Literature DB >> 21579231

5-(2,4-Dichloro-phen-yl)-3-(4-nitro-phen-yl)-1,2,4-oxadiazole.

Hoong-Kun Fun, Mohd Mustaqim Rosli, Sankappa Rai, Arun M Isloor, Prakash Shetty.   

Abstract

In the title compound, C(14)H(7)Cl(2)N(3)O(3), the dichloro-phenyl and nitro-phenyl rings form dihedral angles of 5.4 (2) and 4.0 (2)°, respectively, with the oxadiazole ring. The nitro group is twisted out of the attached benzene ring by a dihedral angle of 10.4 (3)°. In the crystal, mol-ecules are linked into a chain along the a axis by C-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21579231      PMCID: PMC2979016          DOI: 10.1107/S1600536810011153

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of heterocyclic compounds including oxadiazo­les, see: Andersen et al. (1994 ▶); Showell et al. (1991 ▶); Watjen et al. (1989 ▶); Swain et al. (1991 ▶); Clitherow et al. (1996 ▶); Isloor et al. (2010 ▶); Chandrakantha et al. (2010 ▶). For related structures, see: Wang et al. (2006 ▶); Fun et al. (2010a ▶,b ▶).

Experimental

Crystal data

C14H7Cl2N3O3 M = 336.13 Orthorhombic, a = 13.5272 (5) Å b = 6.5362 (2) Å c = 15.6880 (5) Å V = 1387.08 (8) Å3 Z = 4 Mo Kα radiation μ = 0.48 mm−1 T = 296 K 0.37 × 0.11 × 0.04 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.843, T max = 0.980 9845 measured reflections 2658 independent reflections 2029 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.091 S = 1.06 2658 reflections 199 parameters 1 restraint H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 1243 Friedel pairs Flack parameter: −0.01 (7) Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810011153/ci5063sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810011153/ci5063Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H7Cl2N3O3F(000) = 680
Mr = 336.13Dx = 1.610 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2acCell parameters from 2389 reflections
a = 13.5272 (5) Åθ = 2.6–30.1°
b = 6.5362 (2) ŵ = 0.48 mm1
c = 15.6880 (5) ÅT = 296 K
V = 1387.08 (8) Å3Plate, colourless
Z = 40.37 × 0.11 × 0.04 mm
Bruker SMART APEXII CCD area-detector diffractometer2658 independent reflections
Radiation source: fine-focus sealed tube2029 reflections with I > 2σ(I)
graphiteRint = 0.045
φ and ω scansθmax = 26.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→16
Tmin = 0.843, Tmax = 0.980k = −7→8
9845 measured reflectionsl = −17→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0361P)2 + 0.1623P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
2658 reflectionsΔρmax = 0.24 e Å3
199 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 1243 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.01 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.37074 (7)1.17134 (15)0.20371 (7)0.0672 (3)
Cl20.08039 (7)0.73697 (16)0.34239 (10)0.0814 (4)
O10.15793 (17)0.3687 (4)0.41360 (18)0.0643 (8)
O20.3673 (2)−0.6615 (5)0.6679 (2)0.0975 (12)
O30.5067 (2)−0.5915 (5)0.6109 (2)0.0959 (11)
N10.1636 (2)0.1879 (5)0.4615 (2)0.0653 (10)
N20.3154 (2)0.2966 (4)0.4278 (2)0.0454 (7)
N30.4200 (3)−0.5541 (5)0.6249 (2)0.0646 (9)
C10.3731 (2)0.6429 (5)0.3289 (2)0.0515 (10)
H1A0.41980.54720.34630.062*
C20.4043 (3)0.8143 (5)0.2848 (3)0.0562 (10)
H2A0.47090.83460.27290.067*
C30.3342 (3)0.9546 (5)0.2589 (2)0.0478 (9)
C40.2351 (3)0.9269 (5)0.2767 (2)0.0493 (9)
H4A0.18881.02330.25940.059*
C50.2060 (2)0.7551 (5)0.3204 (2)0.0484 (9)
C60.2735 (2)0.6087 (4)0.3481 (2)0.0417 (8)
C70.2522 (2)0.4235 (5)0.3964 (2)0.0423 (8)
C80.2581 (3)0.1536 (5)0.4676 (2)0.0434 (8)
C90.2984 (2)−0.0278 (5)0.5105 (2)0.0411 (8)
C100.2372 (2)−0.1701 (5)0.5499 (2)0.0463 (9)
H10A0.1692−0.14930.55010.056*
C110.2759 (3)−0.3416 (5)0.5887 (2)0.0491 (10)
H11A0.2350−0.43570.61580.059*
C120.3767 (3)−0.3693 (5)0.5861 (2)0.0457 (9)
C130.4388 (3)−0.2323 (5)0.5472 (2)0.0547 (10)
H13A0.5066−0.25590.54580.066*
C140.3995 (2)−0.0590 (5)0.5103 (2)0.0508 (9)
H14A0.44110.03690.48510.061*
U11U22U33U12U13U23
Cl10.0778 (7)0.0595 (6)0.0642 (6)−0.0179 (5)0.0002 (6)0.0100 (6)
Cl20.0403 (4)0.0675 (6)0.1363 (11)−0.0026 (5)−0.0083 (7)0.0236 (7)
O10.0468 (14)0.0596 (15)0.086 (2)0.0041 (12)0.0112 (14)0.0228 (15)
O20.089 (2)0.0758 (19)0.127 (3)0.0000 (18)0.006 (2)0.045 (2)
O30.070 (2)0.094 (2)0.124 (3)0.0193 (18)−0.001 (2)0.035 (2)
N10.0445 (17)0.0621 (19)0.089 (3)0.0045 (15)0.0144 (19)0.0230 (19)
N20.0442 (16)0.0428 (15)0.0493 (18)−0.0004 (14)0.0019 (15)−0.0026 (15)
N30.066 (2)0.061 (2)0.066 (2)0.0007 (19)−0.007 (2)0.0065 (19)
C10.046 (2)0.0437 (19)0.065 (3)0.0046 (14)0.0124 (19)−0.0034 (18)
C20.051 (2)0.054 (2)0.065 (3)−0.0046 (18)0.015 (2)−0.009 (2)
C30.061 (2)0.044 (2)0.038 (2)−0.0077 (17)0.0005 (18)−0.0042 (17)
C40.050 (2)0.0450 (19)0.053 (2)0.0004 (16)−0.0104 (18)0.0052 (18)
C50.0418 (18)0.0520 (19)0.052 (2)−0.0054 (16)−0.0026 (17)−0.0072 (19)
C60.0440 (18)0.0357 (15)0.046 (2)0.0000 (13)0.0014 (17)−0.0082 (18)
C70.0402 (18)0.0428 (17)0.044 (2)−0.0013 (16)0.0029 (17)−0.0085 (17)
C80.0472 (19)0.0424 (17)0.040 (2)−0.0011 (17)0.0037 (19)−0.0072 (16)
C90.0462 (19)0.0400 (17)0.0370 (19)0.0007 (15)0.0012 (17)−0.0081 (16)
C100.0367 (18)0.052 (2)0.050 (2)0.0023 (16)0.0099 (17)−0.0048 (18)
C110.054 (2)0.0464 (19)0.047 (2)−0.0071 (16)0.0106 (19)0.0000 (18)
C120.050 (2)0.0432 (19)0.043 (2)−0.0008 (16)−0.0008 (17)0.0002 (17)
C130.045 (2)0.059 (2)0.060 (3)−0.0018 (18)−0.0032 (19)0.006 (2)
C140.044 (2)0.053 (2)0.055 (2)−0.0082 (16)0.0048 (18)0.0032 (19)
Cl1—C31.732 (3)C4—C51.373 (5)
Cl2—C51.739 (3)C4—H4A0.93
O1—C71.352 (4)C5—C61.392 (4)
O1—N11.403 (4)C6—C71.458 (4)
O2—N31.207 (4)C8—C91.468 (4)
O3—N31.218 (4)C9—C141.384 (4)
N1—C81.302 (5)C9—C101.390 (4)
N2—C71.289 (4)C10—C111.378 (4)
N2—C81.366 (4)C10—H10A0.93
N3—C121.474 (5)C11—C121.377 (5)
C1—C21.383 (5)C11—H11A0.93
C1—C61.398 (4)C12—C131.371 (5)
C1—H1A0.93C13—C141.379 (5)
C2—C31.380 (5)C13—H13A0.93
C2—H2A0.93C14—H14A0.93
C3—C41.381 (5)
C7—O1—N1106.2 (2)N2—C7—O1112.3 (3)
C8—N1—O1103.8 (3)N2—C7—C6127.0 (3)
C7—N2—C8103.8 (3)O1—C7—C6120.7 (3)
O2—N3—O3123.6 (4)N1—C8—N2113.9 (3)
O2—N3—C12118.2 (3)N1—C8—C9122.5 (3)
O3—N3—C12118.2 (4)N2—C8—C9123.5 (3)
C2—C1—C6122.1 (3)C14—C9—C10119.4 (3)
C2—C1—H1A119.0C14—C9—C8119.0 (3)
C6—C1—H1A119.0C10—C9—C8121.6 (3)
C3—C2—C1118.4 (3)C11—C10—C9121.0 (3)
C3—C2—H2A120.8C11—C10—H10A119.5
C1—C2—H2A120.8C9—C10—H10A119.5
C2—C3—C4121.3 (3)C10—C11—C12118.0 (3)
C2—C3—Cl1119.6 (3)C10—C11—H11A121.0
C4—C3—Cl1119.1 (3)C12—C11—H11A121.0
C5—C4—C3119.1 (3)C13—C12—C11122.3 (3)
C5—C4—H4A120.4C13—C12—N3118.4 (3)
C3—C4—H4A120.4C11—C12—N3119.3 (3)
C4—C5—C6122.0 (3)C12—C13—C14119.2 (3)
C4—C5—Cl2115.8 (3)C12—C13—H13A120.4
C6—C5—Cl2122.1 (3)C14—C13—H13A120.4
C5—C6—C1117.0 (3)C13—C14—C9120.1 (3)
C5—C6—C7127.1 (3)C13—C14—H14A120.0
C1—C6—C7115.8 (3)C9—C14—H14A120.0
C7—O1—N1—C8−0.2 (4)O1—N1—C8—N20.1 (4)
C6—C1—C2—C3−0.3 (5)O1—N1—C8—C9−177.5 (3)
C1—C2—C3—C40.4 (5)C7—N2—C8—N10.2 (4)
C1—C2—C3—Cl1179.9 (3)C7—N2—C8—C9177.7 (3)
C2—C3—C4—C5−0.6 (5)N1—C8—C9—C14176.5 (4)
Cl1—C3—C4—C5179.9 (3)N2—C8—C9—C14−0.8 (5)
C3—C4—C5—C60.7 (5)N1—C8—C9—C10−2.4 (5)
C3—C4—C5—Cl2178.3 (3)N2—C8—C9—C10−179.7 (3)
C4—C5—C6—C1−0.6 (5)C14—C9—C10—C110.0 (5)
Cl2—C5—C6—C1−178.0 (3)C8—C9—C10—C11178.9 (3)
C4—C5—C6—C7178.5 (3)C9—C10—C11—C12−1.0 (5)
Cl2—C5—C6—C71.0 (5)C10—C11—C12—C130.6 (5)
C2—C1—C6—C50.4 (5)C10—C11—C12—N3−178.3 (3)
C2—C1—C6—C7−178.8 (3)O2—N3—C12—C13171.1 (4)
C8—N2—C7—O1−0.3 (4)O3—N3—C12—C13−9.9 (6)
C8—N2—C7—C6179.1 (3)O2—N3—C12—C11−9.9 (5)
N1—O1—C7—N20.4 (4)O3—N3—C12—C11169.0 (4)
N1—O1—C7—C6−179.1 (3)C11—C12—C13—C140.8 (6)
C5—C6—C7—N2−174.0 (4)N3—C12—C13—C14179.7 (3)
C1—C6—C7—N25.0 (5)C12—C13—C14—C9−1.8 (6)
C5—C6—C7—O15.3 (5)C10—C9—C14—C131.4 (6)
C1—C6—C7—O1−175.6 (3)C8—C9—C14—C13−177.5 (3)
D—H···AD—HH···AD···AD—H···A
C13—H13A···N1i0.932.543.338 (5)144
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯N1i0.932.543.338 (5)144

Symmetry code: (i) .

  9 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, characterization and biological activity of some new 1,3,4-oxadiazole bearing 2-flouro-4-methoxy phenyl moiety.

Authors:  B Chandrakantha; Prakash Shetty; Vijesh Nambiyar; Nishitha Isloor; Arun M Isloor
Journal:  Eur J Med Chem       Date:  2009-12-04       Impact factor: 6.514

3.  Tetrahydropyridyloxadiazoles: semirigid muscarinic ligands.

Authors:  G A Showell; T L Gibbons; C O Kneen; A M MacLeod; K Merchant; J Saunders; S B Freedman; S Patel; R Baker
Journal:  J Med Chem       Date:  1991-03       Impact factor: 7.446

4.  Novel benzodiazepine receptor partial agonists: oxadiazolylimidazobenzodiazepines.

Authors:  F Watjen; R Baker; M Engelstoff; R Herbert; A MacLeod; A Knight; K Merchant; J Moseley; J Saunders; C J Swain
Journal:  J Med Chem       Date:  1989-10       Impact factor: 7.446

5.  Synthesis, characterization and biological activities of some new benzo[b]thiophene derivatives.

Authors:  Arun M Isloor; Balakrishna Kalluraya; K Sridhar Pai
Journal:  Eur J Med Chem       Date:  2009-11-11       Impact factor: 6.514

6.  Novel 5-HT3 antagonists. Indole oxadiazoles.

Authors:  C J Swain; R Baker; C Kneen; J Moseley; J Saunders; E M Seward; G Stevenson; M Beer; J Stanton; K Watling
Journal:  J Med Chem       Date:  1991-01       Impact factor: 7.446

7.  3-(2,4-Dichloro-phen-yl)-5-methyl-1,2,4-oxadiazole.

Authors:  Hoong-Kun Fun; Mohd Mustaqim Rosli; Sankappa Rai; Arun M Isloor; Prakash Shetty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-06

8.  3-(2,4-Dichloro-phen-yl)-5-phenyl-1,2,4-oxadiazole.

Authors:  Hoong-Kun Fun; Mohd Mustaqim Rosli; Sankappa Rai; Arun M Isloor; Prakash Shetty
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-17

9.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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