Literature DB >> 21581161

Diaqua-bis(2-pyridylphospho-nato N-oxide-κO,O)cobalt(II).

Yun-Sheng Ma1, Tian-Xian Lu.   

Abstract

In the title complex, [Co(C(5)H(5)NO(4)P)(2)(H(2)O)(2)], the Co(II) ion, which lies on a crystallographic inversion center, is coordin-ated by four O atoms from two bidentate 2-phospho-nato-pyridine N-oxide ligands and two O atoms from two water ligands in a slightly distorted octa-hedral environment. Mol-ecules are inter-linked by three O-H⋯O hydrogen bonds and one weak C-H⋯O inter-action, forming a three-dimensional supra-molecular structure.

Entities:  

Year:  2008        PMID: 21581161      PMCID: PMC2960075          DOI: 10.1107/S1600536808037185

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For new open frameworks based on metal pyridylphospho­nates, see: Ayyappan et al. (2001 ▶). For two-dimensional Cu-phospho­nates, see: Ma et al. (2006 ▶). For one-dimensional Cu-phospho­nates containing bridging ligands, see: Ma et al. (2007 ▶). For catalytic and magnetic properties of metal phospho­nates, see: Cao et al. (1992 ▶). For the layered structures of monophospho­nic acids and transition metal ions, see Clearfield (1998 ▶). For a tetra­aqua-Co(II)-4-hydroxy­pyridine-2,6-dicarboxyl­ate structure, see: Cui et al. (2006 ▶). For weak C—H⋯O hydrogen-bonding contacts, see: Desiraju & Steiner (2001 ▶). For the synthesis of the ligand (2-pyridyl-N-oxide)phospho­nic acid, see: McCabe et al. (1987 ▶).

Experimental

Crystal data

[Co(C5H5NO4P)2(H2O)2] M = 443.10 Monoclinic, a = 4.7899 (10) Å b = 12.075 (2) Å c = 14.162 (3) Å β = 99.51 (3)° V = 807.8 (3) Å3 Z = 2 Mo Kα radiation μ = 1.32 mm−1 T = 293 (2) K 0.5 × 0.3 × 0.2 mm

Data collection

Rigaku SCX mini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.625, T max = 0.766 8068 measured reflections 1848 independent reflections 1373 reflections with I > 2σ(I) R int = 0.083

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.109 S = 1.05 1848 reflections 127 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.39 e Å−3 Δρmin = −0.45 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC and PLATON (Spek, 2003 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808037185/si2126sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808037185/si2126Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C5H5NO4P)2(H2O)2]F000 = 450
Mr = 443.10Dx = 1.822 Mg m3
Monoclinic, P21/nMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6955 reflections
a = 4.7899 (10) Åθ = 3.4–27.7º
b = 12.075 (2) ŵ = 1.32 mm1
c = 14.162 (3) ÅT = 293 (2) K
β = 99.51 (3)ºNeedle, pink
V = 807.8 (3) Å30.5 × 0.3 × 0.2 mm
Z = 2
Rigaku MACHINE? diffractometer1848 independent reflections
Radiation source: fine-focus sealed tube1373 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.083
Detector resolution: 13.6612 pixels mm-1θmax = 27.5º
T = 293(2) Kθmin = 3.4º
dtfind.ref scansh = −6→6
Absorption correction: multi-scan(CrystalClear; Rigaku, 2005)k = −15→15
Tmin = 0.625, Tmax = 0.766l = −18→18
8068 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.109  w = 1/[σ2(Fo2) + (0.0457P)2 + 0.1404P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max < 0.001
1848 reflectionsΔρmax = 0.39 e Å3
127 parametersΔρmin = −0.45 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.00000.50000.0251 (2)
P10.06589 (18)0.23457 (7)0.41631 (6)0.0247 (2)
O10.2057 (5)0.14984 (17)0.48661 (15)0.0265 (5)
O2−0.1949 (5)0.2903 (2)0.43729 (17)0.0367 (6)
O30.2811 (5)0.3247 (2)0.39564 (18)0.0328 (6)
H3A0.455 (9)0.307 (3)0.406 (3)0.055 (14)*
O4−0.2925 (5)0.0442 (2)0.37548 (16)0.0326 (6)
O1W0.2669 (6)−0.0782 (3)0.4170 (2)0.0317 (6)
H1WA0.362 (8)−0.043 (3)0.389 (3)0.031 (12)*
H1WB0.362 (9)−0.120 (4)0.449 (3)0.057 (17)*
N1−0.1928 (6)0.0750 (2)0.29606 (19)0.0281 (7)
C1−0.0157 (7)0.1641 (3)0.3010 (2)0.0273 (8)
C20.0908 (8)0.1928 (3)0.2193 (3)0.0365 (9)
H20.21410.25250.22100.044*
C30.0168 (9)0.1342 (3)0.1355 (3)0.0450 (10)
H30.09100.15340.08110.054*
C4−0.1695 (9)0.0462 (4)0.1332 (3)0.0465 (11)
H4−0.22570.00710.07670.056*
C5−0.2703 (9)0.0173 (3)0.2146 (3)0.0407 (10)
H5−0.3930−0.04260.21380.049*
U11U22U33U12U13U23
Co10.0192 (4)0.0303 (4)0.0261 (4)−0.0024 (3)0.0050 (3)0.0041 (3)
P10.0175 (5)0.0272 (5)0.0299 (5)−0.0009 (4)0.0049 (4)0.0017 (4)
O10.0208 (12)0.0281 (12)0.0301 (13)−0.0053 (10)0.0031 (10)0.0049 (10)
O20.0216 (14)0.0389 (15)0.0494 (16)0.0026 (12)0.0056 (12)−0.0042 (12)
O30.0177 (14)0.0330 (14)0.0464 (16)−0.0028 (12)0.0010 (12)0.0074 (11)
O40.0244 (14)0.0436 (15)0.0301 (13)−0.0085 (11)0.0050 (11)0.0067 (11)
O1W0.0271 (15)0.0354 (16)0.0339 (16)−0.0008 (14)0.0084 (13)0.0033 (13)
N10.0279 (16)0.0325 (16)0.0232 (15)0.0009 (14)0.0020 (12)0.0032 (12)
C10.0207 (18)0.0320 (19)0.0288 (18)0.0021 (16)0.0033 (15)0.0034 (15)
C20.035 (2)0.040 (2)0.037 (2)0.0009 (18)0.0113 (18)0.0096 (17)
C30.056 (3)0.053 (3)0.028 (2)0.011 (2)0.0147 (19)0.0060 (18)
C40.062 (3)0.044 (2)0.031 (2)0.010 (2)0.002 (2)−0.0053 (18)
C50.046 (3)0.037 (2)0.037 (2)−0.0031 (19)−0.0016 (19)−0.0040 (17)
Co1—O12.084 (2)O1W—H1WA0.77 (4)
Co1—O1i2.084 (2)O1W—H1WB0.77 (4)
Co1—O1Wi2.099 (3)N1—C51.346 (4)
Co1—O1W2.099 (3)N1—C11.365 (4)
Co1—O42.131 (2)C1—C21.383 (5)
Co1—O4i2.131 (2)C2—C31.377 (5)
P1—O21.491 (2)C2—H20.9300
P1—O11.505 (2)C3—C41.384 (6)
P1—O31.560 (3)C3—H30.9300
P1—C11.826 (3)C4—C51.367 (5)
O3—H3A0.85 (4)C4—H40.9300
O4—N11.345 (3)C5—H50.9300
O1—Co1—O1i180.0N1—O4—Co1119.04 (18)
O1—Co1—O1Wi90.07 (11)Co1—O1W—H1WA120 (3)
O1i—Co1—O1Wi89.93 (11)Co1—O1W—H1WB108 (3)
O1—Co1—O1W89.93 (11)H1WA—O1W—H1WB108 (4)
O1i—Co1—O1W90.07 (11)O4—N1—C5119.2 (3)
O1Wi—Co1—O1W180.000 (1)O4—N1—C1118.6 (3)
O1—Co1—O487.91 (9)C5—N1—C1122.2 (3)
O1i—Co1—O492.09 (9)N1—C1—C2117.8 (3)
O1Wi—Co1—O488.45 (10)N1—C1—P1116.9 (2)
O1W—Co1—O491.55 (10)C2—C1—P1125.3 (3)
O1—Co1—O4i92.09 (9)C3—C2—C1120.9 (4)
O1i—Co1—O4i87.91 (9)C3—C2—H2119.5
O1Wi—Co1—O4i91.55 (10)C1—C2—H2119.5
O1W—Co1—O4i88.45 (10)C2—C3—C4119.2 (4)
O4—Co1—O4i180.00 (9)C2—C3—H3120.4
O2—P1—O1118.07 (14)C4—C3—H3120.4
O2—P1—O3108.89 (15)C5—C4—C3119.5 (4)
O1—P1—O3111.28 (14)C5—C4—H4120.2
O2—P1—C1109.02 (15)C3—C4—H4120.2
O1—P1—C1106.32 (14)N1—C5—C4120.3 (4)
O3—P1—C1101.99 (15)N1—C5—H5119.9
P1—O1—Co1119.01 (13)C4—C5—H5119.9
P1—O3—H3A117 (3)
O2—P1—O1—Co168.83 (18)O4—N1—C1—P1−0.7 (4)
O3—P1—O1—Co1−164.20 (13)C5—N1—C1—P1179.3 (3)
C1—P1—O1—Co1−53.93 (18)O2—P1—C1—N1−68.0 (3)
O1Wi—Co1—O1—P1−78.04 (16)O1—P1—C1—N160.3 (3)
O1W—Co1—O1—P1101.96 (16)O3—P1—C1—N1176.9 (2)
O4—Co1—O1—P110.41 (15)O2—P1—C1—C2113.0 (3)
O4i—Co1—O1—P1−169.59 (15)O1—P1—C1—C2−118.7 (3)
O1—Co1—O4—N152.1 (2)O3—P1—C1—C2−2.0 (3)
O1i—Co1—O4—N1−127.9 (2)N1—C1—C2—C30.9 (5)
O1Wi—Co1—O4—N1142.2 (2)P1—C1—C2—C3179.9 (3)
O1W—Co1—O4—N1−37.8 (2)C1—C2—C3—C40.8 (6)
Co1—O4—N1—C5121.0 (3)C2—C3—C4—C5−1.8 (6)
Co1—O4—N1—C1−59.0 (3)O4—N1—C5—C4−179.3 (3)
O4—N1—C1—C2178.3 (3)C1—N1—C5—C40.7 (5)
C5—N1—C1—C2−1.7 (5)C3—C4—C5—N11.1 (6)
D—H···AD—HH···AD···AD—H···A
O1W—H1WB···O1ii0.77 (4)2.15 (5)2.803 (4)142 (4)
O3—H3A···O2iii0.85 (4)1.68 (4)2.516 (3)171 (4)
O1W—H1WA···O4iii0.77 (4)2.00 (4)2.719 (4)155 (4)
C3—H3···O2iv0.932.523.449 (5)178
Co1—O12.084 (2)
Co1—O1W2.099 (3)
Co1—O42.131 (2)
O1—Co1—O1W89.93 (11)
O1—Co1—O487.91 (9)
O1W—Co1—O491.55 (10)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WB⋯O1i0.77 (4)2.15 (5)2.803 (4)142 (4)
O3—H3A⋯O2ii0.85 (4)1.68 (4)2.516 (3)171 (4)
O1W—H1WA⋯O4ii0.77 (4)2.00 (4)2.719 (4)155 (4)
C3—H3⋯O2iii0.932.523.449 (5)178

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dinuclear and layered copper 2-pyridylphosphonates with weak ferromagnetism observed in layer compound Cu(C5H4NPO3).

Authors:  Yun-Sheng Ma; You Song; Wen-Xin Du; Yi-Zhi Li; Li-Min Zheng
Journal:  Dalton Trans       Date:  2006-04-07       Impact factor: 4.390

3.  New open frameworks based on metal pyridylphosphonates.

Authors:  P Ayyappan; O R Evans; B M Foxman; K A Wheeler; T H Warren; W Lin
Journal:  Inorg Chem       Date:  2001-11-05       Impact factor: 5.165

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.