Literature DB >> 24940290

(3Z)-3-[(Z)-2-(2-Oxoindolin-3-yl-idene)hydrazin-1-yl-idene]indolin-2-one 0.17-hydrate.

Yong-Hong Liu1, Lei Zhao2, Ming-Xuan Liu2, Hai Lin2, Jing-Jing Li2.   

Abstract

In the title compound, C16H10N4O2·0.17H2O, prepared by the one-step condensation reaction of isatin with hydrazine hydrate under microwave irradiation, the complete organic mol-ecule is generated by crystallographic inversion symmetry and therefore exists in an S-trans conformation. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, generating a three-dimensional framework with [001] channels, which are occupied by the disordered water mol-ecules.

Entities:  

Year:  2014        PMID: 24940290      PMCID: PMC4051016          DOI: 10.1107/S1600536814011805

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to microwave synthesis, see: Hoz et al. (2004 ▶); Jagani et al. (2012 ▶). For our previous work in this area, see: Liu et al. (2008 ▶); Wang et al. (2010 ▶). For the coventional synthesis of the title compound, see: Ali & Alam (1994 ▶).

Experimental

Crystal data

C16H10N4O2·0.17H2O M = 308.30 Trigonal, a = 24.8699 (18) Å c = 5.6603 (8) Å V = 3031.9 (5) Å3 Z = 9 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.38 × 0.16 × 0.14 mm

Data collection

Bruker SMART1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.963, T max = 0.986 8691 measured reflections 1547 independent reflections 1290 reflections with I > 2σigma(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.108 S = 1.01 1547 reflections 103 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009) ▶; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814011805/hb7227sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814011805/hb7227Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814011805/hb7227Isup3.cml CCDC reference: 1004532 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H10N4O2·0.17H2OF(000) = 1369
Mr = 308.30Dx = 1.450 Mg m3
Trigonal, R3Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -R 3θ = 2.8–27.2°
a = 24.8699 (18) ŵ = 0.10 mm1
c = 5.6603 (8) ÅT = 296 K
V = 3031.9 (5) Å3Block, brown
Z = 90.38 × 0.16 × 0.14 mm
Bruker SMART1000 CCD diffractometer1547 independent reflections
Radiation source: fine-focus sealed tube1290 reflections with I > 2σigma(I)
Graphite monochromatorRint = 0.025
thin–slice ω scansθmax = 27.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −32→32
Tmin = 0.963, Tmax = 0.986k = −29→32
8691 measured reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0545P)2 + 2.5765P] where P = (Fo2 + 2Fc2)/3
1547 reflections(Δ/σ)max < 0.001
103 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. The title compound was synthesized under microwave irradiation.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.25001 (6)0.06795 (6)0.2063 (2)0.0345 (3)
C20.20279 (7)0.05119 (7)0.3672 (3)0.0429 (3)
H20.19750.02500.49340.051*
C30.16336 (8)0.07495 (8)0.3331 (3)0.0515 (4)
H30.13100.06440.43900.062*
C40.17099 (8)0.11403 (8)0.1452 (3)0.0521 (4)
H40.14340.12860.12570.063*
C50.21929 (7)0.13147 (7)−0.0134 (3)0.0439 (3)
H50.22470.1581−0.13790.053*
C60.25943 (6)0.10844 (6)0.0170 (2)0.0341 (3)
C70.31363 (6)0.11575 (6)−0.1095 (2)0.0336 (3)
C80.33439 (6)0.07495 (6)0.0163 (2)0.0349 (3)
N10.29469 (5)0.04931 (5)0.20131 (19)0.0386 (3)
H10.29670.02460.30260.046*
N20.34522 (6)0.14844 (5)−0.2881 (2)0.0406 (3)
O10.37735 (5)0.06693 (5)−0.03535 (18)0.0459 (3)
O1W0.00000.00000.248 (4)0.177 (8)0.25
U11U22U33U12U13U23
C10.0402 (7)0.0309 (6)0.0306 (6)0.0163 (5)0.0026 (5)0.0005 (5)
C20.0495 (8)0.0409 (7)0.0372 (7)0.0217 (6)0.0112 (6)0.0069 (6)
C30.0532 (9)0.0532 (9)0.0516 (9)0.0291 (8)0.0181 (7)0.0037 (7)
C40.0582 (9)0.0549 (9)0.0574 (10)0.0388 (8)0.0097 (7)0.0033 (7)
C50.0547 (9)0.0410 (7)0.0422 (8)0.0287 (7)0.0055 (6)0.0060 (6)
C60.0412 (7)0.0297 (6)0.0297 (6)0.0165 (5)0.0034 (5)0.0017 (5)
C70.0385 (7)0.0309 (6)0.0281 (6)0.0149 (5)0.0011 (5)0.0005 (5)
C80.0394 (7)0.0345 (6)0.0292 (6)0.0173 (5)0.0018 (5)0.0003 (5)
N10.0461 (6)0.0415 (6)0.0327 (6)0.0252 (5)0.0067 (5)0.0103 (5)
N20.0460 (7)0.0416 (6)0.0335 (6)0.0214 (5)0.0066 (5)0.0095 (5)
O10.0479 (6)0.0568 (6)0.0415 (6)0.0325 (5)0.0074 (4)0.0050 (5)
O1W0.093 (6)0.093 (6)0.34 (3)0.047 (3)0.0000.000
C1—C21.3756 (19)C5—C61.388 (2)
C1—N11.4022 (17)C5—H50.9300
C1—C61.4073 (17)C6—C71.4554 (18)
C2—C31.389 (2)C7—N21.2891 (17)
C2—H20.9300C7—C81.5254 (18)
C3—C41.388 (2)C8—O11.2165 (17)
C3—H30.9300C8—N11.3594 (17)
C4—C51.384 (2)N1—H10.8593
C4—H40.9300N2—N2i1.404 (2)
C2—C1—N1127.63 (12)C6—C5—H5120.6
C2—C1—C6122.16 (13)C5—C6—C1119.53 (12)
N1—C1—C6110.21 (11)C5—C6—C7134.43 (12)
C1—C2—C3117.17 (13)C1—C6—C7106.04 (11)
C1—C2—H2121.4N2—C7—C6134.34 (12)
C3—C2—H2121.4N2—C7—C8118.92 (12)
C4—C3—C2121.72 (14)C6—C7—C8106.71 (10)
C4—C3—H3119.1O1—C8—N1126.85 (12)
C2—C3—H3119.1O1—C8—C7127.86 (12)
C5—C4—C3120.64 (14)N1—C8—C7105.29 (11)
C5—C4—H4119.7C8—N1—C1111.72 (10)
C3—C4—H4119.7C8—N1—H1124.1
C4—C5—C6118.75 (13)C1—N1—H1124.2
C4—C5—H5120.6C7—N2—N2i111.89 (14)
N1—C1—C2—C3−178.92 (14)C5—C6—C7—C8−177.99 (15)
C6—C1—C2—C31.3 (2)C1—C6—C7—C81.50 (14)
C1—C2—C3—C40.0 (2)N2—C7—C8—O1−2.8 (2)
C2—C3—C4—C5−1.1 (3)C6—C7—C8—O1178.67 (13)
C3—C4—C5—C60.9 (2)N2—C7—C8—N1176.85 (12)
C4—C5—C6—C10.3 (2)C6—C7—C8—N1−1.65 (14)
C4—C5—C6—C7179.71 (15)O1—C8—N1—C1−179.13 (13)
C2—C1—C6—C5−1.4 (2)C7—C8—N1—C11.18 (14)
N1—C1—C6—C5178.74 (12)C2—C1—N1—C8179.94 (13)
C2—C1—C6—C7178.98 (12)C6—C1—N1—C8−0.26 (15)
N1—C1—C6—C7−0.83 (14)C6—C7—N2—N2i0.1 (2)
C5—C6—C7—N23.8 (3)C8—C7—N2—N2i−177.92 (13)
C1—C6—C7—N2−176.67 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1ii0.862.132.8951 (17)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.132.8951 (17)148

Symmetry code: (i) .

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