Literature DB >> 21581184

Dibromido(di-2-pyridylamine-κN,N')mercury(II).

Khadijeh Kalateh, Ali Norouzi, Amin Ebadi, Roya Ahmadi, Vahid Amani.   

Abstract

In the mol-ecule of the title compound, [HgBr(2)(C(10)H(9)N(3))], the Hg(II) atom is four-coordinated in a distorted tetra-hedral configuration by two N atoms from the chelating di-2-pyridylamine ligand and by two Br atoms. In the crystal structure, inter-molecular N-H⋯Br hydrogen bonds link the mol-ecules into centrosymmetric dimers. There are π-π contacts between the pyridine rings [centroid-centroid distances = 3.9662 (5) and 3.9321 (4) Å]. There also exists a C-H⋯π contact between the pyridine CH group and a pyridine ring.

Entities:  

Year:  2008        PMID: 21581184      PMCID: PMC2960074          DOI: 10.1107/S1600536808038129

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Ahmadi et al. (2008 ▶); Kalateh et al. (2008 ▶); Khavasi et al. (2008 ▶); Tadayon Pour et al. (2008 ▶); Yousefi, Rashidi Vahid et al. (2008 ▶); Yousefi, Tadayon Pour et al. (2008 ▶). For related structures, see: Xie et al. (2004 ▶); Hughes et al. (1985 ▶).

Experimental

Crystal data

[HgBr2(C10n class="Species">H9N3)] M = 531.59 Triclinic, a = 8.1284 (16) Å b = 8.7645 (18) Å c = 9.912 (2) Å α = 113.45 (3)° β = 98.41 (3)° γ = 97.79 (3)° V = 626.1 (3) Å3 Z = 2 Mo Kα radiation μ = 18.65 mm−1 T = 120 (2) K 0.40 × 0.35 × 0.25 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: numerical (shape of crystal determined optically) (X-SHAPE and X-RED; Stoe & Cie, 2005 ▶)T min = 0.016, T max = 0.080 7839 measured reflections 3350 independent reflections 3234 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.140 S = 1.15 3350 reflections 145 parameters H-atom parameters constrained Δρmax = 4.33 e Å−3 Δρmin = −6.54 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808038129/hk2575sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808038129/hk2575Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[HgBr2(C10H9N3)]Z = 2
Mr = 531.59F000 = 480
Triclinic, P1Dx = 2.820 Mg m3
Hall symbol: -P 1Mo Kα radiation λ = 0.71073 Å
a = 8.1284 (16) ÅCell parameters from 1657 reflections
b = 8.7645 (18) Åθ = 2.3–29.2º
c = 9.912 (2) ŵ = 18.65 mm1
α = 113.45 (3)ºT = 120 (2) K
β = 98.41 (3)ºPrism, colorless
γ = 97.79 (3)º0.40 × 0.35 × 0.25 mm
V = 626.1 (3) Å3
Bruker SMART CCD area-detector diffractometer3350 independent reflections
Radiation source: fine-focus sealed tube3234 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.087
T = 120(2) Kθmax = 29.2º
φ and ω scansθmin = 2.3º
Absorption correction: numerical(shape of crystal determined optically)h = −11→11
Tmin = 0.016, Tmax = 0.080k = −11→10
7839 measured reflectionsl = −12→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.053H-atom parameters constrained
wR(F2) = 0.140  w = 1/[σ2(Fo2) + (0.0882P)2 + 2.3955P] where P = (Fo2 + 2Fc2)/3
S = 1.15(Δ/σ)max = 0.059
3350 reflectionsΔρmax = 4.33 e Å3
145 parametersΔρmin = −6.54 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Hg10.28140 (3)0.22806 (4)0.84793 (3)0.02226 (15)
Br10.03376 (10)0.29535 (11)0.71493 (10)0.0259 (2)
Br20.58403 (10)0.34148 (10)0.83842 (9)0.0219 (2)
N10.2053 (9)0.1755 (9)1.0425 (8)0.0195 (12)
N20.3018 (9)−0.0818 (8)0.9915 (8)0.0190 (12)
H2A0.3426−0.13621.03950.023*
N30.3006 (9)−0.0591 (8)0.7601 (8)0.0192 (12)
C10.1347 (11)0.2988 (10)1.1369 (11)0.0239 (15)
H10.10980.38451.10960.029*
C20.0991 (11)0.3023 (11)1.2678 (11)0.0248 (16)
H20.05160.38811.32880.030*
C30.1363 (11)0.1728 (11)1.3080 (10)0.0247 (15)
H30.11510.17271.39770.030*
C40.2037 (11)0.0462 (11)1.2157 (10)0.0225 (14)
H40.2279−0.04121.24070.027*
C50.2355 (9)0.0519 (10)1.0815 (9)0.0178 (13)
C60.3175 (9)−0.1477 (10)0.8430 (9)0.0172 (13)
C70.3535 (10)−0.3113 (10)0.7834 (10)0.0215 (14)
H70.3679−0.36930.84370.026*
C80.3671 (11)−0.3850 (11)0.6355 (10)0.0249 (15)
H80.3886−0.49400.59440.030*
C90.3485 (12)−0.2952 (11)0.5481 (10)0.0262 (16)
H90.3575−0.34140.44790.031*
C100.3158 (11)−0.1340 (12)0.6165 (10)0.0248 (16)
H100.3034−0.07310.55870.030*
U11U22U33U12U13U23
Hg10.0242 (2)0.0212 (2)0.0290 (2)0.00845 (13)0.00573 (13)0.01720 (14)
Br10.0239 (4)0.0253 (4)0.0341 (4)0.0070 (3)0.0012 (3)0.0194 (3)
Br20.0237 (4)0.0208 (4)0.0267 (4)0.0057 (3)0.0061 (3)0.0151 (3)
N10.023 (3)0.016 (3)0.019 (3)0.006 (2)0.001 (2)0.008 (2)
N20.026 (3)0.015 (3)0.022 (3)0.007 (2)0.004 (2)0.013 (2)
N30.024 (3)0.016 (3)0.018 (3)0.005 (2)0.002 (2)0.009 (2)
C10.025 (4)0.015 (3)0.032 (4)0.005 (3)0.003 (3)0.011 (3)
C20.024 (3)0.020 (3)0.030 (4)0.007 (3)0.007 (3)0.009 (3)
C30.029 (4)0.024 (4)0.022 (3)0.006 (3)0.009 (3)0.010 (3)
C40.026 (3)0.021 (3)0.024 (4)0.005 (3)0.003 (3)0.012 (3)
C50.014 (3)0.017 (3)0.020 (3)0.001 (2)0.002 (2)0.007 (3)
C60.013 (3)0.016 (3)0.020 (3)−0.002 (2)−0.002 (2)0.009 (3)
C70.024 (3)0.017 (3)0.024 (4)0.004 (3)0.004 (3)0.010 (3)
C80.027 (4)0.022 (4)0.023 (4)0.005 (3)0.002 (3)0.008 (3)
C90.037 (4)0.021 (4)0.017 (3)0.005 (3)0.003 (3)0.006 (3)
C100.030 (4)0.029 (4)0.020 (3)0.008 (3)0.004 (3)0.015 (3)
Br1—Hg12.5106 (11)C5—N11.327 (10)
Br2—Hg12.5549 (11)C5—N21.393 (10)
N1—Hg12.301 (7)C6—N31.342 (10)
N2—H2A0.8600C6—N21.384 (10)
N3—Hg12.350 (7)C6—C71.408 (11)
C1—C21.360 (13)C7—C81.376 (12)
C1—N11.376 (11)C7—H70.9300
C1—H10.9300C8—C91.389 (13)
C2—C31.398 (13)C8—H80.9300
C2—H20.9300C9—C101.385 (12)
C3—C41.368 (12)C9—H90.9300
C3—H30.9300C10—N31.342 (11)
C4—C51.410 (11)C10—H100.9300
C4—H40.9300
N1—Hg1—N381.1 (2)C2—C3—H3119.9
N1—Hg1—Br1109.13 (17)C3—C4—C5118.2 (8)
N3—Hg1—Br1117.16 (17)C3—C4—H4120.9
N1—Hg1—Br2125.41 (17)C5—C4—H4120.9
N3—Hg1—Br296.23 (18)N1—C5—N2121.7 (7)
Br1—Hg1—Br2119.68 (3)N1—C5—C4122.9 (7)
C1—N1—Hg1114.3 (5)N2—C5—C4115.4 (7)
C5—N1—Hg1128.2 (6)N3—C6—N2121.6 (7)
C5—N1—C1117.2 (7)N3—C6—C7121.6 (7)
C6—N2—C5135.0 (7)N2—C6—C7116.9 (7)
C6—N2—H2A112.5C8—C7—C6119.6 (8)
C5—N2—H2A112.5C8—C7—H7120.2
C6—N3—Hg1126.5 (5)C6—C7—H7120.2
C10—N3—Hg1115.6 (6)C7—C8—C9119.4 (8)
C10—N3—C6117.4 (7)C7—C8—H8120.3
C2—C1—N1123.6 (8)C9—C8—H8120.3
C2—C1—H1118.1C8—C9—C10117.2 (8)
N1—C1—H1118.3C8—C9—H9121.4
C1—C2—C3117.9 (8)C10—C9—H9121.4
C1—C2—H2121.0N3—C10—C9124.8 (8)
C3—C2—H2121.1N3—C10—H10117.5
C4—C3—C2120.2 (8)C9—C10—H10117.7
C4—C3—H3120.0
C1—N1—Hg1—N3−166.6 (6)C6—C7—C8—C91.3 (12)
C5—N1—Hg1—N320.2 (6)C7—C8—C9—C10−0.3 (13)
C1—N1—Hg1—Br1−50.8 (6)C8—C9—C10—N3−0.1 (14)
C5—N1—Hg1—Br1136.0 (6)N2—C5—N1—C1178.0 (7)
C1—N1—Hg1—Br2102.0 (5)C4—C5—N1—C1−2.2 (11)
C5—N1—Hg1—Br2−71.1 (7)N2—C5—N1—Hg1−9.0 (10)
C10—N3—Hg1—N1168.0 (6)C4—C5—N1—Hg1170.8 (6)
C6—N3—Hg1—N1−20.2 (6)C2—C1—N1—C51.8 (12)
C6—N3—Hg1—Br1−127.2 (6)C2—C1—N1—Hg1−172.2 (7)
C10—N3—Hg1—Br161.0 (6)N3—C6—N2—C516.3 (13)
C6—N3—Hg1—Br2104.8 (6)C7—C6—N2—C5−164.2 (8)
C10—N3—Hg1—Br2−67.0 (6)N1—C5—N2—C6−16.8 (13)
N1—C1—C2—C3−0.2 (13)C4—C5—N2—C6163.3 (8)
C1—C2—C3—C4−1.0 (13)C9—C10—N3—C6−0.4 (13)
C2—C3—C4—C50.6 (12)C9—C10—N3—Hg1172.2 (7)
C3—C4—C5—N11.0 (12)N2—C6—N3—C10−179.2 (7)
C3—C4—C5—N2−179.1 (7)C7—C6—N3—C101.4 (11)
N3—C6—C7—C8−1.8 (11)N2—C6—N3—Hg19.2 (10)
N2—C6—C7—C8178.7 (7)C7—C6—N3—Hg1−170.3 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Br2i0.862.623.472 (3)170
C2—H2···Cg3ii0.933.203.587 (3)107
Br1—Hg12.5106 (11)
Br2—Hg12.5549 (11)
N1—Hg12.301 (7)
N3—Hg12.350 (7)
N1—Hg1—N381.1 (2)
N1—Hg1—Br1109.13 (17)
N3—Hg1—Br1117.16 (17)
N1—Hg1—Br2125.41 (17)
N3—Hg1—Br296.23 (18)
Br1—Hg1—Br2119.68 (3)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯Br2i0.862.623.472 (3)170
C2—H2⋯Cg3ii0.933.203.587 (3)107

Symmetry codes: (i) ; (ii) . Cg3 is the centroid of the N3/C6–C10 ring.

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Di-μ-bromido-bis-[bromido(4,4'-dimethyl-2,2'-bipyridine-κN,N')mercury(II)].

Authors:  Khadijeh Kalateh; Amin Ebadi; Roya Ahmadi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-15

3.  (4,7-Diphenyl-1,10-phenanthroline-κN,N')diiodidomercury(II).

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4.  Dichlorido(6-methyl-2,2'-bipyridine-κN,N')mercury(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-15

5.  (5,5'-Dimethyl-2,2'-bipyridine-κN,N')diiodidomercury(II).

Authors:  Nasim Tadayon Pour; Amin Ebadi; Anita Abedi; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-20

6.  (4,4'-Dimethyl-2,2'-bipyridine-κN,N')diiodidomercury(II).

Authors:  Mohammad Yousefi; Nasim Tadayon Pour; Vahid Amani; Hamid Reza Khavasi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-13
  6 in total
  6 in total

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2.  Dibromido(2,9-dimethyl-1,10-phenanthroline-κN,N')mercury(II).

Authors:  Robabeh Alizadeh; Amene Heidari; Roya Ahmadi; Vahid Amani
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-02

3.  (2,9-Dimethyl-4,7-diphenyl-1,10-phen-anthroline-κN,N')bis-(thio-cyanato-κS)mercury(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-24

4.  Dichlorido(2,9-dimethyl-4,7-diphenyl-1,10-phenanthroline-κN,N')mercury(II) acetonitrile hemisolvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-01

5.  Dibromido(2,2'-dimethyl-4,4'-bi-1,3-thia-zole-κN,N')mercury(II).

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15

6.  Trichlorido(dimethyl sulfoxide-κO)(di-2-pyridyl-amine-κ(2)N,N')indium(III).

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