Literature DB >> 21588619

1'-Acetyl-3-phenyl-6-oxa-4-thia-2-aza-spiro-[bicyclo-[3.2.0]hept-2-ene-7,3'-indolin]-2'-one.

Hoong-Kun Fun, Jia Hao Goh, Yang Liu, Yan Zhang.   

Abstract

In the title indoline compound, C(19)H(14)N(2)O(3)S, the pyrrolidine ring adopts an envelope conformation with the four-connected (spiro) C atom as the flap [displacement = 0.148 (3) Å]. The mean plane formed through the indoline unit is inclined at dihedral angles of 89.92 (16) and 59.54 (12)° with the thia-zole and phenyl rings, respectively; the dihedral angle between the latter rings is 9.55 (14)°. In the crystal, pairs of inter-molecular C-H⋯O hydrogen bonds link neighbouring mol-ecules into inversion dimers, producing R(2) (2)(6) hydrogen-bond ring motifs. Weak inter-molecular C-H⋯π as well as π-π inter-actions [centroid-centroid distance = 3.4041 (15) Å] further consolidate the crystal structure.

Entities:  

Year:  2010        PMID: 21588619      PMCID: PMC3007916          DOI: 10.1107/S1600536810031016

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of compounds related to the title indoline compound, see: Aanandhi et al. (2008 ▶); Crews et al. (1988 ▶); Cutignano et al. (2001 ▶); DeRoy & Charette (2003 ▶); Gao et al. (2010 ▶); Kaleta et al. (2006 ▶); Lawrence et al. (2008 ▶); Muthukumar et al. (2008 ▶); Shi et al. (2010 ▶); Tsuruni et al. (1995 ▶); Wang et al. (2005 ▶); Williams et al. (2001 ▶); Xue et al. (2000 ▶); Yoshimura et al. (1995 ▶); Zhang et al. (2004 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For graph-set theory of hydrogen-bond ring motifs, see: Bernstein et al. (1995 ▶). For closely related structures, see: Fun et al. (2010 ▶); Usman et al. (2001 ▶, 2002 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C19H14N2O3S M = 350.38 Triclinic, a = 7.5054 (3) Å b = 9.4936 (3) Å c = 11.6359 (4) Å α = 103.502 (3)° β = 91.163 (3)° γ = 100.200 (3)° V = 791.79 (5) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 100 K 0.24 × 0.10 × 0.05 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.948, T max = 0.989 10748 measured reflections 3627 independent reflections 2548 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.058 wR(F 2) = 0.128 S = 1.05 3627 reflections 227 parameters H-atom parameters constrained Δρmax = 0.35 e Å−3 Δρmin = −0.42 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031016/hb5595sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031016/hb5595Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H14N2O3SZ = 2
Mr = 350.38F(000) = 364
Triclinic, P1Dx = 1.470 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.5054 (3) ÅCell parameters from 2361 reflections
b = 9.4936 (3) Åθ = 2.5–29.9°
c = 11.6359 (4) ŵ = 0.23 mm1
α = 103.502 (3)°T = 100 K
β = 91.163 (3)°Block, colourless
γ = 100.200 (3)°0.24 × 0.10 × 0.05 mm
V = 791.79 (5) Å3
Bruker SMART APEXII CCD diffractometer3627 independent reflections
Radiation source: fine-focus sealed tube2548 reflections with I > 2σ(I)
graphiteRint = 0.062
φ and ω scansθmax = 27.5°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −9→9
Tmin = 0.948, Tmax = 0.989k = −12→10
10748 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.058Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0437P)2 + 0.6382P] where P = (Fo2 + 2Fc2)/3
3627 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.42 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.31424 (10)0.63788 (7)0.48799 (6)0.01816 (18)
O10.5459 (3)0.90182 (19)0.58975 (16)0.0190 (4)
O20.6257 (3)0.7176 (2)0.74453 (17)0.0244 (5)
O30.8183 (3)0.9955 (2)1.07309 (17)0.0229 (5)
N10.6758 (3)0.9398 (2)0.89013 (19)0.0156 (5)
N20.2265 (3)0.7250 (2)0.70929 (19)0.0158 (5)
C10.5502 (4)1.0821 (3)0.7864 (2)0.0161 (6)
C20.5067 (4)1.2098 (3)0.7631 (2)0.0186 (6)
H2A0.44621.20740.69190.022*
C30.5566 (4)1.3413 (3)0.8498 (3)0.0204 (6)
H3A0.53331.42910.83580.025*
C40.6407 (4)1.3411 (3)0.9567 (3)0.0212 (6)
H4A0.66931.42931.01430.025*
C50.6845 (4)1.2135 (3)0.9816 (2)0.0180 (6)
H5A0.74041.21491.05400.022*
C60.6399 (4)1.0849 (3)0.8924 (2)0.0159 (6)
C70.6062 (4)0.8429 (3)0.7805 (2)0.0173 (6)
C80.5034 (4)0.9279 (3)0.7127 (2)0.0161 (6)
C90.2983 (4)0.8603 (3)0.6760 (2)0.0156 (6)
H9A0.21920.93340.69340.019*
C100.3596 (4)0.8344 (3)0.5480 (2)0.0168 (6)
H10A0.30380.88850.49950.020*
C110.2314 (4)0.6112 (3)0.6260 (2)0.0156 (6)
C120.1634 (4)0.4594 (3)0.6374 (2)0.0157 (6)
C130.0699 (4)0.4403 (3)0.7366 (2)0.0180 (6)
H13A0.05530.52230.79490.022*
C14−0.0011 (4)0.3003 (3)0.7486 (2)0.0198 (6)
H14A−0.06370.28810.81480.024*
C150.0213 (4)0.1773 (3)0.6613 (3)0.0213 (6)
H15A−0.02620.08290.66910.026*
C160.1142 (4)0.1963 (3)0.5632 (3)0.0217 (6)
H16A0.12870.11420.50500.026*
C170.1866 (4)0.3371 (3)0.5504 (2)0.0181 (6)
H17A0.24970.34910.48440.022*
C180.7757 (4)0.9051 (3)0.9798 (2)0.0170 (6)
C190.8273 (4)0.7560 (3)0.9534 (3)0.0240 (7)
H19D0.89230.74461.02160.036*
H19A0.90290.74670.88750.036*
H19B0.71970.68120.93430.036*
U11U22U33U12U13U23
S10.0253 (4)0.0130 (3)0.0158 (3)0.0014 (3)0.0011 (3)0.0044 (3)
O10.0228 (11)0.0163 (9)0.0174 (10)0.0026 (8)0.0010 (8)0.0037 (8)
O20.0338 (13)0.0134 (10)0.0266 (11)0.0091 (9)−0.0044 (9)0.0030 (8)
O30.0289 (12)0.0223 (10)0.0180 (10)0.0053 (9)0.0006 (9)0.0060 (9)
N10.0201 (13)0.0111 (10)0.0167 (11)0.0030 (9)0.0020 (9)0.0054 (9)
N20.0177 (12)0.0115 (11)0.0184 (12)0.0027 (9)0.0012 (9)0.0042 (9)
C10.0174 (15)0.0109 (12)0.0202 (14)0.0008 (11)0.0042 (11)0.0052 (11)
C20.0188 (15)0.0152 (13)0.0237 (14)0.0041 (11)−0.0008 (12)0.0081 (11)
C30.0198 (15)0.0101 (13)0.0332 (16)0.0044 (11)0.0041 (12)0.0074 (12)
C40.0237 (17)0.0133 (13)0.0241 (15)0.0022 (12)0.0052 (12)0.0002 (11)
C50.0167 (15)0.0166 (13)0.0196 (14)0.0016 (11)0.0023 (11)0.0034 (11)
C60.0167 (15)0.0125 (12)0.0204 (14)0.0027 (11)0.0025 (11)0.0075 (11)
C70.0210 (16)0.0120 (13)0.0192 (14)0.0026 (11)0.0010 (11)0.0050 (11)
C80.0226 (16)0.0111 (12)0.0151 (13)0.0020 (11)0.0023 (11)0.0049 (11)
C90.0196 (15)0.0118 (12)0.0162 (13)0.0018 (11)0.0015 (11)0.0055 (11)
C100.0193 (15)0.0116 (12)0.0202 (14)0.0018 (11)−0.0006 (11)0.0062 (11)
C110.0160 (14)0.0149 (13)0.0180 (13)0.0045 (11)0.0003 (11)0.0066 (11)
C120.0145 (14)0.0134 (12)0.0191 (14)0.0012 (11)−0.0019 (11)0.0049 (11)
C130.0235 (16)0.0155 (13)0.0149 (13)0.0045 (12)0.0013 (11)0.0027 (11)
C140.0211 (16)0.0212 (14)0.0193 (14)0.0032 (12)0.0025 (12)0.0100 (12)
C150.0213 (16)0.0119 (13)0.0314 (16)0.0016 (11)0.0001 (13)0.0079 (12)
C160.0244 (17)0.0136 (13)0.0256 (15)0.0046 (12)0.0013 (13)0.0011 (12)
C170.0175 (15)0.0171 (14)0.0197 (14)0.0044 (11)0.0029 (11)0.0033 (11)
C180.0166 (15)0.0184 (13)0.0178 (14)0.0017 (11)0.0025 (11)0.0086 (11)
C190.0275 (17)0.0188 (14)0.0282 (16)0.0086 (12)−0.0068 (13)0.0083 (12)
S1—C111.790 (3)C7—C81.538 (4)
S1—C101.801 (3)C8—C91.568 (4)
O1—C81.446 (3)C9—C101.544 (4)
O1—C101.452 (3)C9—H9A0.9800
O2—C71.201 (3)C10—H10A0.9800
O3—C181.212 (3)C11—C121.479 (4)
N1—C181.406 (3)C12—C171.390 (4)
N1—C71.415 (3)C12—C131.393 (4)
N1—C61.444 (3)C13—C141.382 (4)
N2—C111.278 (3)C13—H13A0.9300
N2—C91.444 (3)C14—C151.396 (4)
C1—C61.385 (4)C14—H14A0.9300
C1—C21.393 (3)C15—C161.380 (4)
C1—C81.490 (4)C15—H15A0.9300
C2—C31.396 (4)C16—C171.394 (4)
C2—H2A0.9300C16—H16A0.9300
C3—C41.383 (4)C17—H17A0.9300
C3—H3A0.9300C18—C191.498 (4)
C4—C51.400 (4)C19—H19D0.9600
C4—H4A0.9300C19—H19A0.9600
C5—C61.389 (4)C19—H19B0.9600
C5—H5A0.9300
C11—S1—C1090.03 (12)C8—C9—H9A113.1
C8—O1—C1092.80 (19)O1—C10—C991.54 (19)
C18—N1—C7126.1 (2)O1—C10—S1116.58 (17)
C18—N1—C6124.7 (2)C9—C10—S1106.43 (17)
C7—N1—C6109.1 (2)O1—C10—H10A113.4
C11—N2—C9112.1 (2)C9—C10—H10A113.4
C6—C1—C2121.3 (2)S1—C10—H10A113.4
C6—C1—C8110.1 (2)N2—C11—C12122.6 (2)
C2—C1—C8128.5 (2)N2—C11—S1118.4 (2)
C1—C2—C3117.9 (3)C12—C11—S1118.90 (19)
C1—C2—H2A121.0C17—C12—C13120.0 (2)
C3—C2—H2A121.0C17—C12—C11121.5 (2)
C4—C3—C2120.0 (2)C13—C12—C11118.5 (2)
C4—C3—H3A120.0C14—C13—C12120.3 (2)
C2—C3—H3A120.0C14—C13—H13A119.8
C3—C4—C5122.7 (3)C12—C13—H13A119.8
C3—C4—H4A118.7C13—C14—C15119.9 (3)
C5—C4—H4A118.7C13—C14—H14A120.0
C6—C5—C4116.4 (3)C15—C14—H14A120.0
C6—C5—H5A121.8C16—C15—C14119.7 (2)
C4—C5—H5A121.8C16—C15—H15A120.2
C1—C6—C5121.6 (2)C14—C15—H15A120.2
C1—C6—N1109.4 (2)C15—C16—C17120.8 (3)
C5—C6—N1128.9 (2)C15—C16—H16A119.6
O2—C7—N1126.9 (2)C17—C16—H16A119.6
O2—C7—C8125.5 (2)C12—C17—C16119.3 (3)
N1—C7—C8107.6 (2)C12—C17—H17A120.3
O1—C8—C1117.7 (2)C16—C17—H17A120.3
O1—C8—C7111.3 (2)O3—C18—N1119.7 (2)
C1—C8—C7102.8 (2)O3—C18—C19123.0 (2)
O1—C8—C990.84 (19)N1—C18—C19117.2 (2)
C1—C8—C9118.2 (2)C18—C19—H19D109.5
C7—C8—C9116.3 (2)C18—C19—H19A109.5
N2—C9—C10113.0 (2)H19D—C19—H19A109.5
N2—C9—C8116.6 (2)C18—C19—H19B109.5
C10—C9—C884.8 (2)H19D—C19—H19B109.5
N2—C9—H9A113.1H19A—C19—H19B109.5
C10—C9—H9A113.1
C6—C1—C2—C30.1 (4)C11—N2—C9—C8−94.8 (3)
C8—C1—C2—C3176.1 (3)O1—C8—C9—N2114.4 (2)
C1—C2—C3—C4−2.3 (4)C1—C8—C9—N2−123.2 (2)
C2—C3—C4—C52.1 (4)C7—C8—C9—N20.0 (3)
C3—C4—C5—C60.4 (4)O1—C8—C9—C101.18 (17)
C2—C1—C6—C52.4 (4)C1—C8—C9—C10123.6 (2)
C8—C1—C6—C5−174.2 (3)C7—C8—C9—C10−113.2 (2)
C2—C1—C6—N1−177.0 (3)C8—O1—C10—C91.27 (18)
C8—C1—C6—N16.4 (3)C8—O1—C10—S1−107.98 (19)
C4—C5—C6—C1−2.6 (4)N2—C9—C10—O1−117.9 (2)
C4—C5—C6—N1176.7 (3)C8—C9—C10—O1−1.18 (17)
C18—N1—C6—C1175.4 (3)N2—C9—C10—S10.4 (3)
C7—N1—C6—C1−0.3 (3)C8—C9—C10—S1117.15 (17)
C18—N1—C6—C5−3.9 (4)C11—S1—C10—O199.1 (2)
C7—N1—C6—C5−179.7 (3)C11—S1—C10—C9−1.19 (19)
C18—N1—C7—O2−2.6 (5)C9—N2—C11—C12−179.1 (2)
C6—N1—C7—O2173.1 (3)C9—N2—C11—S1−2.2 (3)
C18—N1—C7—C8178.8 (2)C10—S1—C11—N22.1 (2)
C6—N1—C7—C8−5.6 (3)C10—S1—C11—C12179.2 (2)
C10—O1—C8—C1−124.1 (2)N2—C11—C12—C17−173.5 (3)
C10—O1—C8—C7117.6 (2)S1—C11—C12—C179.6 (3)
C10—O1—C8—C9−1.26 (18)N2—C11—C12—C138.2 (4)
C6—C1—C8—O1−132.0 (2)S1—C11—C12—C13−168.7 (2)
C2—C1—C8—O151.7 (4)C17—C12—C13—C14−0.5 (4)
C6—C1—C8—C7−9.3 (3)C11—C12—C13—C14177.8 (3)
C2—C1—C8—C7174.4 (3)C12—C13—C14—C150.2 (4)
C6—C1—C8—C9120.4 (3)C13—C14—C15—C16−0.1 (4)
C2—C1—C8—C9−55.9 (4)C14—C15—C16—C170.2 (4)
O2—C7—C8—O1−42.9 (4)C13—C12—C17—C160.6 (4)
N1—C7—C8—O1135.8 (2)C11—C12—C17—C16−177.7 (3)
O2—C7—C8—C1−169.8 (3)C15—C16—C17—C12−0.4 (4)
N1—C7—C8—C18.9 (3)C7—N1—C18—O3−175.5 (3)
O2—C7—C8—C959.3 (4)C6—N1—C18—O39.5 (4)
N1—C7—C8—C9−122.0 (2)C7—N1—C18—C195.5 (4)
C11—N2—C9—C101.1 (3)C6—N1—C18—C19−169.5 (2)
Cg1 is the centroid of C1–C6 phenyl ring.
D—H···AD—HH···AD···AD—H···A
C10—H10A···O1i0.982.563.261 (3)129
C14—H14A···Cg1ii0.932.673.423 (3)139
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of C1–C6 phenyl ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O1i0.982.563.261 (3)129
C14—H14ACg1ii0.932.673.423 (3)139

Symmetry codes: (i) ; (ii) .

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1.  (Z)-1-Acetyl-3-[2-oxo-1-phenyl-2-(3-pyrid-yl)ethyl-idene]indolin-2-one.

Authors:  Hoong-Kun Fun; Jia Hao Goh; Haitao Yu; Yan Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-11
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