Literature DB >> 21580675

3-(2,4-Dichloro-phen-yl)-5-phenyl-1,2,4-oxadiazole.

Hoong-Kun Fun, Mohd Mustaqim Rosli, Sankappa Rai, Arun M Isloor, Prakash Shetty.   

Abstract

In the title compound, C(14)H(8)Cl(2)N(2)O, the dihedral angles between the plane of the oxadiazole ring and those of the benzene rings are 2.3 (1) and 9.5 (1)°. In the crystal, mol-ecules are linked into chains along the c axis by C-H⋯Cl inter-actions. These chains are stacked along the a axis.

Entities:  

Year:  2010        PMID: 21580675      PMCID: PMC2984080          DOI: 10.1107/S160053681000927X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of heterocyclic compounds including oxadiazo­les, see: Andersen et al. (1994 ▶); Showell et al. (1991 ▶); Watjen et al. (1989 ▶); Swain et al. (1991 ▶); Clitherow et al. (1996 ▶). For their pharmacological and medicinal activity, see: Isloor et al. (2010 ▶); Chandrakantha et al. (2010 ▶). For a related structure, see: Wang et al. (2006 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C14H8Cl2N2O M = 291.12 Triclinic, a = 3.8035 (2) Å b = 10.9666 (7) Å c = 14.6949 (9) Å α = 99.044 (2)° β = 91.158 (2)° γ = 98.891 (2)° V = 597.43 (6) Å3 Z = 2 Mo Kα radiation μ = 0.53 mm−1 T = 100 K 0.41 × 0.13 × 0.09 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.809, T max = 0.953 12084 measured reflections 2692 independent reflections 2355 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.121 S = 1.14 2692 reflections 204 parameters All H-atom parameters refined Δρmax = 0.55 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681000927X/sj2743sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681000927X/sj2743Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H8Cl2N2OZ = 2
Mr = 291.12F(000) = 296
Triclinic, P1Dx = 1.618 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 3.8035 (2) ÅCell parameters from 7625 reflections
b = 10.9666 (7) Åθ = 2.5–36.0°
c = 14.6949 (9) ŵ = 0.53 mm1
α = 99.044 (2)°T = 100 K
β = 91.158 (2)°Block, colourless
γ = 98.891 (2)°0.41 × 0.13 × 0.09 mm
V = 597.43 (6) Å3
Bruker SMART APEXII CCD area-detector diffractometer2692 independent reflections
Radiation source: fine-focus sealed tube2355 reflections with I > 2σ(I)
graphiteRint = 0.035
φ and ω scansθmax = 27.5°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −4→4
Tmin = 0.809, Tmax = 0.953k = −14→14
12084 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121All H-atom parameters refined
S = 1.14w = 1/[σ2(Fo2) + (0.0727P)2 + 0.3227P] where P = (Fo2 + 2Fc2)/3
2692 reflections(Δ/σ)max = 0.001
204 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.67894 (14)0.17290 (4)0.56305 (3)0.02303 (17)
Cl20.74585 (13)0.52050 (4)0.34575 (3)0.01905 (16)
O11.0808 (4)0.40239 (12)0.07273 (9)0.0188 (3)
N11.1293 (4)0.22993 (14)0.12866 (10)0.0152 (3)
N20.9704 (5)0.42193 (15)0.16440 (11)0.0186 (3)
C11.3840 (5)0.31992 (18)−0.09742 (13)0.0182 (4)
C21.5167 (6)0.27272 (19)−0.18064 (13)0.0207 (4)
C31.5623 (5)0.14861 (19)−0.19917 (13)0.0197 (4)
C41.4763 (5)0.06975 (18)−0.13435 (12)0.0180 (4)
C51.3476 (5)0.11647 (17)−0.05099 (12)0.0157 (4)
C61.3013 (5)0.24188 (17)−0.03204 (12)0.0146 (4)
C71.1707 (5)0.28734 (17)0.05746 (12)0.0152 (4)
C81.0052 (5)0.31698 (17)0.19311 (12)0.0141 (4)
C90.9255 (5)0.28872 (16)0.28577 (12)0.0146 (4)
C100.9670 (5)0.16979 (17)0.30360 (12)0.0155 (4)
C110.8962 (5)0.13252 (18)0.38802 (13)0.0172 (4)
C120.7795 (5)0.21663 (18)0.45703 (12)0.0171 (4)
C130.7382 (5)0.33600 (18)0.44337 (12)0.0172 (4)
C140.8094 (5)0.37087 (16)0.35794 (12)0.0155 (4)
H1A1.360 (7)0.402 (3)−0.0859 (17)0.026 (6)*
H2A1.572 (7)0.323 (2)−0.2233 (18)0.024 (6)*
H3A1.664 (7)0.121 (2)−0.2558 (18)0.029 (7)*
H4A1.483 (6)−0.015 (2)−0.1458 (15)0.015 (5)*
H5A1.325 (7)0.068 (2)−0.0091 (17)0.020 (6)*
H10A1.028 (7)0.109 (2)0.2564 (16)0.019 (6)*
H11A0.922 (6)0.054 (2)0.3967 (15)0.014 (5)*
H13A0.635 (7)0.390 (2)0.4924 (17)0.022 (6)*
U11U22U33U12U13U23
Cl10.0276 (3)0.0272 (3)0.0163 (2)0.0063 (2)0.00286 (18)0.00754 (18)
Cl20.0228 (3)0.0169 (2)0.0191 (2)0.00957 (18)−0.00111 (17)0.00205 (17)
O10.0261 (8)0.0160 (6)0.0165 (6)0.0086 (5)0.0003 (5)0.0045 (5)
N10.0149 (8)0.0165 (7)0.0148 (7)0.0051 (6)−0.0008 (6)0.0025 (6)
N20.0233 (9)0.0185 (8)0.0160 (7)0.0077 (6)0.0014 (6)0.0043 (6)
C10.0180 (10)0.0182 (9)0.0199 (9)0.0044 (7)−0.0031 (7)0.0068 (7)
C20.0208 (10)0.0256 (10)0.0180 (9)0.0034 (8)−0.0013 (7)0.0112 (7)
C30.0185 (10)0.0277 (10)0.0139 (8)0.0062 (8)−0.0005 (7)0.0039 (7)
C40.0174 (10)0.0194 (9)0.0178 (8)0.0050 (7)−0.0031 (7)0.0035 (7)
C50.0138 (9)0.0173 (8)0.0171 (8)0.0031 (7)−0.0019 (6)0.0063 (7)
C60.0121 (9)0.0171 (8)0.0148 (8)0.0026 (7)−0.0031 (6)0.0037 (6)
C70.0128 (9)0.0153 (8)0.0181 (8)0.0037 (7)−0.0037 (6)0.0036 (6)
C80.0106 (9)0.0157 (8)0.0160 (8)0.0035 (6)−0.0028 (6)0.0016 (6)
C90.0103 (9)0.0176 (9)0.0157 (8)0.0023 (7)−0.0034 (6)0.0026 (6)
C100.0137 (9)0.0166 (8)0.0163 (8)0.0040 (7)−0.0016 (6)0.0013 (6)
C110.0170 (10)0.0163 (9)0.0191 (8)0.0032 (7)−0.0021 (7)0.0050 (7)
C120.0146 (9)0.0222 (9)0.0150 (8)0.0027 (7)−0.0016 (6)0.0049 (7)
C130.0150 (9)0.0203 (9)0.0164 (8)0.0050 (7)−0.0024 (7)0.0009 (7)
C140.0128 (9)0.0157 (8)0.0183 (8)0.0036 (7)−0.0029 (6)0.0026 (7)
Cl1—C121.7338 (18)C4—H4A0.92 (2)
Cl2—C141.7310 (18)C5—C61.399 (3)
O1—C71.344 (2)C5—H5A0.87 (2)
O1—N21.413 (2)C6—C71.457 (2)
N1—C71.303 (2)C8—C91.470 (2)
N1—C81.380 (2)C9—C101.401 (3)
N2—C81.311 (2)C9—C141.405 (3)
C1—C21.387 (3)C10—C111.385 (3)
C1—C61.394 (2)C10—H10A0.94 (2)
C1—H1A0.91 (3)C11—C121.388 (3)
C2—C31.384 (3)C11—H11A0.91 (2)
C2—H2A0.91 (3)C12—C131.387 (3)
C3—C41.395 (3)C13—C141.389 (3)
C3—H3A0.95 (3)C13—H13A0.99 (3)
C4—C51.381 (3)
C7—O1—N2106.71 (14)O1—C7—C6119.03 (16)
C7—N1—C8102.57 (15)N2—C8—N1114.69 (16)
C8—N2—O1103.00 (15)N2—C8—C9125.14 (17)
C2—C1—C6119.53 (18)N1—C8—C9120.17 (15)
C2—C1—H1A119.2 (16)C10—C9—C14117.16 (16)
C6—C1—H1A121.2 (16)C10—C9—C8117.41 (16)
C3—C2—C1120.30 (17)C14—C9—C8125.43 (16)
C3—C2—H2A119.8 (16)C11—C10—C9122.41 (17)
C1—C2—H2A119.9 (16)C11—C10—H10A116.9 (14)
C2—C3—C4120.40 (18)C9—C10—H10A120.5 (14)
C2—C3—H3A117.6 (16)C10—C11—C12118.35 (17)
C4—C3—H3A122.0 (16)C10—C11—H11A120.0 (14)
C5—C4—C3119.60 (18)C12—C11—H11A121.6 (14)
C5—C4—H4A116.9 (14)C13—C12—C11121.57 (17)
C3—C4—H4A123.3 (14)C13—C12—Cl1118.49 (15)
C4—C5—C6120.14 (17)C11—C12—Cl1119.94 (15)
C4—C5—H5A117.2 (16)C12—C13—C14118.95 (17)
C6—C5—H5A122.2 (16)C12—C13—H13A118.8 (14)
C1—C6—C5120.04 (17)C14—C13—H13A121.9 (14)
C1—C6—C7121.86 (17)C13—C14—C9121.56 (17)
C5—C6—C7118.10 (16)C13—C14—Cl2116.22 (14)
N1—C7—O1113.04 (16)C9—C14—Cl2122.21 (14)
N1—C7—C6127.93 (16)
C7—O1—N2—C8−0.24 (19)C7—N1—C8—N20.1 (2)
C6—C1—C2—C30.8 (3)C7—N1—C8—C9−179.53 (16)
C1—C2—C3—C4−0.2 (3)N2—C8—C9—C10177.93 (18)
C2—C3—C4—C5−0.5 (3)N1—C8—C9—C10−2.5 (3)
C3—C4—C5—C60.5 (3)N2—C8—C9—C14−1.8 (3)
C2—C1—C6—C5−0.9 (3)N1—C8—C9—C14177.79 (17)
C2—C1—C6—C7178.25 (17)C14—C9—C10—C110.4 (3)
C4—C5—C6—C10.2 (3)C8—C9—C10—C11−179.33 (17)
C4—C5—C6—C7−178.94 (17)C9—C10—C11—C120.1 (3)
C8—N1—C7—O1−0.2 (2)C10—C11—C12—C13−0.9 (3)
C8—N1—C7—C6179.12 (18)C10—C11—C12—Cl1178.69 (14)
N2—O1—C7—N10.3 (2)C11—C12—C13—C141.2 (3)
N2—O1—C7—C6−179.11 (15)Cl1—C12—C13—C14−178.38 (14)
C1—C6—C7—N1−169.98 (19)C12—C13—C14—C9−0.7 (3)
C5—C6—C7—N19.1 (3)C12—C13—C14—Cl2179.14 (14)
C1—C6—C7—O19.4 (3)C10—C9—C14—C13−0.1 (3)
C5—C6—C7—O1−171.53 (16)C8—C9—C14—C13179.63 (17)
O1—N2—C8—N10.1 (2)C10—C9—C14—Cl2−179.90 (14)
O1—N2—C8—C9179.68 (16)C8—C9—C14—Cl2−0.2 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3A···Cl1i0.95 (3)2.81 (3)3.577 (2)138.6 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3A⋯Cl1i0.95 (3)2.81 (3)3.577 (2)138.6 (19)

Symmetry code: (i) .

  7 in total

1.  A short history of SHELX.

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Authors:  B Chandrakantha; Prakash Shetty; Vijesh Nambiyar; Nishitha Isloor; Arun M Isloor
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3.  Tetrahydropyridyloxadiazoles: semirigid muscarinic ligands.

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4.  Novel benzodiazepine receptor partial agonists: oxadiazolylimidazobenzodiazepines.

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5.  Synthesis, characterization and biological activities of some new benzo[b]thiophene derivatives.

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6.  Novel 5-HT3 antagonists. Indole oxadiazoles.

Authors:  C J Swain; R Baker; C Kneen; J Moseley; J Saunders; E M Seward; G Stevenson; M Beer; J Stanton; K Watling
Journal:  J Med Chem       Date:  1991-01       Impact factor: 7.446

7.  Structure validation in chemical crystallography.

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  7 in total
  1 in total

1.  5-(2,4-Dichloro-phen-yl)-3-(4-nitro-phen-yl)-1,2,4-oxadiazole.

Authors:  Hoong-Kun Fun; Mohd Mustaqim Rosli; Sankappa Rai; Arun M Isloor; Prakash Shetty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28
  1 in total

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