Literature DB >> 21580759

1,3-Dithian-2-one azine.

Yan-Bo Wang, Yan Shi, Xiao-Lan Liu, Yong-Hong Liu.   

Abstract

In an asymmetric unit of the title compound, C(8)H(12)N(2)S(4), there are two crystallographically independent half mol-ecules lying on inversion centers. One of the mol-ecules is disordered over two positions with relative occupancies of 82.0 (2) and 18.0 (2) for the major and minor components. In the crystal structure, mol-ecules are linked into a three-dimensional framework via inter-molecular C-H⋯N hydrogen-bonding inter-actions.

Entities:  

Year:  2010        PMID: 21580759      PMCID: PMC2983825          DOI: 10.1107/S1600536810010524

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Mayer & Schaefer (1964 ▶); Xu et al. (2005 ▶). For the use of 2-hydrazono-1,3-dithiol­ane derivatives in coordination chemistry and their biological activity, see: Beghidja et al. (2006 ▶); Gou et al. (2004 ▶). For 1,3-dithian-2-yl­idene derivatives as anti­mycotic agents and an important synthesis medium, see: Dong et al. (2005 ▶); Ram et al. (1997 ▶). For related structures, see: Liu, Liu & Liu (2008 ▶); Liu, Liu, Dai et al. (2008 ▶); Yang et al. (2007 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For dithian ring conformations, see: Boeyens (1978 ▶).

Experimental

Crystal data

C8H12N2S4 M = 264.44 Monoclinic, a = 9.3999 (11) Å b = 11.9251 (14) Å c = 10.7397 (13) Å β = 91.555 (2)° V = 1203.4 (2) Å3 Z = 4 Mo Kα radiation μ = 0.75 mm−1 T = 293 K 0.22 × 0.21 × 0.19 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.852, T max = 0.870 10905 measured reflections 2998 independent reflections 2478 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.01 2998 reflections 151 parameters 14 restraints H-atom parameters constrained Δρmax = 0.65 e Å−3 Δρmin = −0.41 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810010524/pv2263sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810010524/pv2263Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12N2S4F(000) = 552
Mr = 264.44Dx = 1.460 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5734 reflections
a = 9.3999 (11) Åθ = 2.8–28.2°
b = 11.9251 (14) ŵ = 0.75 mm1
c = 10.7397 (13) ÅT = 293 K
β = 91.555 (2)°Block, colorless
V = 1203.4 (2) Å30.22 × 0.21 × 0.19 mm
Z = 4
Bruker SMART 1000 CCD diffractometer2998 independent reflections
Radiation source: fine-focus sealed tube2478 reflections with I > 2σ(I)
graphiteRint = 0.055
φ & ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −12→12
Tmin = 0.852, Tmax = 0.870k = −15→15
10905 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0561P)2 + 0.7487P] where P = (Fo2 + 2Fc2)/3
2998 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.65 e Å3
14 restraintsΔρmin = −0.41 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.71338 (9)0.70901 (9)−0.02533 (9)0.0596 (3)0.820 (2)
S20.74955 (10)0.49843 (7)0.12799 (9)0.0510 (2)0.820 (2)
N10.5250 (2)0.5510 (2)−0.0239 (2)0.0424 (5)0.820 (2)
C10.6487 (3)0.5788 (2)0.0219 (2)0.0373 (5)0.820 (2)
C20.9037 (4)0.6810 (11)−0.0147 (11)0.0581 (12)0.820 (2)
H2A0.92350.6125−0.05980.070*0.820 (2)
H2B0.95400.7416−0.05450.070*0.820 (2)
C30.9597 (16)0.6690 (9)0.1184 (11)0.0525 (15)0.820 (2)
H3A1.04890.62820.11850.063*0.820 (2)
H3B0.97870.74300.15250.063*0.820 (2)
C40.8569 (18)0.6085 (10)0.2011 (13)0.0554 (15)0.820 (2)
H4A0.79300.66370.23550.053 (9)*0.820 (2)
H4B0.91090.57580.27020.072 (12)*0.820 (2)
S1'0.6929 (5)0.6622 (4)−0.0158 (5)0.0596 (3)0.180 (2)
S2'0.7925 (5)0.4809 (4)0.1612 (5)0.0510 (2)0.180 (2)
N1'0.5477 (10)0.4742 (9)0.0420 (10)0.0424 (5)0.180 (2)
C1'0.6632 (10)0.5345 (8)0.0577 (10)0.0373 (5)0.180 (2)
C2'0.8826 (16)0.687 (5)−0.007 (6)0.0581 (12)0.180 (2)
H2C0.92530.6486−0.07560.070*0.180 (2)
H2D0.89810.7670−0.01900.070*0.180 (2)
C3'0.962 (8)0.653 (5)0.112 (5)0.0525 (15)0.180 (2)
H3D1.02850.59400.09200.063*0.180 (2)
H3C1.01710.71680.14230.063*0.180 (2)
C4'0.868 (9)0.613 (4)0.215 (7)0.0554 (15)0.180 (2)
H4D0.79350.66670.22980.066*0.180 (2)
H4C0.92360.60180.29110.066*0.180 (2)
S30.72455 (7)0.16120 (6)−0.00561 (6)0.0599 (2)
S40.79852 (6)−0.03342 (5)0.16643 (6)0.04884 (18)
N20.9581 (2)0.04587 (17)−0.02005 (18)0.0489 (5)
C50.8418 (2)0.05424 (19)0.0413 (2)0.0428 (5)
C60.6094 (2)−0.0073 (2)0.1744 (2)0.0541 (6)
H6A0.5649−0.02590.09450.065*
H6B0.5702−0.05700.23620.065*
C70.5708 (4)0.1115 (3)0.2068 (4)0.0831 (11)
H7A0.57980.12050.29650.100*
H7B0.47170.12390.18310.100*
C80.6605 (3)0.2012 (2)0.1454 (3)0.0649 (7)
H8A0.74150.21850.19990.078*
H8B0.60410.26900.13610.078*
U11U22U33U12U13U23
S10.0474 (4)0.0466 (6)0.0836 (5)−0.0132 (4)−0.0182 (4)0.0194 (4)
S20.0423 (5)0.0480 (4)0.0625 (5)−0.0055 (3)−0.0045 (3)0.0150 (3)
N10.0389 (12)0.0444 (12)0.0440 (11)−0.0099 (10)0.0005 (9)0.0025 (9)
C10.0360 (11)0.0375 (14)0.0385 (13)−0.0038 (11)0.0038 (9)−0.0002 (9)
C20.0420 (16)0.069 (2)0.063 (2)−0.015 (3)0.002 (2)0.0097 (18)
C30.0398 (14)0.048 (4)0.069 (2)−0.008 (3)−0.0076 (15)0.002 (2)
C40.044 (3)0.0705 (19)0.051 (4)−0.0066 (13)−0.006 (3)−0.0005 (16)
S1'0.0474 (4)0.0466 (6)0.0836 (5)−0.0132 (4)−0.0182 (4)0.0194 (4)
S2'0.0423 (5)0.0480 (4)0.0625 (5)−0.0055 (3)−0.0045 (3)0.0150 (3)
N1'0.0389 (12)0.0444 (12)0.0440 (11)−0.0099 (10)0.0005 (9)0.0025 (9)
C1'0.0360 (11)0.0375 (14)0.0385 (13)−0.0038 (11)0.0038 (9)−0.0002 (9)
C2'0.0420 (16)0.069 (2)0.063 (2)−0.015 (3)0.002 (2)0.0097 (18)
C3'0.0398 (14)0.048 (4)0.069 (2)−0.008 (3)−0.0076 (15)0.002 (2)
C4'0.044 (3)0.0705 (19)0.051 (4)−0.0066 (13)−0.006 (3)−0.0005 (16)
S30.0493 (4)0.0688 (5)0.0621 (4)0.0031 (3)0.0130 (3)0.0238 (3)
S40.0423 (3)0.0489 (3)0.0557 (3)−0.0007 (2)0.0075 (2)0.0089 (2)
N20.0451 (10)0.0511 (11)0.0511 (10)−0.0027 (8)0.0109 (8)0.0014 (8)
C50.0382 (10)0.0455 (11)0.0449 (11)−0.0057 (9)0.0069 (8)−0.0018 (9)
C60.0391 (11)0.0677 (16)0.0560 (13)−0.0061 (11)0.0097 (10)0.0143 (11)
C70.0716 (19)0.080 (2)0.100 (2)0.0246 (17)0.0506 (18)0.0327 (18)
C80.0587 (15)0.0575 (15)0.0798 (18)0.0140 (13)0.0237 (13)0.0095 (13)
S1—C11.748 (3)C2'—H2C0.9700
S1—C21.821 (5)C2'—H2D0.9700
S2—C11.749 (3)C3'—C4'1.512 (10)
S2—C41.821 (4)C3'—H3D0.9700
N1—C11.293 (3)C3'—H3C0.9700
N1—N1i1.406 (4)C4'—H4D0.9700
C2—C31.516 (5)C4'—H4C0.9700
C2—H2A0.9700S3—C51.751 (2)
C2—H2B0.9700S3—C81.810 (3)
C3—C41.514 (5)S4—C51.759 (2)
C3—H3A0.9700S4—C61.809 (2)
C3—H3B0.9700N2—C51.296 (3)
C4—H4A0.9700N2—N2ii1.409 (4)
C4—H4B0.9700C6—C71.505 (4)
S1'—C1'1.741 (8)C6—H6A0.9700
S1'—C2'1.809 (10)C6—H6B0.9700
S2'—C1'1.746 (8)C7—C81.523 (4)
S2'—C4'1.811 (10)C7—H7A0.9700
N1'—C1'1.309 (9)C7—H7B0.9700
N1'—N1'i1.40 (2)C8—H8A0.9700
C2'—C3'1.513 (10)C8—H8B0.9700
C1—S1—C299.6 (4)C4'—C3'—C2'115 (6)
C1—S2—C499.8 (6)C4'—C3'—H3D108.6
C1—N1—N1i112.9 (3)C2'—C3'—H3D108.6
N1—C1—S1115.7 (2)C4'—C3'—H3C108.6
N1—C1—S2125.0 (2)C2'—C3'—H3C108.6
S1—C1—S2119.30 (14)H3D—C3'—H3C107.6
C3—C2—S1113.1 (9)C3'—C4'—S2'106 (4)
C3—C2—H2A109.0C3'—C4'—H4D110.5
S1—C2—H2A109.0S2'—C4'—H4D110.5
C3—C2—H2B109.0C3'—C4'—H4C110.5
S1—C2—H2B109.0S2'—C4'—H4C110.5
H2A—C2—H2B107.8H4D—C4'—H4C108.7
C4—C3—C2112.8 (12)C5—S3—C899.00 (12)
C4—C3—H3A109.0C5—S4—C6100.47 (11)
C2—C3—H3A109.0C5—N2—N2ii112.1 (2)
C4—C3—H3B109.0N2—C5—S3116.29 (17)
C2—C3—H3B109.0N2—C5—S4123.96 (19)
H3A—C3—H3B107.8S3—C5—S4119.75 (12)
C3—C4—S2116.5 (8)C7—C6—S4114.6 (2)
C3—C4—H4A108.2C7—C6—H6A108.6
S2—C4—H4A108.2S4—C6—H6A108.6
C3—C4—H4B108.2C7—C6—H6B108.6
S2—C4—H4B108.2S4—C6—H6B108.6
H4A—C4—H4B107.3H6A—C6—H6B107.6
C1'—S1'—C2'107 (2)C6—C7—C8114.9 (2)
C1'—S2'—C4'98 (3)C6—C7—H7A108.5
C1'—N1'—N1'i111.0 (11)C8—C7—H7A108.5
N1'—C1'—S1'124.3 (7)C6—C7—H7B108.5
N1'—C1'—S2'116.2 (7)C8—C7—H7B108.5
S1'—C1'—S2'119.4 (5)H7A—C7—H7B107.5
C3'—C2'—S1'118 (4)C7—C8—S3113.8 (2)
C3'—C2'—H2C107.9C7—C8—H8A108.8
S1'—C2'—H2C107.9S3—C8—H8A108.8
C3'—C2'—H2D107.9C7—C8—H8B108.8
S1'—C2'—H2D107.9S3—C8—H8B108.8
H2C—C2'—H2D107.2H8A—C8—H8B107.7
D—H···AD—HH···AD···AD—H···A
C4—H4B···N2iii0.972.713.620 (7)157
C4'—H4C···N2iii0.972.703.503 (7)141
C6—H6B···N1iii0.972.623.397 (6)137
C6—H6B···N1'iv0.972.683.428 (6)134
C2'—H2D···N2v0.972.643.529 (7)152
C2—H2B···N2v0.972.783.523 (7)134
C8—H8B···N1i0.972.733.654 (3)159
C8—H8B···N1'0.972.703.591 (3)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4B⋯N2i0.972.713.620 (7)157
C4′—H4C⋯N2i0.972.703.503 (7)141
C6—H6B⋯N1i0.972.623.397 (6)137
C6—H6B⋯N1′ii0.972.683.428 (6)134
C2′—H2D⋯N2iii0.972.643.529 (7)152
C2—H2B⋯N2iii0.972.783.523 (7)134
C8—H8B⋯N1iv0.972.733.654 (3)159
C8—H8B⋯N1′0.972.703.591 (3)154

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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