| Literature DB >> 21581184 |
Khadijeh Kalateh, Ali Norouzi, Amin Ebadi, Roya Ahmadi, Vahid Amani.
Abstract
In the mol-ecule of the title compound, [HgBr(2)(C(10)H(9)N(3))], the Hg(II) atom is four-coordinated in a distorted tetra-hedral configuration by two N atoms from the chelating di-2-pyridylamine ligand and by two Br atoms. In the crystal structure, inter-molecular N-H⋯Br hydrogen bonds link the mol-ecules into centrosymmetric dimers. There are π-π contacts between the pyridine rings [centroid-centroid distances = 3.9662 (5) and 3.9321 (4) Å]. There also exists a C-H⋯π contact between the pyridine CH group and a pyridine ring.Entities:
Year: 2008 PMID: 21581184 PMCID: PMC2960074 DOI: 10.1107/S1600536808038129
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [HgBr2(C10H9N3)] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1657 reflections | |
| θ = 2.3–29.2º | |
| µ = 18.65 mm−1 | |
| α = 113.45 (3)º | |
| β = 98.41 (3)º | Prism, colorless |
| γ = 97.79 (3)º | 0.40 × 0.35 × 0.25 mm |
| Bruker SMART CCD area-detector diffractometer | 3350 independent reflections |
| Radiation source: fine-focus sealed tube | 3234 reflections with |
| Monochromator: graphite | |
| θmax = 29.2º | |
| φ and ω scans | θmin = 2.3º |
| Absorption correction: numerical(shape of crystal determined optically) | |
| 7839 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max = 0.059 | |
| 3350 reflections | Δρmax = 4.33 e Å−3 |
| 145 parameters | Δρmin = −6.54 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Hg1 | 0.28140 (3) | 0.22806 (4) | 0.84793 (3) | 0.02226 (15) | |
| Br1 | 0.03376 (10) | 0.29535 (11) | 0.71493 (10) | 0.0259 (2) | |
| Br2 | 0.58403 (10) | 0.34148 (10) | 0.83842 (9) | 0.0219 (2) | |
| N1 | 0.2053 (9) | 0.1755 (9) | 1.0425 (8) | 0.0195 (12) | |
| N2 | 0.3018 (9) | −0.0818 (8) | 0.9915 (8) | 0.0190 (12) | |
| H2A | 0.3426 | −0.1362 | 1.0395 | 0.023* | |
| N3 | 0.3006 (9) | −0.0591 (8) | 0.7601 (8) | 0.0192 (12) | |
| C1 | 0.1347 (11) | 0.2988 (10) | 1.1369 (11) | 0.0239 (15) | |
| H1 | 0.1098 | 0.3845 | 1.1096 | 0.029* | |
| C2 | 0.0991 (11) | 0.3023 (11) | 1.2678 (11) | 0.0248 (16) | |
| H2 | 0.0516 | 0.3881 | 1.3288 | 0.030* | |
| C3 | 0.1363 (11) | 0.1728 (11) | 1.3080 (10) | 0.0247 (15) | |
| H3 | 0.1151 | 0.1727 | 1.3977 | 0.030* | |
| C4 | 0.2037 (11) | 0.0462 (11) | 1.2157 (10) | 0.0225 (14) | |
| H4 | 0.2279 | −0.0412 | 1.2407 | 0.027* | |
| C5 | 0.2355 (9) | 0.0519 (10) | 1.0815 (9) | 0.0178 (13) | |
| C6 | 0.3175 (9) | −0.1477 (10) | 0.8430 (9) | 0.0172 (13) | |
| C7 | 0.3535 (10) | −0.3113 (10) | 0.7834 (10) | 0.0215 (14) | |
| H7 | 0.3679 | −0.3693 | 0.8437 | 0.026* | |
| C8 | 0.3671 (11) | −0.3850 (11) | 0.6355 (10) | 0.0249 (15) | |
| H8 | 0.3886 | −0.4940 | 0.5944 | 0.030* | |
| C9 | 0.3485 (12) | −0.2952 (11) | 0.5481 (10) | 0.0262 (16) | |
| H9 | 0.3575 | −0.3414 | 0.4479 | 0.031* | |
| C10 | 0.3158 (11) | −0.1340 (12) | 0.6165 (10) | 0.0248 (16) | |
| H10 | 0.3034 | −0.0731 | 0.5587 | 0.030* |
| Hg1 | 0.0242 (2) | 0.0212 (2) | 0.0290 (2) | 0.00845 (13) | 0.00573 (13) | 0.01720 (14) |
| Br1 | 0.0239 (4) | 0.0253 (4) | 0.0341 (4) | 0.0070 (3) | 0.0012 (3) | 0.0194 (3) |
| Br2 | 0.0237 (4) | 0.0208 (4) | 0.0267 (4) | 0.0057 (3) | 0.0061 (3) | 0.0151 (3) |
| N1 | 0.023 (3) | 0.016 (3) | 0.019 (3) | 0.006 (2) | 0.001 (2) | 0.008 (2) |
| N2 | 0.026 (3) | 0.015 (3) | 0.022 (3) | 0.007 (2) | 0.004 (2) | 0.013 (2) |
| N3 | 0.024 (3) | 0.016 (3) | 0.018 (3) | 0.005 (2) | 0.002 (2) | 0.009 (2) |
| C1 | 0.025 (4) | 0.015 (3) | 0.032 (4) | 0.005 (3) | 0.003 (3) | 0.011 (3) |
| C2 | 0.024 (3) | 0.020 (3) | 0.030 (4) | 0.007 (3) | 0.007 (3) | 0.009 (3) |
| C3 | 0.029 (4) | 0.024 (4) | 0.022 (3) | 0.006 (3) | 0.009 (3) | 0.010 (3) |
| C4 | 0.026 (3) | 0.021 (3) | 0.024 (4) | 0.005 (3) | 0.003 (3) | 0.012 (3) |
| C5 | 0.014 (3) | 0.017 (3) | 0.020 (3) | 0.001 (2) | 0.002 (2) | 0.007 (3) |
| C6 | 0.013 (3) | 0.016 (3) | 0.020 (3) | −0.002 (2) | −0.002 (2) | 0.009 (3) |
| C7 | 0.024 (3) | 0.017 (3) | 0.024 (4) | 0.004 (3) | 0.004 (3) | 0.010 (3) |
| C8 | 0.027 (4) | 0.022 (4) | 0.023 (4) | 0.005 (3) | 0.002 (3) | 0.008 (3) |
| C9 | 0.037 (4) | 0.021 (4) | 0.017 (3) | 0.005 (3) | 0.003 (3) | 0.006 (3) |
| C10 | 0.030 (4) | 0.029 (4) | 0.020 (3) | 0.008 (3) | 0.004 (3) | 0.015 (3) |
| Br1—Hg1 | 2.5106 (11) | C5—N1 | 1.327 (10) |
| Br2—Hg1 | 2.5549 (11) | C5—N2 | 1.393 (10) |
| N1—Hg1 | 2.301 (7) | C6—N3 | 1.342 (10) |
| N2—H2A | 0.8600 | C6—N2 | 1.384 (10) |
| N3—Hg1 | 2.350 (7) | C6—C7 | 1.408 (11) |
| C1—C2 | 1.360 (13) | C7—C8 | 1.376 (12) |
| C1—N1 | 1.376 (11) | C7—H7 | 0.9300 |
| C1—H1 | 0.9300 | C8—C9 | 1.389 (13) |
| C2—C3 | 1.398 (13) | C8—H8 | 0.9300 |
| C2—H2 | 0.9300 | C9—C10 | 1.385 (12) |
| C3—C4 | 1.368 (12) | C9—H9 | 0.9300 |
| C3—H3 | 0.9300 | C10—N3 | 1.342 (11) |
| C4—C5 | 1.410 (11) | C10—H10 | 0.9300 |
| C4—H4 | 0.9300 | ||
| N1—Hg1—N3 | 81.1 (2) | C2—C3—H3 | 119.9 |
| N1—Hg1—Br1 | 109.13 (17) | C3—C4—C5 | 118.2 (8) |
| N3—Hg1—Br1 | 117.16 (17) | C3—C4—H4 | 120.9 |
| N1—Hg1—Br2 | 125.41 (17) | C5—C4—H4 | 120.9 |
| N3—Hg1—Br2 | 96.23 (18) | N1—C5—N2 | 121.7 (7) |
| Br1—Hg1—Br2 | 119.68 (3) | N1—C5—C4 | 122.9 (7) |
| C1—N1—Hg1 | 114.3 (5) | N2—C5—C4 | 115.4 (7) |
| C5—N1—Hg1 | 128.2 (6) | N3—C6—N2 | 121.6 (7) |
| C5—N1—C1 | 117.2 (7) | N3—C6—C7 | 121.6 (7) |
| C6—N2—C5 | 135.0 (7) | N2—C6—C7 | 116.9 (7) |
| C6—N2—H2A | 112.5 | C8—C7—C6 | 119.6 (8) |
| C5—N2—H2A | 112.5 | C8—C7—H7 | 120.2 |
| C6—N3—Hg1 | 126.5 (5) | C6—C7—H7 | 120.2 |
| C10—N3—Hg1 | 115.6 (6) | C7—C8—C9 | 119.4 (8) |
| C10—N3—C6 | 117.4 (7) | C7—C8—H8 | 120.3 |
| C2—C1—N1 | 123.6 (8) | C9—C8—H8 | 120.3 |
| C2—C1—H1 | 118.1 | C8—C9—C10 | 117.2 (8) |
| N1—C1—H1 | 118.3 | C8—C9—H9 | 121.4 |
| C1—C2—C3 | 117.9 (8) | C10—C9—H9 | 121.4 |
| C1—C2—H2 | 121.0 | N3—C10—C9 | 124.8 (8) |
| C3—C2—H2 | 121.1 | N3—C10—H10 | 117.5 |
| C4—C3—C2 | 120.2 (8) | C9—C10—H10 | 117.7 |
| C4—C3—H3 | 120.0 | ||
| C1—N1—Hg1—N3 | −166.6 (6) | C6—C7—C8—C9 | 1.3 (12) |
| C5—N1—Hg1—N3 | 20.2 (6) | C7—C8—C9—C10 | −0.3 (13) |
| C1—N1—Hg1—Br1 | −50.8 (6) | C8—C9—C10—N3 | −0.1 (14) |
| C5—N1—Hg1—Br1 | 136.0 (6) | N2—C5—N1—C1 | 178.0 (7) |
| C1—N1—Hg1—Br2 | 102.0 (5) | C4—C5—N1—C1 | −2.2 (11) |
| C5—N1—Hg1—Br2 | −71.1 (7) | N2—C5—N1—Hg1 | −9.0 (10) |
| C10—N3—Hg1—N1 | 168.0 (6) | C4—C5—N1—Hg1 | 170.8 (6) |
| C6—N3—Hg1—N1 | −20.2 (6) | C2—C1—N1—C5 | 1.8 (12) |
| C6—N3—Hg1—Br1 | −127.2 (6) | C2—C1—N1—Hg1 | −172.2 (7) |
| C10—N3—Hg1—Br1 | 61.0 (6) | N3—C6—N2—C5 | 16.3 (13) |
| C6—N3—Hg1—Br2 | 104.8 (6) | C7—C6—N2—C5 | −164.2 (8) |
| C10—N3—Hg1—Br2 | −67.0 (6) | N1—C5—N2—C6 | −16.8 (13) |
| N1—C1—C2—C3 | −0.2 (13) | C4—C5—N2—C6 | 163.3 (8) |
| C1—C2—C3—C4 | −1.0 (13) | C9—C10—N3—C6 | −0.4 (13) |
| C2—C3—C4—C5 | 0.6 (12) | C9—C10—N3—Hg1 | 172.2 (7) |
| C3—C4—C5—N1 | 1.0 (12) | N2—C6—N3—C10 | −179.2 (7) |
| C3—C4—C5—N2 | −179.1 (7) | C7—C6—N3—C10 | 1.4 (11) |
| N3—C6—C7—C8 | −1.8 (11) | N2—C6—N3—Hg1 | 9.2 (10) |
| N2—C6—C7—C8 | 178.7 (7) | C7—C6—N3—Hg1 | −170.3 (5) |
| H··· | ||||
| N2—H2A···Br2i | 0.86 | 2.62 | 3.472 (3) | 170 |
| C2—H2···Cg3ii | 0.93 | 3.20 | 3.587 (3) | 107 |
| Br1—Hg1 | 2.5106 (11) |
| Br2—Hg1 | 2.5549 (11) |
| N1—Hg1 | 2.301 (7) |
| N3—Hg1 | 2.350 (7) |
| N1—Hg1—N3 | 81.1 (2) |
| N1—Hg1—Br1 | 109.13 (17) |
| N3—Hg1—Br1 | 117.16 (17) |
| N1—Hg1—Br2 | 125.41 (17) |
| N3—Hg1—Br2 | 96.23 (18) |
| Br1—Hg1—Br2 | 119.68 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 2.62 | 3.472 (3) | 170 |
| C2—H2⋯ | 0.93 | 3.20 | 3.587 (3) | 107 |
Symmetry codes: (i) ; (ii) . Cg3 is the centroid of the N3/C6–C10 ring.