11 | 0.6 (3) | C2—C1—N1—C14 | 123.70 (17) |
| C9—C10—C11—F2 | 178.63 (18) | C8—C1—N1—C5 | 84.23 (18) |
| C9—C10—C11—C12 | 0.0 (3) | C2—C1—N1—C5 | −48.9 (2) |
| F2—C11—C12—C13 | −178.82 (18) | C16—C5—N1—C14 | 67.7 (2) |
| C10—C11—C12—C13 | −0.2 (3) | C4—C5—N1—C14 | −169.80 (16) |
| C11—C12—C13—C8 | −0.2 (3) | C16—C5—N1—C1 | −120.01 (17) |
| C9—C8—C13—C12 | 0.7 (3) | C4—C5—N1—C1 | 2.4 (2) |
| H··· | ||||
| C5—H5···O1i | 0.98 | 2.50 | 3.453 (2) | 165 |
| C15—H15 | 0.97 | 2.46 | 3.429 (3) | 174 |
| C20—H20···O2ii | 0.93 | 2.45 | 3.298 (3) | 151 |
| C10—H10··· | 0.93 | 2.66 | 3.499 (2) | 151 |
| C17—H17··· | 0.93 | 2.85 | 3.771 (2) | 170 |