Literature DB >> 21577900

3,3-Dimethyl-cis-2,6-di-p-tolyl-piperidin-4-one.

P Gayathri, S S Ilango, S Ponnuswamy, A Thiruvalluvar, R J Butcher.   

Abstract

In the title mol-ecule, C(21)H(25)NO, the piperidine ring adopts a chair conformation. The benzene rings and one of the methyl groups attached to the piperidine ring have equatorial orientations. The dihedral angle between the two benzene rings is 72.53 (9)°. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds. Weak C-H⋯π inter-actions involving the benzene rings are also present in the crystal structure.

Entities:  

Year:  2009        PMID: 21577900      PMCID: PMC2970464          DOI: 10.1107/S160053680903579X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related crystal structures, see: Gayathri et al. (2008 ▶); Ilango et al. (2008 ▶). For biological activities of piperidones, see: Aridoss et al. (2008 ▶). For the synthesis, see: Noller and Baliah (1948 ▶). For the stereochemistry and ring conformation of piperidin-4-ones and their derivatives, see: Ponnuswamy et al. (2002 ▶).

Experimental

Crystal data

C21H25NO M = 307.42 Orthorhombic, a = 12.9576 (3) Å b = 22.6153 (5) Å c = 5.9600 (1) Å V = 1746.52 (6) Å3 Z = 4 Cu Kα radiation μ = 0.55 mm−1 T = 110 K 0.51 × 0.34 × 0.12 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Ruby Gemini detector Absorption correction: multi-scan (CrysAlis Pro; Oxford Diffraction, 2009 ▶) T min = 0.665, T max = 1.000 4198 measured reflections 1914 independent reflections 1859 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.04 1914 reflections 216 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis Pro (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis Pro; data reduction: CrysAlis Pro; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680903579X/sj2644sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680903579X/sj2644Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H25NODx = 1.169 Mg m3
Mr = 307.42Melting point: 389(1) K
Orthorhombic, Pna21Cu Kα radiation, λ = 1.54184 Å
Hall symbol: P 2c -2nCell parameters from 3875 reflections
a = 12.9576 (3) Åθ = 5.2–74.0°
b = 22.6153 (5) ŵ = 0.55 mm1
c = 5.9600 (1) ÅT = 110 K
V = 1746.52 (6) Å3Rectangular-plate, colourless
Z = 40.51 × 0.34 × 0.12 mm
F(000) = 664
Oxford Diffraction Xcalibur diffractometer with a Ruby Gemini detector1914 independent reflections
Radiation source: fine-focus sealed tube1859 reflections with I > 2σ(I)
graphiteRint = 0.018
Detector resolution: 10.5081 pixels mm-1θmax = 74.1°, θmin = 5.2°
ω scansh = −16→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −27→16
Tmin = 0.665, Tmax = 1.000l = −6→7
4198 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0807P)2 + 0.2385P] where P = (Fo2 + 2Fc2)/3
1914 reflections(Δ/σ)max = 0.001
216 parametersΔρmax = 0.26 e Å3
1 restraintΔρmin = −0.24 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.56853 (10)0.24999 (6)−0.0992 (3)0.0283 (4)
N10.27975 (12)0.27483 (7)0.1089 (3)0.0224 (4)
C20.31792 (13)0.21482 (8)0.0700 (3)0.0211 (5)
C30.43464 (13)0.21033 (8)0.1375 (3)0.0231 (5)
C40.49127 (14)0.25941 (8)0.0097 (4)0.0239 (5)
C50.44461 (14)0.32042 (8)0.0236 (4)0.0281 (5)
C60.32911 (14)0.31839 (8)−0.0373 (3)0.0236 (5)
C120.04818 (17)0.04740 (9)0.5387 (4)0.0352 (6)
C160.11057 (17)0.54217 (9)0.0765 (4)0.0342 (6)
C210.24918 (13)0.17115 (8)0.1927 (3)0.0213 (5)
C220.22517 (14)0.11643 (8)0.0988 (4)0.0242 (5)
C230.16130 (14)0.07669 (8)0.2094 (4)0.0259 (5)
C240.11876 (14)0.09021 (8)0.4177 (4)0.0259 (5)
C250.14229 (15)0.14503 (8)0.5111 (4)0.0259 (5)
C260.20649 (14)0.18499 (8)0.4018 (4)0.0230 (5)
C310.45077 (15)0.22090 (9)0.3902 (4)0.0286 (5)
C320.47915 (15)0.15041 (8)0.0708 (4)0.0295 (6)
C610.27612 (14)0.37750 (8)−0.0106 (3)0.0234 (5)
C620.27803 (15)0.40730 (9)0.1934 (4)0.0281 (5)
C630.22477 (17)0.46020 (9)0.2216 (4)0.0301 (6)
C640.16765 (15)0.48444 (8)0.0463 (4)0.0278 (5)
C650.16612 (16)0.45467 (9)−0.1565 (4)0.0285 (5)
C660.21927 (15)0.40169 (9)−0.1854 (4)0.0275 (5)
H10.216 (2)0.2763 (10)0.077 (5)0.023 (6)*
H20.312460.20644−0.094290.0253*
H5A0.481150.34728−0.080760.0338*
H5B0.452940.336100.177640.0338*
H60.321930.30512−0.196550.0283*
H12A−0.022400.051890.482130.0528*
H12B0.049470.055770.700010.0528*
H12C0.071800.006820.512260.0528*
H16A0.050830.54316−0.024330.0513*
H16B0.156790.575180.041060.0513*
H16C0.087060.545610.232200.0513*
H220.253010.10614−0.043350.0290*
H230.146360.039630.141730.0311*
H250.113840.155360.652670.0311*
H260.221490.222010.469700.0276*
H31A0.524720.224610.421680.0428*
H31B0.422470.187470.474860.0428*
H31C0.415380.257330.434960.0428*
H32A0.551890.148460.115190.0441*
H32B0.473530.14536−0.092010.0441*
H32C0.440600.118910.146540.0441*
H620.316220.391320.315230.0337*
H630.227390.480020.362020.0361*
H650.128080.47069−0.278480.0342*
H660.216590.38193−0.325910.0330*
U11U22U33U12U13U23
O40.0233 (6)0.0338 (7)0.0279 (7)0.0004 (5)0.0018 (6)0.0032 (6)
N10.0197 (7)0.0216 (8)0.0258 (8)−0.0004 (5)0.0003 (7)0.0018 (7)
C20.0223 (8)0.0218 (8)0.0192 (9)−0.0003 (6)−0.0006 (7)−0.0001 (7)
C30.0201 (8)0.0253 (9)0.0238 (10)0.0003 (7)−0.0005 (7)0.0015 (8)
C40.0215 (8)0.0270 (8)0.0233 (9)−0.0013 (7)−0.0022 (8)−0.0006 (8)
C50.0240 (8)0.0234 (9)0.0370 (11)−0.0022 (7)0.0040 (8)0.0027 (8)
C60.0256 (9)0.0220 (8)0.0231 (9)0.0003 (7)0.0014 (7)0.0001 (7)
C120.0374 (10)0.0292 (9)0.0390 (12)−0.0069 (8)0.0044 (10)0.0088 (10)
C160.0349 (10)0.0258 (9)0.0419 (13)0.0039 (7)0.0066 (10)0.0033 (9)
C210.0199 (8)0.0218 (8)0.0222 (9)0.0011 (6)−0.0017 (7)0.0022 (8)
C220.0247 (8)0.0249 (9)0.0229 (9)0.0009 (6)−0.0008 (8)−0.0023 (8)
C230.0285 (8)0.0196 (8)0.0297 (10)−0.0008 (7)−0.0045 (8)−0.0002 (8)
C240.0234 (8)0.0242 (8)0.0302 (10)−0.0009 (7)−0.0015 (8)0.0065 (8)
C250.0260 (9)0.0284 (9)0.0232 (9)0.0017 (7)0.0017 (8)0.0012 (8)
C260.0238 (8)0.0207 (8)0.0245 (9)0.0006 (6)−0.0002 (8)−0.0011 (8)
C310.0261 (9)0.0365 (10)0.0232 (9)−0.0027 (8)−0.0045 (8)0.0023 (9)
C320.0263 (9)0.0251 (9)0.0370 (11)0.0023 (7)0.0033 (8)0.0027 (9)
C610.0242 (8)0.0218 (8)0.0242 (10)−0.0022 (7)0.0047 (8)0.0032 (8)
C620.0330 (9)0.0271 (9)0.0243 (10)0.0007 (7)−0.0023 (9)0.0037 (9)
C630.0388 (10)0.0257 (9)0.0257 (10)−0.0011 (8)0.0019 (9)−0.0023 (8)
C640.0260 (8)0.0229 (9)0.0344 (11)−0.0018 (7)0.0069 (8)0.0037 (9)
C650.0301 (9)0.0284 (9)0.0270 (10)0.0000 (7)0.0009 (8)0.0085 (8)
C660.0315 (10)0.0284 (9)0.0226 (9)−0.0016 (8)0.0013 (8)0.0008 (8)
O4—C41.212 (2)C65—C661.393 (3)
N1—C21.463 (2)C2—H21.0000
N1—C61.463 (2)C5—H5A0.9900
N1—H10.85 (3)C5—H5B0.9900
C2—C211.518 (2)C6—H61.0000
C2—C31.568 (2)C12—H12A0.9800
C3—C41.533 (3)C12—H12B0.9800
C3—C311.539 (3)C12—H12C0.9800
C3—C321.525 (3)C16—H16A0.9800
C4—C51.509 (3)C16—H16B0.9800
C5—C61.541 (3)C16—H16C0.9800
C6—C611.511 (3)C22—H220.9500
C12—C241.515 (3)C23—H230.9500
C16—C641.511 (3)C25—H250.9500
C21—C221.393 (3)C26—H260.9500
C21—C261.399 (3)C31—H31A0.9800
C22—C231.388 (3)C31—H31B0.9800
C23—C241.392 (3)C31—H31C0.9800
C24—C251.393 (3)C32—H32A0.9800
C25—C261.390 (3)C32—H32B0.9800
C61—C661.388 (3)C32—H32C0.9800
C61—C621.390 (3)C62—H620.9500
C62—C631.391 (3)C63—H630.9500
C63—C641.393 (3)C65—H650.9500
C64—C651.384 (3)C66—H660.9500
O4···C21i3.419 (2)H5B···C24i3.0700
O4···N1i3.057 (2)H6···H22.3200
O4···H32B2.6700H6···H662.3400
O4···H32A2.6400H12B···H252.4200
O4···H1i2.26 (3)H12C···H232.5200
O4···H25ii2.6700H16A···H652.4500
N1···O4iii3.057 (2)H16B···C23vii3.0800
N1···H31C2.6500H16B···C24vii3.0200
N1···H622.9500H16B···C25vii3.0500
N1···H262.5700H16C···H632.4700
C21···O4iii3.419 (2)H22···H22.4100
C22···C323.384 (3)H23···H12C2.5200
C26···C313.269 (3)H25···H12B2.4200
C31···C263.269 (3)H25···O4viii2.6700
C32···C223.384 (3)H25···H5Aviii2.3400
C4···H1i3.05 (3)H26···N12.5700
C5···H622.8900H26···C313.0100
C5···H31C2.8600H31A···H32A2.5400
C21···H32C2.7600H31B···C212.8300
C21···H31B2.8300H31B···C262.8300
C22···H32C2.8100H31B···H32C2.5100
C23···H16Biv3.0800H31C···N12.6500
C24···H5Biii3.0700H31C···C52.8600
C24···H16Biv3.0200H31C···H5B2.4000
C25···H16Biv3.0500H32A···O42.6400
C26···H12.83 (3)H32A···H31A2.5400
C26···H31B2.8300H32A···C61i3.0600
C31···H5B2.9000H32A···C66i3.0300
C31···H263.0100H32B···O42.6700
C61···H32Aiii3.0600H32B···H22.5000
C62···H5B2.7800H32C···C212.7600
C62···H66v3.0300H32C···C222.8100
C65···H63vi3.0300H32C···H31B2.5100
C66···H32Aiii3.0300H62···N12.9500
H1···C262.83 (3)H62···C52.8900
H1···O4iii2.26 (3)H62···H5B2.3200
H1···C4iii3.05 (3)H62···H66v2.5100
H2···H62.3200H63···C65v3.0300
H2···H222.4100H63···H16C2.4700
H2···H32B2.5000H63···H65v2.5100
H5A···H25ii2.3400H65···H16A2.4500
H5B···C312.9000H65···H63vi2.5100
H5B···C622.7800H66···C62vi3.0300
H5B···H31C2.4000H66···H62.3400
H5B···H622.3200H66···H62vi2.5100
C2—N1—C6112.50 (15)C6—C5—H5B110.00
C6—N1—H1105.4 (18)H5A—C5—H5B108.00
C2—N1—H1109.3 (16)N1—C6—H6109.00
N1—C2—C21109.20 (14)C5—C6—H6109.00
N1—C2—C3110.21 (14)C61—C6—H6109.00
C3—C2—C21113.59 (14)C24—C12—H12A109.00
C2—C3—C31111.83 (14)C24—C12—H12B109.00
C2—C3—C4106.69 (14)C24—C12—H12C109.00
C4—C3—C32109.43 (15)H12A—C12—H12B109.00
C31—C3—C32109.98 (16)H12A—C12—H12C109.00
C4—C3—C31107.98 (16)H12B—C12—H12C109.00
C2—C3—C32110.81 (15)C64—C16—H16A109.00
O4—C4—C5121.41 (18)C64—C16—H16B109.00
O4—C4—C3122.29 (16)C64—C16—H16C109.00
C3—C4—C5116.30 (16)H16A—C16—H16B109.00
C4—C5—C6110.43 (15)H16A—C16—H16C109.00
N1—C6—C5107.73 (15)H16B—C16—H16C109.00
C5—C6—C61112.97 (15)C21—C22—H22119.00
N1—C6—C61109.54 (15)C23—C22—H22119.00
C2—C21—C26121.04 (16)C22—C23—H23119.00
C2—C21—C22121.03 (17)C24—C23—H23119.00
C22—C21—C26117.92 (17)C24—C25—H25119.00
C21—C22—C23121.2 (2)C26—C25—H25119.00
C22—C23—C24121.15 (18)C21—C26—H26120.00
C23—C24—C25117.72 (18)C25—C26—H26120.00
C12—C24—C25120.7 (2)C3—C31—H31A109.00
C12—C24—C23121.55 (17)C3—C31—H31B109.00
C24—C25—C26121.5 (2)C3—C31—H31C109.00
C21—C26—C25120.57 (18)H31A—C31—H31B109.00
C62—C61—C66118.34 (18)H31A—C31—H31C109.00
C6—C61—C62120.85 (16)H31B—C31—H31C109.00
C6—C61—C66120.71 (17)C3—C32—H32A109.00
C61—C62—C63120.9 (2)C3—C32—H32B109.00
C62—C63—C64120.8 (2)C3—C32—H32C109.00
C16—C64—C65121.2 (2)H32A—C32—H32B109.00
C16—C64—C63120.7 (2)H32A—C32—H32C109.00
C63—C64—C65118.12 (18)H32B—C32—H32C109.00
C64—C65—C66121.3 (2)C61—C62—H62120.00
C61—C66—C65120.6 (2)C63—C62—H62120.00
N1—C2—H2108.00C62—C63—H63120.00
C3—C2—H2108.00C64—C63—H63120.00
C21—C2—H2108.00C64—C65—H65119.00
C4—C5—H5A110.00C66—C65—H65119.00
C4—C5—H5B110.00C61—C66—H66120.00
C6—C5—H5A110.00C65—C66—H66120.00
C6—N1—C2—C365.65 (19)N1—C6—C61—C6263.7 (2)
C6—N1—C2—C21−168.91 (14)N1—C6—C61—C66−112.47 (19)
C2—N1—C6—C5−64.42 (19)C5—C6—C61—C62−56.4 (2)
C2—N1—C6—C61172.34 (14)C5—C6—C61—C66127.44 (19)
N1—C2—C3—C4−53.85 (19)C2—C21—C22—C23−179.21 (17)
N1—C2—C3—C3164.01 (19)C26—C21—C22—C23−0.3 (3)
N1—C2—C3—C32−172.90 (16)C2—C21—C26—C25178.97 (17)
C21—C2—C3—C4−176.75 (15)C22—C21—C26—C250.1 (3)
C21—C2—C3—C31−58.9 (2)C21—C22—C23—C240.2 (3)
C21—C2—C3—C3264.2 (2)C22—C23—C24—C12179.41 (19)
N1—C2—C21—C22142.56 (17)C22—C23—C24—C250.1 (3)
N1—C2—C21—C26−36.3 (2)C12—C24—C25—C26−179.65 (19)
C3—C2—C21—C22−94.0 (2)C23—C24—C25—C26−0.4 (3)
C3—C2—C21—C2687.2 (2)C24—C25—C26—C210.3 (3)
C2—C3—C4—O4−129.7 (2)C6—C61—C62—C63−176.61 (18)
C2—C3—C4—C549.4 (2)C66—C61—C62—C63−0.3 (3)
C31—C3—C4—O4109.9 (2)C6—C61—C66—C65176.65 (18)
C31—C3—C4—C5−71.0 (2)C62—C61—C66—C650.4 (3)
C32—C3—C4—O4−9.8 (3)C61—C62—C63—C640.4 (3)
C32—C3—C4—C5169.34 (18)C62—C63—C64—C16−179.47 (19)
O4—C4—C5—C6127.7 (2)C62—C63—C64—C65−0.5 (3)
C3—C4—C5—C6−51.4 (2)C16—C64—C65—C66179.51 (19)
C4—C5—C6—N154.8 (2)C63—C64—C65—C660.5 (3)
C4—C5—C6—C61175.93 (17)C64—C65—C66—C61−0.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O4iii0.85 (3)2.26 (3)3.057 (2)157 (2)
C16—H16B···Cg1vii0.982.803.704 (2)154
C32—H32A···Cg2i0.982.903.659 (2)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O4i0.85 (3)2.26 (3)3.057 (2)157 (2)
C16—H16BCg1ii0.982.803.704 (2)154
C32—H32ACg2iii0.982.903.659 (2)135

Symmetry codes: (i) ; (ii) ; (iii) . Cg1 and Cg2 are the centroids of the C21—C26 and C61—C66 rings, respectively.

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The preparation of some piperidine derivatives by the Mannich reaction.

Authors:  C R NOLLER; V BALIAH
Journal:  J Am Chem Soc       Date:  1948-11       Impact factor: 15.419

3.  A facile synthesis, antibacterial, and antitubercular studies of some piperidin-4-one and tetrahydropyridine derivatives.

Authors:  Gopalakrishnan Aridoss; Shanmugasundaram Amirthaganesan; Nanjundan Ashok Kumar; Jong Tae Kim; Kwon Taek Lim; Senthamaraikannan Kabilan; Yeon Tae Jeong
Journal:  Bioorg Med Chem Lett       Date:  2008-10-14       Impact factor: 2.823

4.  r-2,c-6-Bis(4-chloro-phen-yl)-c-3,t-3-dimethyl-piperidin-4-one.

Authors:  S S Ilango; S Ponnuswamy; P Gayathri; A Thiruvalluvar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-13

5.  r-2,c-6-Bis(4-chloro-phen-yl)-t-3-isopropyl-1-nitro-sopiperidin-4-one.

Authors:  P Gayathri; A Thiruvalluvar; A Manimekalai; S Sivakumar; R J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  1 in total

1.  Crystal structures of three 3-chloro-3-methyl-2,6-di-aryl-piperidin-4-ones.

Authors:  R Arulraj; S Sivakumar; Manpreet Kaur; A Thiruvalluvar; Jerry P Jasinski
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-01-06
  1 in total

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