Literature DB >> 21580583

Methyl 2-acetamido-2-(1-acetyl-3-hydr-oxy-2-oxoindolin-3-yl)propanoate.

Hoong-Kun Fun, Jia Hao Goh, Yang Liu, Yan Zhang.   

Abstract

In the title isatin compound, C(16)H(18)N(2)O(6), the pyrrolidine ring adopts an envelope conformation and is inclined at a dihedral angle of 7.31 (5)° with respect to the benzene ring. The acetyl group is disordered over two positions with refined occupancies of 0.503 (4) and 0.497 (4). These groups make dihedral angles of 12.6 (6) and 19.6 (7)° with the pyrrolidine ring. In the crystal structure, inter-molecular C-H⋯O hydrogen bonds link neighbouring mol-ecules into infinite chains along the b axis. These chains are further inter-connected by inter-molecular O-H⋯O hydrogen bonds into two-dimensional arrays parallel to the bc plane. Weak inter-molecular C-H⋯π inter-actions further stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21580583      PMCID: PMC2983819          DOI: 10.1107/S1600536810007270

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of isatin derivatives, see: Chu et al. (2007 ▶); Glover & Bhattacharya (1991 ▶); Gursoy & Karali (1996 ▶); Pandeya et al. (1998 ▶); Patel et al. (2006 ▶); Popp (1975 ▶); Shvekhgeimer (1996 ▶); Sriram et al. (2006 ▶); Verma et al. (2004 ▶); Vine et al. (2007 ▶). For photoreactions of N-acetyl­isatin, see: Zhang et al. (2004 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Usman et al. (2001 ▶, 2002 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H18N2O6 M = 334.32 Monoclinic, a = 28.4345 (6) Å b = 8.3396 (2) Å c = 14.3779 (3) Å β = 114.351 (2)° V = 3106.15 (12) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.47 × 0.37 × 0.26 mm

Data collection

Bruker SMART APEX Duo CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.950, T max = 0.972 39997 measured reflections 5705 independent reflections 4854 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.03 5705 reflections 258 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.36 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810007270/sj2735sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810007270/sj2735Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H18N2O6F(000) = 1408
Mr = 334.32Dx = 1.430 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 9185 reflections
a = 28.4345 (6) Åθ = 2.6–32.6°
b = 8.3396 (2) ŵ = 0.11 mm1
c = 14.3779 (3) ÅT = 100 K
β = 114.351 (2)°Block, colourless
V = 3106.15 (12) Å30.47 × 0.37 × 0.26 mm
Z = 8
Bruker SMART APEX Duo CCD area-detector diffractometer5705 independent reflections
Radiation source: fine-focus sealed tube4854 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 32.7°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −42→43
Tmin = 0.950, Tmax = 0.972k = −12→12
39997 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0685P)2 + 1.8239P] where P = (Fo2 + 2Fc2)/3
5705 reflections(Δ/σ)max < 0.001
258 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.36 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.18064 (3)0.48686 (8)−0.01504 (5)0.02081 (14)
O20.07223 (3)0.53296 (9)−0.06871 (6)0.02680 (16)
O40.16093 (3)0.21913 (9)0.24294 (6)0.02902 (17)
O50.08943 (3)0.35325 (9)0.14131 (6)0.02432 (15)
O60.15655 (4)0.58921 (10)0.29251 (6)0.03130 (18)
N10.07133 (3)0.25274 (11)−0.07079 (8)0.0300 (2)
N20.15337 (3)0.59960 (9)0.13473 (6)0.01608 (14)
C10.11099 (4)0.13422 (11)−0.04580 (7)0.01937 (17)
C20.10601 (4)−0.02706 (11)−0.07223 (7)0.02217 (18)
H2A0.0737−0.0746−0.10520.027*
C30.15133 (4)−0.11480 (11)−0.04742 (7)0.02182 (18)
H3A0.1492−0.2230−0.06430.026*
C40.19967 (4)−0.04441 (11)0.00189 (8)0.02254 (18)
H4A0.2293−0.10540.01690.027*
C50.20390 (4)0.11744 (11)0.02897 (7)0.01982 (17)
H5A0.23610.16500.06210.024*
C60.15917 (3)0.20604 (10)0.00553 (6)0.01592 (15)
C70.15271 (3)0.38261 (10)0.02069 (6)0.01522 (15)
C80.09386 (4)0.40548 (11)−0.04325 (7)0.02089 (17)
O3A0.0031 (3)0.0870 (9)−0.1455 (7)0.068 (2)0.503 (4)
C9A0.01989 (9)0.2274 (3)−0.1348 (3)0.0290 (5)0.503 (4)
C10A−0.01576 (8)0.3669 (3)−0.17624 (17)0.0287 (5)0.503 (4)
H10A−0.04880.3293−0.22420.043*0.503 (4)
H10B−0.00160.4393−0.20990.043*0.503 (4)
H10C−0.01980.4216−0.12120.043*0.503 (4)
O3B0.0045 (3)0.0780 (10)−0.1114 (8)0.097 (3)0.497 (4)
C9B0.01733 (9)0.2087 (3)−0.0877 (3)0.0343 (6)0.497 (4)
C10B−0.01742 (8)0.3377 (3)−0.0815 (2)0.0339 (6)0.497 (4)
H10D−0.03470.3870−0.14730.051*0.497 (4)
H10E0.00260.4169−0.03280.051*0.497 (4)
H10F−0.04250.2924−0.06050.051*0.497 (4)
C110.16854 (3)0.43179 (10)0.13503 (6)0.01508 (14)
C120.14032 (4)0.32345 (11)0.18209 (7)0.01931 (16)
C130.05969 (6)0.25468 (15)0.18069 (14)0.0438 (3)
H13A0.02360.27690.14340.066*
H13B0.06960.27850.25160.066*
H13C0.06610.14350.17310.066*
C140.15038 (3)0.66917 (11)0.21616 (7)0.01811 (16)
C150.13850 (4)0.84545 (11)0.20910 (8)0.02441 (19)
H15A0.15770.89500.27410.037*
H15B0.10220.86060.19010.037*
H15C0.14800.89340.15860.037*
C160.22685 (4)0.41480 (12)0.19614 (7)0.02257 (18)
H16A0.23630.45570.26390.034*
H16B0.24460.47430.16320.034*
H16C0.23630.30370.19970.034*
H1O10.1751 (7)0.467 (2)−0.0785 (13)0.043 (4)*
H1N20.1491 (6)0.658 (2)0.0803 (13)0.037 (4)*
U11U22U33U12U13U23
O10.0311 (3)0.0154 (3)0.0206 (3)−0.0004 (2)0.0154 (3)0.0001 (2)
O20.0279 (4)0.0212 (3)0.0225 (3)0.0096 (3)0.0016 (3)−0.0024 (3)
O40.0417 (4)0.0207 (3)0.0283 (4)0.0071 (3)0.0181 (3)0.0091 (3)
O50.0234 (3)0.0183 (3)0.0349 (4)−0.0014 (2)0.0156 (3)0.0029 (3)
O60.0504 (5)0.0266 (4)0.0169 (3)0.0064 (3)0.0138 (3)0.0000 (3)
N10.0182 (4)0.0203 (4)0.0376 (5)0.0029 (3)−0.0025 (3)−0.0127 (3)
N20.0207 (3)0.0119 (3)0.0159 (3)0.0007 (2)0.0078 (3)−0.0004 (2)
C10.0213 (4)0.0154 (4)0.0192 (4)0.0019 (3)0.0061 (3)−0.0038 (3)
C20.0280 (4)0.0162 (4)0.0220 (4)−0.0012 (3)0.0099 (3)−0.0047 (3)
C30.0344 (5)0.0127 (3)0.0223 (4)0.0018 (3)0.0157 (4)−0.0003 (3)
C40.0289 (4)0.0154 (4)0.0277 (4)0.0062 (3)0.0162 (4)0.0022 (3)
C50.0221 (4)0.0163 (4)0.0232 (4)0.0034 (3)0.0114 (3)0.0008 (3)
C60.0194 (4)0.0129 (3)0.0154 (3)0.0019 (3)0.0072 (3)−0.0005 (3)
C70.0176 (3)0.0124 (3)0.0147 (3)0.0015 (3)0.0058 (3)−0.0008 (3)
C80.0203 (4)0.0183 (4)0.0178 (4)0.0034 (3)0.0015 (3)−0.0054 (3)
O3A0.031 (2)0.0249 (15)0.107 (3)−0.0043 (12)−0.012 (2)−0.0154 (19)
C9A0.0171 (9)0.0259 (10)0.0374 (14)−0.0030 (7)0.0044 (9)−0.0101 (10)
C10A0.0171 (8)0.0334 (11)0.0279 (10)0.0015 (7)0.0014 (7)−0.0044 (8)
O3B0.024 (2)0.050 (3)0.204 (9)−0.0125 (18)0.035 (4)−0.065 (4)
C9B0.0188 (9)0.0314 (12)0.0486 (17)−0.0025 (8)0.0096 (11)−0.0163 (12)
C10B0.0182 (9)0.0401 (13)0.0380 (12)0.0013 (8)0.0063 (8)−0.0151 (10)
C110.0167 (3)0.0129 (3)0.0143 (3)0.0010 (3)0.0051 (3)−0.0006 (3)
C120.0261 (4)0.0140 (3)0.0201 (4)0.0012 (3)0.0119 (3)0.0001 (3)
C130.0427 (7)0.0260 (5)0.0786 (10)−0.0036 (5)0.0409 (7)0.0095 (6)
C140.0189 (4)0.0166 (4)0.0173 (4)−0.0010 (3)0.0060 (3)−0.0042 (3)
C150.0282 (4)0.0160 (4)0.0318 (5)−0.0007 (3)0.0152 (4)−0.0060 (3)
C160.0175 (4)0.0238 (4)0.0207 (4)0.0022 (3)0.0021 (3)−0.0036 (3)
O1—C71.4095 (11)C7—C81.5533 (12)
O1—H1O10.875 (18)C7—C111.5695 (12)
O2—C81.2070 (11)O3A—C9A1.250 (8)
O4—C121.2013 (11)C9A—C10A1.496 (3)
O5—C121.3416 (12)C10A—H10A0.9600
O5—C131.4514 (13)C10A—H10B0.9600
O6—C141.2336 (12)C10A—H10C0.9600
N1—C9A1.386 (2)O3B—C9B1.156 (9)
N1—C81.4074 (13)C9B—C10B1.488 (3)
N1—C11.4295 (12)C10B—H10D0.9600
N1—C9B1.498 (3)C10B—H10E0.9600
N2—C141.3404 (11)C10B—H10F0.9600
N2—C111.4639 (11)C11—C161.5298 (12)
N2—H1N20.888 (17)C11—C121.5379 (12)
C1—C21.3890 (12)C13—H13A0.9600
C1—C61.3952 (12)C13—H13B0.9600
C2—C31.3944 (14)C13—H13C0.9600
C2—H2A0.9300C14—C151.5025 (13)
C3—C41.3904 (14)C15—H15A0.9600
C3—H3A0.9300C15—H15B0.9600
C4—C51.3962 (13)C15—H15C0.9600
C4—H4A0.9300C16—H16A0.9600
C5—C61.3871 (12)C16—H16B0.9600
C5—H5A0.9300C16—H16C0.9600
C6—C71.5109 (11)
C7—O1—H1O1111.9 (12)N1—C9A—C10A120.17 (19)
C12—O5—C13114.94 (9)O3B—C9B—C10B124.2 (4)
C9A—N1—C8123.92 (13)O3B—C9B—N1117.2 (4)
C9A—N1—C1124.67 (12)C10B—C9B—N1118.4 (2)
C8—N1—C1109.55 (8)C9B—C10B—H10D109.5
C9A—N1—C9B28.89 (14)C9B—C10B—H10E109.5
C8—N1—C9B125.78 (12)H10D—C10B—H10E109.5
C1—N1—C9B121.41 (14)C9B—C10B—H10F109.5
C14—N2—C11122.41 (7)H10D—C10B—H10F109.5
C14—N2—H1N2119.8 (11)H10E—C10B—H10F109.5
C11—N2—H1N2117.5 (11)N2—C11—C16109.79 (7)
C2—C1—C6121.84 (8)N2—C11—C12110.88 (7)
C2—C1—N1128.31 (9)C16—C11—C12109.35 (7)
C6—C1—N1109.69 (8)N2—C11—C7106.85 (7)
C1—C2—C3117.32 (9)C16—C11—C7110.62 (7)
C1—C2—H2A121.3C12—C11—C7109.33 (7)
C3—C2—H2A121.3O4—C12—O5124.52 (9)
C4—C3—C2121.60 (9)O4—C12—C11124.03 (9)
C4—C3—H3A119.2O5—C12—C11111.30 (7)
C2—C3—H3A119.2O5—C13—H13A109.5
C3—C4—C5120.25 (9)O5—C13—H13B109.5
C3—C4—H4A119.9H13A—C13—H13B109.5
C5—C4—H4A119.9O5—C13—H13C109.5
C6—C5—C4118.84 (9)H13A—C13—H13C109.5
C6—C5—H5A120.6H13B—C13—H13C109.5
C4—C5—H5A120.6O6—C14—N2120.42 (8)
C5—C6—C1120.13 (8)O6—C14—C15122.31 (9)
C5—C6—C7129.64 (8)N2—C14—C15117.26 (8)
C1—C6—C7110.08 (7)C14—C15—H15A109.5
O1—C7—C6115.36 (7)C14—C15—H15B109.5
O1—C7—C8109.87 (7)H15A—C15—H15B109.5
C6—C7—C8101.52 (7)C14—C15—H15C109.5
O1—C7—C11105.03 (7)H15A—C15—H15C109.5
C6—C7—C11113.98 (7)H15B—C15—H15C109.5
C8—C7—C11111.19 (7)C11—C16—H16A109.5
O2—C8—N1126.58 (9)C11—C16—H16B109.5
O2—C8—C7125.27 (9)H16A—C16—H16B109.5
N1—C8—C7108.05 (7)C11—C16—H16C109.5
O3A—C9A—N1118.0 (4)H16A—C16—H16C109.5
O3A—C9A—C10A121.2 (4)H16B—C16—H16C109.5
C9A—N1—C1—C2−5.6 (3)C8—N1—C9A—O3A−173.0 (6)
C8—N1—C1—C2−170.47 (10)C1—N1—C9A—O3A24.2 (7)
C9B—N1—C1—C228.8 (2)C9B—N1—C9A—O3A−69.1 (6)
C9A—N1—C1—C6169.8 (2)C8—N1—C9A—C10A−2.2 (4)
C8—N1—C1—C64.91 (12)C1—N1—C9A—C10A−165.0 (2)
C9B—N1—C1—C6−155.78 (19)C9B—N1—C9A—C10A101.7 (4)
C6—C1—C2—C3−1.38 (14)C9A—N1—C9B—O3B82.3 (7)
N1—C1—C2—C3173.51 (10)C8—N1—C9B—O3B179.1 (6)
C1—C2—C3—C40.06 (14)C1—N1—C9B—O3B−23.5 (7)
C2—C3—C4—C50.73 (15)C9A—N1—C9B—C10B−92.8 (5)
C3—C4—C5—C6−0.20 (14)C8—N1—C9B—C10B4.0 (4)
C4—C5—C6—C1−1.09 (13)C1—N1—C9B—C10B161.4 (2)
C4—C5—C6—C7−176.31 (9)C14—N2—C11—C16−75.49 (10)
C2—C1—C6—C51.93 (14)C14—N2—C11—C1245.45 (11)
N1—C1—C6—C5−173.81 (9)C14—N2—C11—C7164.50 (8)
C2—C1—C6—C7178.01 (8)O1—C7—C11—N260.42 (8)
N1—C1—C6—C72.27 (11)C6—C7—C11—N2−172.37 (7)
C5—C6—C7—O149.26 (12)C8—C7—C11—N2−58.36 (9)
C1—C6—C7—O1−126.33 (8)O1—C7—C11—C16−59.04 (9)
C5—C6—C7—C8167.97 (9)C6—C7—C11—C1668.17 (9)
C1—C6—C7—C8−7.62 (9)C8—C7—C11—C16−177.83 (7)
C5—C6—C7—C11−72.40 (12)O1—C7—C11—C12−179.52 (7)
C1—C6—C7—C11112.01 (8)C6—C7—C11—C12−52.31 (9)
C9A—N1—C8—O21.6 (3)C8—C7—C11—C1261.69 (9)
C1—N1—C8—O2166.66 (10)C13—O5—C12—O43.57 (15)
C9B—N1—C8—O2−33.7 (3)C13—O5—C12—C11179.33 (9)
C9A—N1—C8—C7−174.8 (2)N2—C11—C12—O4−135.23 (9)
C1—N1—C8—C7−9.79 (12)C16—C11—C12—O4−14.03 (12)
C9B—N1—C8—C7149.9 (2)C7—C11—C12—O4107.22 (10)
O1—C7—C8—O2−43.51 (12)N2—C11—C12—O548.98 (10)
C6—C7—C8—O2−166.08 (10)C16—C11—C12—O5170.18 (7)
C11—C7—C8—O272.33 (12)C7—C11—C12—O5−68.56 (9)
O1—C7—C8—N1133.01 (9)C11—N2—C14—O6−5.74 (14)
C6—C7—C8—N110.43 (10)C11—N2—C14—C15175.23 (8)
C11—C7—C8—N1−111.16 (9)
Cg1 is the centroid of the C1–C6 benzene ring.
D—H···AD—HH···AD···AD—H···A
O1—H1O1···O6i0.875 (17)1.769 (17)2.6391 (10)172 (2)
C3—H3A···O1ii0.932.583.4098 (12)150
C15—H15C···Cg1iii0.962.963.9104 (11)169
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯O6i0.875 (17)1.769 (17)2.6391 (10)172 (2)
C3—H3A⋯O1ii0.932.583.4098 (12)150
C15—H15CCg1iii0.962.963.9104 (11)169

Symmetry codes: (i) ; (ii) ; (iii) .

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Journal:  Org Lett       Date:  2004-12-23       Impact factor: 6.005

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