| Literature DB >> 21580583 |
Hoong-Kun Fun, Jia Hao Goh, Yang Liu, Yan Zhang.
Abstract
In the title isatin compound, C(16)H(18)N(2)O(6), the pyrrolidine ring adopts an envelope conformation and is inclined at a dihedral angle of 7.31 (5)° with respect to the benzene ring. The acetyl group is disordered over two positions with refined occupancies of 0.503 (4) and 0.497 (4). These groups make dihedral angles of 12.6 (6) and 19.6 (7)° with the pyrrolidine ring. In the crystal structure, inter-molecular C-H⋯O hydrogen bonds link neighbouring mol-ecules into infinite chains along the b axis. These chains are further inter-connected by inter-molecular O-H⋯O hydrogen bonds into two-dimensional arrays parallel to the bc plane. Weak inter-molecular C-H⋯π inter-actions further stabilize the crystal structure.Entities:
Year: 2010 PMID: 21580583 PMCID: PMC2983819 DOI: 10.1107/S1600536810007270
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H18N2O6 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 9185 reflections |
| θ = 2.6–32.6° | |
| µ = 0.11 mm−1 | |
| β = 114.351 (2)° | Block, colourless |
| 0.47 × 0.37 × 0.26 mm | |
| Bruker SMART APEX Duo CCD area-detector diffractometer | 5705 independent reflections |
| Radiation source: fine-focus sealed tube | 4854 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.7°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 39997 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 5705 reflections | (Δ/σ)max < 0.001 |
| 258 parameters | Δρmax = 0.48 e Å−3 |
| 0 restraints | Δρmin = −0.36 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| O1 | 0.18064 (3) | 0.48686 (8) | −0.01504 (5) | 0.02081 (14) | |
| O2 | 0.07223 (3) | 0.53296 (9) | −0.06871 (6) | 0.02680 (16) | |
| O4 | 0.16093 (3) | 0.21913 (9) | 0.24294 (6) | 0.02902 (17) | |
| O5 | 0.08943 (3) | 0.35325 (9) | 0.14131 (6) | 0.02432 (15) | |
| O6 | 0.15655 (4) | 0.58921 (10) | 0.29251 (6) | 0.03130 (18) | |
| N1 | 0.07133 (3) | 0.25274 (11) | −0.07079 (8) | 0.0300 (2) | |
| N2 | 0.15337 (3) | 0.59960 (9) | 0.13473 (6) | 0.01608 (14) | |
| C1 | 0.11099 (4) | 0.13422 (11) | −0.04580 (7) | 0.01937 (17) | |
| C2 | 0.10601 (4) | −0.02706 (11) | −0.07223 (7) | 0.02217 (18) | |
| H2A | 0.0737 | −0.0746 | −0.1052 | 0.027* | |
| C3 | 0.15133 (4) | −0.11480 (11) | −0.04742 (7) | 0.02182 (18) | |
| H3A | 0.1492 | −0.2230 | −0.0643 | 0.026* | |
| C4 | 0.19967 (4) | −0.04441 (11) | 0.00189 (8) | 0.02254 (18) | |
| H4A | 0.2293 | −0.1054 | 0.0169 | 0.027* | |
| C5 | 0.20390 (4) | 0.11744 (11) | 0.02897 (7) | 0.01982 (17) | |
| H5A | 0.2361 | 0.1650 | 0.0621 | 0.024* | |
| C6 | 0.15917 (3) | 0.20604 (10) | 0.00553 (6) | 0.01592 (15) | |
| C7 | 0.15271 (3) | 0.38261 (10) | 0.02069 (6) | 0.01522 (15) | |
| C8 | 0.09386 (4) | 0.40548 (11) | −0.04325 (7) | 0.02089 (17) | |
| O3A | 0.0031 (3) | 0.0870 (9) | −0.1455 (7) | 0.068 (2) | 0.503 (4) |
| C9A | 0.01989 (9) | 0.2274 (3) | −0.1348 (3) | 0.0290 (5) | 0.503 (4) |
| C10A | −0.01576 (8) | 0.3669 (3) | −0.17624 (17) | 0.0287 (5) | 0.503 (4) |
| H10A | −0.0488 | 0.3293 | −0.2242 | 0.043* | 0.503 (4) |
| H10B | −0.0016 | 0.4393 | −0.2099 | 0.043* | 0.503 (4) |
| H10C | −0.0198 | 0.4216 | −0.1212 | 0.043* | 0.503 (4) |
| O3B | 0.0045 (3) | 0.0780 (10) | −0.1114 (8) | 0.097 (3) | 0.497 (4) |
| C9B | 0.01733 (9) | 0.2087 (3) | −0.0877 (3) | 0.0343 (6) | 0.497 (4) |
| C10B | −0.01742 (8) | 0.3377 (3) | −0.0815 (2) | 0.0339 (6) | 0.497 (4) |
| H10D | −0.0347 | 0.3870 | −0.1473 | 0.051* | 0.497 (4) |
| H10E | 0.0026 | 0.4169 | −0.0328 | 0.051* | 0.497 (4) |
| H10F | −0.0425 | 0.2924 | −0.0605 | 0.051* | 0.497 (4) |
| C11 | 0.16854 (3) | 0.43179 (10) | 0.13503 (6) | 0.01508 (14) | |
| C12 | 0.14032 (4) | 0.32345 (11) | 0.18209 (7) | 0.01931 (16) | |
| C13 | 0.05969 (6) | 0.25468 (15) | 0.18069 (14) | 0.0438 (3) | |
| H13A | 0.0236 | 0.2769 | 0.1434 | 0.066* | |
| H13B | 0.0696 | 0.2785 | 0.2516 | 0.066* | |
| H13C | 0.0661 | 0.1435 | 0.1731 | 0.066* | |
| C14 | 0.15038 (3) | 0.66917 (11) | 0.21616 (7) | 0.01811 (16) | |
| C15 | 0.13850 (4) | 0.84545 (11) | 0.20910 (8) | 0.02441 (19) | |
| H15A | 0.1577 | 0.8950 | 0.2741 | 0.037* | |
| H15B | 0.1022 | 0.8606 | 0.1901 | 0.037* | |
| H15C | 0.1480 | 0.8934 | 0.1586 | 0.037* | |
| C16 | 0.22685 (4) | 0.41480 (12) | 0.19614 (7) | 0.02257 (18) | |
| H16A | 0.2363 | 0.4557 | 0.2639 | 0.034* | |
| H16B | 0.2446 | 0.4743 | 0.1632 | 0.034* | |
| H16C | 0.2363 | 0.3037 | 0.1997 | 0.034* | |
| H1O1 | 0.1751 (7) | 0.467 (2) | −0.0785 (13) | 0.043 (4)* | |
| H1N2 | 0.1491 (6) | 0.658 (2) | 0.0803 (13) | 0.037 (4)* |
| O1 | 0.0311 (3) | 0.0154 (3) | 0.0206 (3) | −0.0004 (2) | 0.0154 (3) | 0.0001 (2) |
| O2 | 0.0279 (4) | 0.0212 (3) | 0.0225 (3) | 0.0096 (3) | 0.0016 (3) | −0.0024 (3) |
| O4 | 0.0417 (4) | 0.0207 (3) | 0.0283 (4) | 0.0071 (3) | 0.0181 (3) | 0.0091 (3) |
| O5 | 0.0234 (3) | 0.0183 (3) | 0.0349 (4) | −0.0014 (2) | 0.0156 (3) | 0.0029 (3) |
| O6 | 0.0504 (5) | 0.0266 (4) | 0.0169 (3) | 0.0064 (3) | 0.0138 (3) | 0.0000 (3) |
| N1 | 0.0182 (4) | 0.0203 (4) | 0.0376 (5) | 0.0029 (3) | −0.0025 (3) | −0.0127 (3) |
| N2 | 0.0207 (3) | 0.0119 (3) | 0.0159 (3) | 0.0007 (2) | 0.0078 (3) | −0.0004 (2) |
| C1 | 0.0213 (4) | 0.0154 (4) | 0.0192 (4) | 0.0019 (3) | 0.0061 (3) | −0.0038 (3) |
| C2 | 0.0280 (4) | 0.0162 (4) | 0.0220 (4) | −0.0012 (3) | 0.0099 (3) | −0.0047 (3) |
| C3 | 0.0344 (5) | 0.0127 (3) | 0.0223 (4) | 0.0018 (3) | 0.0157 (4) | −0.0003 (3) |
| C4 | 0.0289 (4) | 0.0154 (4) | 0.0277 (4) | 0.0062 (3) | 0.0162 (4) | 0.0022 (3) |
| C5 | 0.0221 (4) | 0.0163 (4) | 0.0232 (4) | 0.0034 (3) | 0.0114 (3) | 0.0008 (3) |
| C6 | 0.0194 (4) | 0.0129 (3) | 0.0154 (3) | 0.0019 (3) | 0.0072 (3) | −0.0005 (3) |
| C7 | 0.0176 (3) | 0.0124 (3) | 0.0147 (3) | 0.0015 (3) | 0.0058 (3) | −0.0008 (3) |
| C8 | 0.0203 (4) | 0.0183 (4) | 0.0178 (4) | 0.0034 (3) | 0.0015 (3) | −0.0054 (3) |
| O3A | 0.031 (2) | 0.0249 (15) | 0.107 (3) | −0.0043 (12) | −0.012 (2) | −0.0154 (19) |
| C9A | 0.0171 (9) | 0.0259 (10) | 0.0374 (14) | −0.0030 (7) | 0.0044 (9) | −0.0101 (10) |
| C10A | 0.0171 (8) | 0.0334 (11) | 0.0279 (10) | 0.0015 (7) | 0.0014 (7) | −0.0044 (8) |
| O3B | 0.024 (2) | 0.050 (3) | 0.204 (9) | −0.0125 (18) | 0.035 (4) | −0.065 (4) |
| C9B | 0.0188 (9) | 0.0314 (12) | 0.0486 (17) | −0.0025 (8) | 0.0096 (11) | −0.0163 (12) |
| C10B | 0.0182 (9) | 0.0401 (13) | 0.0380 (12) | 0.0013 (8) | 0.0063 (8) | −0.0151 (10) |
| C11 | 0.0167 (3) | 0.0129 (3) | 0.0143 (3) | 0.0010 (3) | 0.0051 (3) | −0.0006 (3) |
| C12 | 0.0261 (4) | 0.0140 (3) | 0.0201 (4) | 0.0012 (3) | 0.0119 (3) | 0.0001 (3) |
| C13 | 0.0427 (7) | 0.0260 (5) | 0.0786 (10) | −0.0036 (5) | 0.0409 (7) | 0.0095 (6) |
| C14 | 0.0189 (4) | 0.0166 (4) | 0.0173 (4) | −0.0010 (3) | 0.0060 (3) | −0.0042 (3) |
| C15 | 0.0282 (4) | 0.0160 (4) | 0.0318 (5) | −0.0007 (3) | 0.0152 (4) | −0.0060 (3) |
| C16 | 0.0175 (4) | 0.0238 (4) | 0.0207 (4) | 0.0022 (3) | 0.0021 (3) | −0.0036 (3) |
| O1—C7 | 1.4095 (11) | C7—C8 | 1.5533 (12) |
| O1—H1O1 | 0.875 (18) | C7—C11 | 1.5695 (12) |
| O2—C8 | 1.2070 (11) | O3A—C9A | 1.250 (8) |
| O4—C12 | 1.2013 (11) | C9A—C10A | 1.496 (3) |
| O5—C12 | 1.3416 (12) | C10A—H10A | 0.9600 |
| O5—C13 | 1.4514 (13) | C10A—H10B | 0.9600 |
| O6—C14 | 1.2336 (12) | C10A—H10C | 0.9600 |
| N1—C9A | 1.386 (2) | O3B—C9B | 1.156 (9) |
| N1—C8 | 1.4074 (13) | C9B—C10B | 1.488 (3) |
| N1—C1 | 1.4295 (12) | C10B—H10D | 0.9600 |
| N1—C9B | 1.498 (3) | C10B—H10E | 0.9600 |
| N2—C14 | 1.3404 (11) | C10B—H10F | 0.9600 |
| N2—C11 | 1.4639 (11) | C11—C16 | 1.5298 (12) |
| N2—H1N2 | 0.888 (17) | C11—C12 | 1.5379 (12) |
| C1—C2 | 1.3890 (12) | C13—H13A | 0.9600 |
| C1—C6 | 1.3952 (12) | C13—H13B | 0.9600 |
| C2—C3 | 1.3944 (14) | C13—H13C | 0.9600 |
| C2—H2A | 0.9300 | C14—C15 | 1.5025 (13) |
| C3—C4 | 1.3904 (14) | C15—H15A | 0.9600 |
| C3—H3A | 0.9300 | C15—H15B | 0.9600 |
| C4—C5 | 1.3962 (13) | C15—H15C | 0.9600 |
| C4—H4A | 0.9300 | C16—H16A | 0.9600 |
| C5—C6 | 1.3871 (12) | C16—H16B | 0.9600 |
| C5—H5A | 0.9300 | C16—H16C | 0.9600 |
| C6—C7 | 1.5109 (11) | ||
| C7—O1—H1O1 | 111.9 (12) | N1—C9A—C10A | 120.17 (19) |
| C12—O5—C13 | 114.94 (9) | O3B—C9B—C10B | 124.2 (4) |
| C9A—N1—C8 | 123.92 (13) | O3B—C9B—N1 | 117.2 (4) |
| C9A—N1—C1 | 124.67 (12) | C10B—C9B—N1 | 118.4 (2) |
| C8—N1—C1 | 109.55 (8) | C9B—C10B—H10D | 109.5 |
| C9A—N1—C9B | 28.89 (14) | C9B—C10B—H10E | 109.5 |
| C8—N1—C9B | 125.78 (12) | H10D—C10B—H10E | 109.5 |
| C1—N1—C9B | 121.41 (14) | C9B—C10B—H10F | 109.5 |
| C14—N2—C11 | 122.41 (7) | H10D—C10B—H10F | 109.5 |
| C14—N2—H1N2 | 119.8 (11) | H10E—C10B—H10F | 109.5 |
| C11—N2—H1N2 | 117.5 (11) | N2—C11—C16 | 109.79 (7) |
| C2—C1—C6 | 121.84 (8) | N2—C11—C12 | 110.88 (7) |
| C2—C1—N1 | 128.31 (9) | C16—C11—C12 | 109.35 (7) |
| C6—C1—N1 | 109.69 (8) | N2—C11—C7 | 106.85 (7) |
| C1—C2—C3 | 117.32 (9) | C16—C11—C7 | 110.62 (7) |
| C1—C2—H2A | 121.3 | C12—C11—C7 | 109.33 (7) |
| C3—C2—H2A | 121.3 | O4—C12—O5 | 124.52 (9) |
| C4—C3—C2 | 121.60 (9) | O4—C12—C11 | 124.03 (9) |
| C4—C3—H3A | 119.2 | O5—C12—C11 | 111.30 (7) |
| C2—C3—H3A | 119.2 | O5—C13—H13A | 109.5 |
| C3—C4—C5 | 120.25 (9) | O5—C13—H13B | 109.5 |
| C3—C4—H4A | 119.9 | H13A—C13—H13B | 109.5 |
| C5—C4—H4A | 119.9 | O5—C13—H13C | 109.5 |
| C6—C5—C4 | 118.84 (9) | H13A—C13—H13C | 109.5 |
| C6—C5—H5A | 120.6 | H13B—C13—H13C | 109.5 |
| C4—C5—H5A | 120.6 | O6—C14—N2 | 120.42 (8) |
| C5—C6—C1 | 120.13 (8) | O6—C14—C15 | 122.31 (9) |
| C5—C6—C7 | 129.64 (8) | N2—C14—C15 | 117.26 (8) |
| C1—C6—C7 | 110.08 (7) | C14—C15—H15A | 109.5 |
| O1—C7—C6 | 115.36 (7) | C14—C15—H15B | 109.5 |
| O1—C7—C8 | 109.87 (7) | H15A—C15—H15B | 109.5 |
| C6—C7—C8 | 101.52 (7) | C14—C15—H15C | 109.5 |
| O1—C7—C11 | 105.03 (7) | H15A—C15—H15C | 109.5 |
| C6—C7—C11 | 113.98 (7) | H15B—C15—H15C | 109.5 |
| C8—C7—C11 | 111.19 (7) | C11—C16—H16A | 109.5 |
| O2—C8—N1 | 126.58 (9) | C11—C16—H16B | 109.5 |
| O2—C8—C7 | 125.27 (9) | H16A—C16—H16B | 109.5 |
| N1—C8—C7 | 108.05 (7) | C11—C16—H16C | 109.5 |
| O3A—C9A—N1 | 118.0 (4) | H16A—C16—H16C | 109.5 |
| O3A—C9A—C10A | 121.2 (4) | H16B—C16—H16C | 109.5 |
| C9A—N1—C1—C2 | −5.6 (3) | C8—N1—C9A—O3A | −173.0 (6) |
| C8—N1—C1—C2 | −170.47 (10) | C1—N1—C9A—O3A | 24.2 (7) |
| C9B—N1—C1—C2 | 28.8 (2) | C9B—N1—C9A—O3A | −69.1 (6) |
| C9A—N1—C1—C6 | 169.8 (2) | C8—N1—C9A—C10A | −2.2 (4) |
| C8—N1—C1—C6 | 4.91 (12) | C1—N1—C9A—C10A | −165.0 (2) |
| C9B—N1—C1—C6 | −155.78 (19) | C9B—N1—C9A—C10A | 101.7 (4) |
| C6—C1—C2—C3 | −1.38 (14) | C9A—N1—C9B—O3B | 82.3 (7) |
| N1—C1—C2—C3 | 173.51 (10) | C8—N1—C9B—O3B | 179.1 (6) |
| C1—C2—C3—C4 | 0.06 (14) | C1—N1—C9B—O3B | −23.5 (7) |
| C2—C3—C4—C5 | 0.73 (15) | C9A—N1—C9B—C10B | −92.8 (5) |
| C3—C4—C5—C6 | −0.20 (14) | C8—N1—C9B—C10B | 4.0 (4) |
| C4—C5—C6—C1 | −1.09 (13) | C1—N1—C9B—C10B | 161.4 (2) |
| C4—C5—C6—C7 | −176.31 (9) | C14—N2—C11—C16 | −75.49 (10) |
| C2—C1—C6—C5 | 1.93 (14) | C14—N2—C11—C12 | 45.45 (11) |
| N1—C1—C6—C5 | −173.81 (9) | C14—N2—C11—C7 | 164.50 (8) |
| C2—C1—C6—C7 | 178.01 (8) | O1—C7—C11—N2 | 60.42 (8) |
| N1—C1—C6—C7 | 2.27 (11) | C6—C7—C11—N2 | −172.37 (7) |
| C5—C6—C7—O1 | 49.26 (12) | C8—C7—C11—N2 | −58.36 (9) |
| C1—C6—C7—O1 | −126.33 (8) | O1—C7—C11—C16 | −59.04 (9) |
| C5—C6—C7—C8 | 167.97 (9) | C6—C7—C11—C16 | 68.17 (9) |
| C1—C6—C7—C8 | −7.62 (9) | C8—C7—C11—C16 | −177.83 (7) |
| C5—C6—C7—C11 | −72.40 (12) | O1—C7—C11—C12 | −179.52 (7) |
| C1—C6—C7—C11 | 112.01 (8) | C6—C7—C11—C12 | −52.31 (9) |
| C9A—N1—C8—O2 | 1.6 (3) | C8—C7—C11—C12 | 61.69 (9) |
| C1—N1—C8—O2 | 166.66 (10) | C13—O5—C12—O4 | 3.57 (15) |
| C9B—N1—C8—O2 | −33.7 (3) | C13—O5—C12—C11 | 179.33 (9) |
| C9A—N1—C8—C7 | −174.8 (2) | N2—C11—C12—O4 | −135.23 (9) |
| C1—N1—C8—C7 | −9.79 (12) | C16—C11—C12—O4 | −14.03 (12) |
| C9B—N1—C8—C7 | 149.9 (2) | C7—C11—C12—O4 | 107.22 (10) |
| O1—C7—C8—O2 | −43.51 (12) | N2—C11—C12—O5 | 48.98 (10) |
| C6—C7—C8—O2 | −166.08 (10) | C16—C11—C12—O5 | 170.18 (7) |
| C11—C7—C8—O2 | 72.33 (12) | C7—C11—C12—O5 | −68.56 (9) |
| O1—C7—C8—N1 | 133.01 (9) | C11—N2—C14—O6 | −5.74 (14) |
| C6—C7—C8—N1 | 10.43 (10) | C11—N2—C14—C15 | 175.23 (8) |
| C11—C7—C8—N1 | −111.16 (9) |
| Cg1 is the centroid of the C1–C6 benzene ring. |
| H··· | ||||
| O1—H1O1···O6i | 0.875 (17) | 1.769 (17) | 2.6391 (10) | 172 (2) |
| C3—H3A···O1ii | 0.93 | 2.58 | 3.4098 (12) | 150 |
| C15—H15C···Cg1iii | 0.96 | 2.96 | 3.9104 (11) | 169 |
Hydrogen-bond geometry (Å, °)
Cg1 is the centroid of the C1–C6 benzene ring.
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.875 (17) | 1.769 (17) | 2.6391 (10) | 172 (2) |
| C3—H3 | 0.93 | 2.58 | 3.4098 (12) | 150 |
| C15—H15 | 0.96 | 2.96 | 3.9104 (11) | 169 |
Symmetry codes: (i) ; (ii) ; (iii) .